Cla006196.1 (mRNA) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla006196
Type	mRNA
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Terminal flower 1 (Fragment) (AHRD V1 **-- E3TPY4_HELAN); contains Interpro domain(s) IPR008914 Phosphatidylethanolamine-binding protein PEBP
Location	Chr5 : 8150494 .. 8151292 (-)
Sequence length	324

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAAGGGGTATAATAGAGCCACTAATTGTGGGAAGAGTGGTGGGAGATGTGGTTGATATCTTCAGTCCAAATGTGAAAATGAATGTCATTTACAATTCCTTCAAACAAGTCGCCAATGGCCACGAGCTTCTCCCTTCTCTTATTTCCTCTAAACCTCGCGTTGAGGTTGGCGGTGACGACATGAGATCAGCTTTCACTTTGGTATATATATGCATATTAATTTCTTAATCATTATATATATATATATATATCTTCTAAATGAATTTTCTAATTATTTGCAGATTATGATTGACCCTGATGCTCCAAGCCCAAGTGACCCTTATCTTAGGGAATACCTTCACTGGTTTGTACTATTAATTTTATATGTAAGGGTTTGGATATTTATTTATTTATTTTCGTACGGGTTAAAATATAAACATGTGTGTGTGTGTGTTTTTATTTTATTTTATTTTATTTTTATTATTTTTTTAATTTTATTTTAATTTTGTCCTCAGGATGGTCACAGACATTCCTGGTACCACTGATGCTTCTTTCGGTATAATTTTTTCCCTTCTAATCTAATCTCTTCATCATCCCTGCTTCTTCTCTACTTTATTTTTGGACTTTGCACAATTTTCATTCATTAATAATATTCAAGAATCTCCCAACTATTGGATATAATTTTTGGACCACTATTGCAACTATAGCCTCTTGCTTGCATTCTACCTCTCAACATCTCACATTTCTAAGCCTCGTTTTATAACGATTTTGTTGTTAGTTTGCCGTTTTGAAATTTATAGGAAAAAAGAATCTTTAA

mRNA sequence

ATGTCAAGGGGTATAATAGAGCCACTAATTGTGGGAAGAGTGGTGGGAGATGTGGTTGATATCTTCAGTCCAAATGTGAAAATGAATGTCATTTACAATTCCTTCAAACAAGTCGCCAATGGCCACGAGCTTCTCCCTTCTCTTATTTCCTCTAAACCTCGCGTTGAGGTTGGCGGTGACGACATGAGATCAGCTTTCACTTTGATTATGATTGACCCTGATGCTCCAAGCCCAAGTGACCCTTATCTTAGGGAATACCTTCACTGGATGGTCACAGACATTCCTGGTACCACTGATGCTTCTTTCGGAAAAAAGAATCTTTAA

Coding sequence (CDS)

ATGTCAAGGGGTATAATAGAGCCACTAATTGTGGGAAGAGTGGTGGGAGATGTGGTTGATATCTTCAGTCCAAATGTGAAAATGAATGTCATTTACAATTCCTTCAAACAAGTCGCCAATGGCCACGAGCTTCTCCCTTCTCTTATTTCCTCTAAACCTCGCGTTGAGGTTGGCGGTGACGACATGAGATCAGCTTTCACTTTGATTATGATTGACCCTGATGCTCCAAGCCCAAGTGACCCTTATCTTAGGGAATACCTTCACTGGATGGTCACAGACATTCCTGGTACCACTGATGCTTCTTTCGGAAAAAAGAATCTTTAA

Protein sequence

MSRGIIEPLIVGRVVGDVVDIFSPNVKMNVIYNSFKQVANGHELLPSLISSKPRVEVGGDDMRSAFTLIMIDPDAPSPSDPYLREYLHWMVTDIPGTTDASFGKKNL

Homology

[Close]

BLAST of Cla006196 vs. Swiss-Prot
Match: CET1_TOBAC (CEN-like protein 1 OS=Nicotiana tabacum GN=CET1 PE=2 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 1.3e-40
Identity = 72/105 (68.57%), Postives = 93/105 (88.57%), Query Frame = 1


Query: 1   MSRGIIEPLIVGRVVGDVVDIFSPNVKMNVIYNSFKQVANGHELLPSLISSKPRVEVGGD 60
           M+  ++EPL+V RV+G+VVD F+P+VK+NVIYN  KQV NGHEL+P++I++KPRVE+GG+
Sbjct: 1   MASRVVEPLVVARVIGEVVDSFNPSVKLNVIYNGSKQVFNGHELMPAVIAAKPRVEIGGE 60

Query: 61  DMRSAFTLIMIDPDAPSPSDPYLREYLHWMVTDIPGTTDASFGKK 106
           DMRSA+TLIM DPD P PSDPYLRE+LHW+VTDIPG+TD+SFG++
Sbjct: 61  DMRSAYTLIMTDPDVPGPSDPYLREHLHWIVTDIPGSTDSSFGRE 105

[Close]

BLAST of Cla006196 vs. Swiss-Prot
Match: BFT_ARATH (Protein BROTHER of FT and TFL 1 OS=Arabidopsis thaliana GN=BFT PE=3 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 3.2e-39
Identity = 74/100 (74.00%), Postives = 88/100 (88.00%), Query Frame = 1


Query: 6   IEPLIVGRVVGDVVDIFSPNVKMNVIYNSFKQVANGHELLPSLISSKPRVEVGGDDMRSA 65
           IEPLIVGRV+GDV+++F+P+V M V +NS   V+NGHEL PSL+ SKPRVE+GG D+RS 
Sbjct: 5   IEPLIVGRVIGDVLEMFNPSVTMRVTFNSNTIVSNGHELAPSLLLSKPRVEIGGQDLRSF 64

Query: 66  FTLIMIDPDAPSPSDPYLREYLHWMVTDIPGTTDASFGKK 106
           FTLIM+DPDAPSPS+PY+REYLHWMVTDIPGTTDASFG++
Sbjct: 65  FTLIMMDPDAPSPSNPYMREYLHWMVTDIPGTTDASFGRE 104

[Close]

BLAST of Cla006196 vs. Swiss-Prot
Match: CET2_TOBAC (CEN-like protein 2 OS=Nicotiana tabacum GN=CET2 PE=2 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 2.7e-38
Identity = 72/105 (68.57%), Postives = 86/105 (81.90%), Query Frame = 1


Query: 1   MSRGIIEPLIVGRVVGDVVDIFSPNVKMNVIYNSFKQVANGHELLPSLISSKPRVEVGGD 60
           M   + +PL++GRV+G+VVD F+P+VKM+V YNS K V NGHEL PS ++SKPRVEV G 
Sbjct: 1   MGSKMSDPLVIGRVIGEVVDYFTPSVKMSVTYNSSKHVYNGHELFPSSVTSKPRVEVHGG 60

Query: 61  DMRSAFTLIMIDPDAPSPSDPYLREYLHWMVTDIPGTTDASFGKK 106
           D+RS FT+IMIDPD P PSDPYLRE+LHW+VTDIPGTTD SFGK+
Sbjct: 61  DLRSFFTMIMIDPDVPGPSDPYLREHLHWIVTDIPGTTDCSFGKE 105

[Close]

BLAST of Cla006196 vs. Swiss-Prot
Match: CET4_TOBAC (CEN-like protein 4 OS=Nicotiana tabacum GN=CET4 PE=2 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 3.6e-38
Identity = 72/105 (68.57%), Postives = 86/105 (81.90%), Query Frame = 1


Query: 1   MSRGIIEPLIVGRVVGDVVDIFSPNVKMNVIYNSFKQVANGHELLPSLISSKPRVEVGGD 60
           M   + +PL++GRV+G+VVD F+P+VKM+V YNS K V NGHEL PS ++SKPRVEV G 
Sbjct: 1   MGSKMSDPLVIGRVIGEVVDYFTPSVKMSVTYNSSKHVYNGHELFPSSVTSKPRVEVHGG 60

Query: 61  DMRSAFTLIMIDPDAPSPSDPYLREYLHWMVTDIPGTTDASFGKK 106
           D+RS FTLIMIDPD P PSDPYLRE+LHW+VTDIPGTTD SFG++
Sbjct: 61  DLRSFFTLIMIDPDVPGPSDPYLREHLHWIVTDIPGTTDCSFGRE 105

[Close]

BLAST of Cla006196 vs. Swiss-Prot
Match: SELFP_SOLLC (Protein SELF-PRUNING OS=Solanum lycopersicum GN=SP PE=2 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 4.7e-38
Identity = 71/105 (67.62%), Postives = 86/105 (81.90%), Query Frame = 1


Query: 1   MSRGIIEPLIVGRVVGDVVDIFSPNVKMNVIYNSFKQVANGHELLPSLISSKPRVEVGGD 60
           M+  + EPL++GRV+G+VVD F P+VKM+V+YN+ K V NGHE  PS ++SKPRVEV G 
Sbjct: 1   MASKMCEPLVIGRVIGEVVDYFCPSVKMSVVYNNNKHVYNGHEFFPSSVTSKPRVEVHGG 60

Query: 61  DMRSAFTLIMIDPDAPSPSDPYLREYLHWMVTDIPGTTDASFGKK 106
           D+RS FTLIMIDPD P PSDPYLRE+LHW+VTDIPGTTD SFG++
Sbjct: 61  DLRSFFTLIMIDPDVPGPSDPYLREHLHWIVTDIPGTTDCSFGRE 105

[Close]

BLAST of Cla006196 vs. TrEMBL
Match: B9ZYL4_CUCSA (TFL1-like protein OS=Cucumis sativus GN=CsTFL1LC2 PE=2 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 3.3e-46
Identity = 94/101 (93.07%), Postives = 96/101 (95.05%), Query Frame = 1


Query: 5   IIEPLIVGRVVGDVVDIFSPNVKMNVIYNSFKQVANGHELLPSLISSKPRVEVGGDDMRS 64
           IIEPLIVGRVVGDVVD F PNVKMNVIYNS KQVANGHELLPSLIS KPRVEV GDDMRS
Sbjct: 10  IIEPLIVGRVVGDVVDNFVPNVKMNVIYNSSKQVANGHELLPSLISFKPRVEVAGDDMRS 69

Query: 65  AFTLIMIDPDAPSPSDPYLREYLHWMVTDIPGTTDASFGKK 106
           AFTLIM+DPDAPSPSDPYLREYLHWMVTDIPGTTDASFGK+
Sbjct: 70  AFTLIMVDPDAPSPSDPYLREYLHWMVTDIPGTTDASFGKE 110

[Close]

BLAST of Cla006196 vs. TrEMBL
Match: A0A0J8BG86_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g066330 PE=4 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 5.4e-41
Identity = 78/105 (74.29%), Postives = 98/105 (93.33%), Query Frame = 1


Query: 1   MSRGIIEPLIVGRVVGDVVDIFSPNVKMNVIYNSFKQVANGHELLPSLISSKPRVEVGGD 60
           M+RG+ EPLI+GRV+G+V+DIF+P+V +NV YNS KQV NGHEL+P+++ SKPRVE+GG+
Sbjct: 1   MARGV-EPLIIGRVIGEVIDIFNPSVTLNVTYNSSKQVCNGHELMPAVVVSKPRVEIGGE 60

Query: 61  DMRSAFTLIMIDPDAPSPSDPYLREYLHWMVTDIPGTTDASFGKK 106
           DMRSA+TLIM+DPDAPSPSDPYLRE+LHW+VTDIPGTTD SFGK+
Sbjct: 61  DMRSAYTLIMVDPDAPSPSDPYLREHLHWIVTDIPGTTDISFGKE 104

[Close]

BLAST of Cla006196 vs. TrEMBL
Match: E3UKE9_BETVU (Brother of FT AND TFL1-like protein BFT1 OS=Beta vulgaris GN=BFT1 PE=2 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 5.4e-41
Identity = 78/105 (74.29%), Postives = 98/105 (93.33%), Query Frame = 1


Query: 1   MSRGIIEPLIVGRVVGDVVDIFSPNVKMNVIYNSFKQVANGHELLPSLISSKPRVEVGGD 60
           M+RG+ EPLI+GRV+G+V+DIF+P+V +NV YNS KQV NGHEL+P+++ SKPRVE+GG+
Sbjct: 1   MARGV-EPLIIGRVIGEVIDIFNPSVTLNVTYNSSKQVCNGHELMPAVVVSKPRVEIGGE 60

Query: 61  DMRSAFTLIMIDPDAPSPSDPYLREYLHWMVTDIPGTTDASFGKK 106
           DMRSA+TLIM+DPDAPSPSDPYLRE+LHW+VTDIPGTTD SFGK+
Sbjct: 61  DMRSAYTLIMVDPDAPSPSDPYLREHLHWIVTDIPGTTDISFGKE 104

[Close]

BLAST of Cla006196 vs. TrEMBL
Match: M5X8I1_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa021829mg PE=4 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 5.4e-41
Identity = 80/107 (74.77%), Postives = 99/107 (92.52%), Query Frame = 1


Query: 1   MSRGIIEPLIVGRVVGDVVDIFSPNVKMNVIYNSFKQVANGHELLPSLISSKPRVEVGGD 60
           MSR ++EPL +GRV+G+VVD F+P+V+M V+YN  +QVANGHEL+PS+IS+KPRVE+GGD
Sbjct: 1   MSR-MVEPLTLGRVIGEVVDSFTPSVRMKVVYNPNRQVANGHELMPSVISAKPRVEIGGD 60

Query: 61  DMRSAFTLIMIDPDAPSPSDPYLREYLHWMVTDIPGTTDASFGKKNL 108
           DMR+A+TLIM DPD PSPSDPYLRE+LHWMVTDIPGTTDASFGK+N+
Sbjct: 61  DMRAAYTLIMTDPDFPSPSDPYLREHLHWMVTDIPGTTDASFGKENM 106

[Close]

BLAST of Cla006196 vs. TrEMBL
Match: M1B4W4_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400014322 PE=4 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 3.5e-40
Identity = 77/103 (74.76%), Postives = 94/103 (91.26%), Query Frame = 1


Query: 2   SRGIIEPLIVGRVVGDVVDIFSPNVKMNVIYNSFKQVANGHELLPSLISSKPRVEVGGDD 61
           SRG  EPL VGRV+G+VVD FSP+VKM VIYN  KQV+NGHE++P++++++PRVE+GG+D
Sbjct: 3   SRGTCEPLAVGRVIGEVVDSFSPSVKMKVIYNGSKQVSNGHEIMPAVVATQPRVEIGGED 62

Query: 62  MRSAFTLIMIDPDAPSPSDPYLREYLHWMVTDIPGTTDASFGK 105
           MRSA+TLIM DPDAPSPSDPYLRE+LHW+VTDIPGTTD SFGK
Sbjct: 63  MRSAYTLIMTDPDAPSPSDPYLREHLHWIVTDIPGTTDISFGK 105

[Close]

BLAST of Cla006196 vs. NCBI nr
Match: gi|525507244|ref|NP_001267660.1| (CEN-like protein 1-like [Cucumis sativus])

HSP 1 Score: 192.2 bits (487), Expect = 4.7e-46
Identity = 94/101 (93.07%), Postives = 96/101 (95.05%), Query Frame = 1


Query: 5   IIEPLIVGRVVGDVVDIFSPNVKMNVIYNSFKQVANGHELLPSLISSKPRVEVGGDDMRS 64
           IIEPLIVGRVVGDVVD F PNVKMNVIYNS KQVANGHELLPSLIS KPRVEV GDDMRS
Sbjct: 10  IIEPLIVGRVVGDVVDNFVPNVKMNVIYNSSKQVANGHELLPSLISFKPRVEVAGDDMRS 69

Query: 65  AFTLIMIDPDAPSPSDPYLREYLHWMVTDIPGTTDASFGKK 106
           AFTLIM+DPDAPSPSDPYLREYLHWMVTDIPGTTDASFGK+
Sbjct: 70  AFTLIMVDPDAPSPSDPYLREYLHWMVTDIPGTTDASFGKE 110

[Close]

BLAST of Cla006196 vs. NCBI nr
Match: gi|659077407|ref|XP_008439188.1| (PREDICTED: CEN-like protein 1 [Cucumis melo])

HSP 1 Score: 191.8 bits (486), Expect = 6.1e-46
Identity = 94/101 (93.07%), Postives = 96/101 (95.05%), Query Frame = 1


Query: 5   IIEPLIVGRVVGDVVDIFSPNVKMNVIYNSFKQVANGHELLPSLISSKPRVEVGGDDMRS 64
           IIEPLIVG+VVGDVVD F PNVKMNVIYNS KQVANGHELLP LISSKPRVEV GDDMRS
Sbjct: 10  IIEPLIVGKVVGDVVDNFVPNVKMNVIYNSSKQVANGHELLPCLISSKPRVEVAGDDMRS 69

Query: 65  AFTLIMIDPDAPSPSDPYLREYLHWMVTDIPGTTDASFGKK 106
           AFTLIMIDPDAPSPSDPYLREYLHWMVTDIPGTTDASFGK+
Sbjct: 70  AFTLIMIDPDAPSPSDPYLREYLHWMVTDIPGTTDASFGKE 110

[Close]

BLAST of Cla006196 vs. NCBI nr
Match: gi|1009122484|ref|XP_015878026.1| (PREDICTED: CEN-like protein 1 [Ziziphus jujuba])

HSP 1 Score: 180.6 bits (457), Expect = 1.4e-42
Identity = 84/101 (83.17%), Postives = 96/101 (95.05%), Query Frame = 1


Query: 5   IIEPLIVGRVVGDVVDIFSPNVKMNVIYNSFKQVANGHELLPSLISSKPRVEVGGDDMRS 64
           I+EPL VGRVVG+VVDIFSP+V+MNVIYNS KQVANGHEL+PS+I SKPRVE+GGDD+R+
Sbjct: 4   IMEPLAVGRVVGEVVDIFSPSVRMNVIYNSNKQVANGHELMPSVIVSKPRVEIGGDDLRT 63

Query: 65  AFTLIMIDPDAPSPSDPYLREYLHWMVTDIPGTTDASFGKK 106
           A+TLIM DPDAPSPSDPYLRE+LHWMVTDIPGTTD SFGK+
Sbjct: 64  AYTLIMTDPDAPSPSDPYLREHLHWMVTDIPGTTDVSFGKE 104

[Close]

BLAST of Cla006196 vs. NCBI nr
Match: gi|645257136|ref|XP_008234274.1| (PREDICTED: CEN-like protein 1 [Prunus mume])

HSP 1 Score: 174.9 bits (442), Expect = 7.7e-41
Identity = 80/107 (74.77%), Postives = 99/107 (92.52%), Query Frame = 1


Query: 1   MSRGIIEPLIVGRVVGDVVDIFSPNVKMNVIYNSFKQVANGHELLPSLISSKPRVEVGGD 60
           MSR ++EPL +GRV+G+VVD F+P+VK+ V+YN  +QVANGHEL+PS+IS+KPRVE+GGD
Sbjct: 1   MSR-MVEPLTLGRVIGEVVDSFTPSVKLKVVYNPNRQVANGHELMPSVISAKPRVEIGGD 60

Query: 61  DMRSAFTLIMIDPDAPSPSDPYLREYLHWMVTDIPGTTDASFGKKNL 108
           DMR+A+TLIM DPD PSPSDPYLRE+LHWMVTDIPGTTDASFGK+N+
Sbjct: 61  DMRAAYTLIMTDPDFPSPSDPYLREHLHWMVTDIPGTTDASFGKENM 106

[Close]

BLAST of Cla006196 vs. NCBI nr
Match: gi|731363517|ref|XP_010693475.1| (PREDICTED: CEN-like protein 1 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 174.9 bits (442), Expect = 7.7e-41
Identity = 78/105 (74.29%), Postives = 98/105 (93.33%), Query Frame = 1


Query: 1   MSRGIIEPLIVGRVVGDVVDIFSPNVKMNVIYNSFKQVANGHELLPSLISSKPRVEVGGD 60
           M+RG+ EPLI+GRV+G+V+DIF+P+V +NV YNS KQV NGHEL+P+++ SKPRVE+GG+
Sbjct: 1   MARGV-EPLIIGRVIGEVIDIFNPSVTLNVTYNSSKQVCNGHELMPAVVVSKPRVEIGGE 60

Query: 61  DMRSAFTLIMIDPDAPSPSDPYLREYLHWMVTDIPGTTDASFGKK 106
           DMRSA+TLIM+DPDAPSPSDPYLRE+LHW+VTDIPGTTD SFGK+
Sbjct: 61  DMRSAYTLIMVDPDAPSPSDPYLREHLHWIVTDIPGTTDISFGKE 104

The following BLAST results are available for this feature:

BLAST of Cla006196 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CET1_TOBAC	1.3e-40	68.57	CEN-like protein 1 OS=Nicotiana tabacum GN=CET1 PE=2 SV=1	[more]
BFT_ARATH	3.2e-39	74.00	Protein BROTHER of FT and TFL 1 OS=Arabidopsis thaliana GN=BFT PE=3 SV=1	[more]
CET2_TOBAC	2.7e-38	68.57	CEN-like protein 2 OS=Nicotiana tabacum GN=CET2 PE=2 SV=1	[more]
CET4_TOBAC	3.6e-38	68.57	CEN-like protein 4 OS=Nicotiana tabacum GN=CET4 PE=2 SV=1	[more]
SELFP_SOLLC	4.7e-38	67.62	Protein SELF-PRUNING OS=Solanum lycopersicum GN=SP PE=2 SV=1	[more]

BLAST of Cla006196 vs. TrEMBL


Match Name	E-value	Identity	Description
B9ZYL4_CUCSA	3.3e-46	93.07	TFL1-like protein OS=Cucumis sativus GN=CsTFL1LC2 PE=2 SV=1	[more]
A0A0J8BG86_BETVU	5.4e-41	74.29	Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g066330 PE=4 S...	[more]
E3UKE9_BETVU	5.4e-41	74.29	Brother of FT AND TFL1-like protein BFT1 OS=Beta vulgaris GN=BFT1 PE=2 SV=1	[more]
M5X8I1_PRUPE	5.4e-41	74.77	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa021829mg PE=4 SV=1	[more]
M1B4W4_SOLTU	3.5e-40	74.76	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400014322 PE=4 SV=1	[more]

BLAST of Cla006196 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|525507244\|ref\|NP_001267660.1\|	4.7e-46	93.07	CEN-like protein 1-like [Cucumis sativus]	[more]
gi\|659077407\|ref\|XP_008439188.1\|	6.1e-46	93.07	PREDICTED: CEN-like protein 1 [Cucumis melo]	[more]
gi\|1009122484\|ref\|XP_015878026.1\|	1.4e-42	83.17	PREDICTED: CEN-like protein 1 [Ziziphus jujuba]	[more]
gi\|645257136\|ref\|XP_008234274.1\|	7.7e-41	74.77	PREDICTED: CEN-like protein 1 [Prunus mume]	[more]
gi\|731363517\|ref\|XP_010693475.1\|	7.7e-41	74.29	PREDICTED: CEN-like protein 1 [Beta vulgaris subsp. vulgaris]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR001858	Phosphotidylethanolamine-bd_CS
IPR008914	PEBP

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009910	negative regulation of flower development
biological_process	GO:1903506	regulation of nucleic acid-templated transcription
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0010228	vegetative to reproductive phase transition of meristem
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005667	transcription factor complex
molecular_function	GO:0003712	transcription cofactor activity

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cla006196	Cla006196	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cla006196	Cla006196.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cla006196.1.cds4	Cla006196.1.cds4	CDS
Cla006196.1.cds3	Cla006196.1.cds3	CDS
Cla006196.1.cds2	Cla006196.1.cds2	CDS
Cla006196.1.cds1	Cla006196.1.cds1	CDS

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001858	Phosphatidylethanolamine-binding, conserved site	PROSITE	PS01220	PBP	coord: 66..88 scor
IPR008914	Phosphatidylethanolamine-binding protein	GENE3D	G3DSA:3.90.280.10		coord: 5..104 score: 1.1
IPR008914	Phosphatidylethanolamine-binding protein	PFAM	PF01161	PBP	coord: 53..98 score: 2.
IPR008914	Phosphatidylethanolamine-binding protein	unknown	SSF49777	PEBP-like	coord: 13..104 score: 2.75
None	No IPR available	PANTHER	PTHR11362	PHOSPHATIDYLETHANOLAMINE-BINDING PROTEIN	coord: 1..102 score: 4.8
None	No IPR available	PANTHER	PTHR11362:SF22	PROTEIN BROTHER OF FT AND TFL 1	coord: 1..102 score: 4.8