Cla006080.1 (mRNA) Watermelon (97103) v1

Overview
NameCla006080
TypemRNA
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionGlutathione peroxidase (AHRD V1 *-*- B9T4A6_RICCO); contains Interpro domain(s) IPR000889 Glutathione peroxidase
LocationChr7 : 2894455 .. 2895327 (+)
Sequence length375
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTGCTTCTCAATCAGTCCCTGAGAAGTCCATTCATGAATTCGTGGTGAAGGTAAATTCTCATCCTCCATTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCAAAGACGCTTCAAAACGGAATCTAACGAAGTAAGTCCTTTGGCCTGTTGAAGGATGCCAGAGGACAAGACGTTGACCTTAGTATCTACCGGGGAAAGGTTCTTCTTGTGGTAAATGTTGCTTCCAAATGGTGCGTCTTCTTTTTCTCTGTACTTTGTTCCTATCGGGTACTCGAATTCATGGGGTTCTAATTCCTGGAGAATTTTGAATTGTTTGGGCAGTGGTTACACAGATTCGAATTATACCCAGCTGACGGAACTTTACAGCAAATACAAAGAAAAAGGTCCGTACGTTTCTTACTTCTACTTCTATTGATTTTCCTAATTCTCATGTTAGCCAGAATTTTATTTCTTACAGGTATTGGTTCCTCTTCTTCTTTTGTGCAATGGTGGATTATTAGAGTTTCCTCGAAGGCTATACTATAATCTTCTCTTTGGTTTAGTTTGGTCCATCTGCTTTTTTACTTCGTTAACTGTATCTATACACTGATTTACAGGATTGGAGATCTTGGCTTTTCCATGCAATCAGTTTTTGAATCAGGAACCTGGATCCAGCGAGGAGGCACAGGAATTTGCCTGTACAAGATTCAAAGCCGAGTATCCAATATTCCAAAAGGTATTTTAGCGTTTTTTTTTTAGTGATTGTAGTTAGTTTGTTACCTATATTTTTTATTTTGTAACTAGAGCTAGTTAGATATGTTCTTAATTAAATTAACTCTTATACTGTACAGATAACCAGAGGCTTTTTCTGATAATTCAATGA

mRNA sequence

ATGGGTGCTTCTCAATCAGTCCCTGAGAAGTCCATTCATGAATTCGTGGTGAAGGATGCCAGAGGACAAGACGTTGACCTTAGTATCTACCGGGGAAAGGTTCTTCTTGTGGTAAATGTTGCTTCCAAATGTGGTTACACAGATTCGAATTATACCCAGCTGACGGAACTTTACAGCAAATACAAAGAAAAAGGTATTGGTTCCTCTTCTTCTTTTGTGCAATGGATTGGAGATCTTGGCTTTTCCATGCAATCAGTTTTTGAATCAGGAACCTGGATCCAGCGAGGAGGCACAGGAATTTGCCTGTACAAGATTCAAAGCCGAGTATCCAATATTCCAAAAGATAACCAGAGGCTTTTTCTGATAATTCAATGA

Coding sequence (CDS)

ATGGGTGCTTCTCAATCAGTCCCTGAGAAGTCCATTCATGAATTCGTGGTGAAGGATGCCAGAGGACAAGACGTTGACCTTAGTATCTACCGGGGAAAGGTTCTTCTTGTGGTAAATGTTGCTTCCAAATGTGGTTACACAGATTCGAATTATACCCAGCTGACGGAACTTTACAGCAAATACAAAGAAAAAGGTATTGGTTCCTCTTCTTCTTTTGTGCAATGGATTGGAGATCTTGGCTTTTCCATGCAATCAGTTTTTGAATCAGGAACCTGGATCCAGCGAGGAGGCACAGGAATTTGCCTGTACAAGATTCAAAGCCGAGTATCCAATATTCCAAAAGATAACCAGAGGCTTTTTCTGATAATTCAATGA

Protein sequence

MGASQSVPEKSIHEFVVKDARGQDVDLSIYRGKVLLVVNVASKCGYTDSNYTQLTELYSKYKEKGIGSSSSFVQWIGDLGFSMQSVFESGTWIQRGGTGICLYKIQSRVSNIPKDNQRLFLIIQ
Homology
[Close]
BLAST of Cla006080 vs. Swiss-Prot
Match: GPX4_ARATH (Probable glutathione peroxidase 4 OS=Arabidopsis thaliana GN=GPX4 PE=2 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.6e-21
Identity = 45/64 (70.31%), Postives = 58/64 (90.62%), Query Frame = 1 

Query: 1  MGASQSVPEKSIHEFVVKDARGQDVDLSIYRGKVLLVVNVASKCGYTDSNYTQLTELYSK 60
          MGAS SVPE+S+H+F VKD+ G+D+++SIY+GKVLL+VNVASKCG+T++NYTQLTELY K
Sbjct: 1  MGASASVPERSVHQFTVKDSSGKDLNMSIYQGKVLLIVNVASKCGFTETNYTQLTELYRK 60

Query: 61 YKEK 65
          YK++
Sbjct: 61 YKDQ 64

[Close]
BLAST of Cla006080 vs. Swiss-Prot
Match: GPX5_ARATH (Probable glutathione peroxidase 5 OS=Arabidopsis thaliana GN=GPX5 PE=1 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 2.1e-21
Identity = 50/67 (74.63%), Postives = 58/67 (86.57%), Query Frame = 1 

Query: 1  MGASQS--VPEKSIHEFVVKDARGQDVDLSIYRGKVLLVVNVASKCGYTDSNYTQLTELY 60
          MGAS S  V EKSIH+F VKD+ G++VDLS+Y+GKVLLVVNVASKCG+T+SNYTQLTELY
Sbjct: 1  MGASSSSSVSEKSIHQFTVKDSSGKEVDLSVYQGKVLLVVNVASKCGFTESNYTQLTELY 60

Query: 61 SKYKEKG 66
           KYK++G
Sbjct: 61 RKYKDQG 67

[Close]
BLAST of Cla006080 vs. Swiss-Prot
Match: GPX4_SPIOL (Probable phospholipid hydroperoxide glutathione peroxidase OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 1.8e-20
Identity = 45/66 (68.18%), Postives = 54/66 (81.82%), Query Frame = 1 

Query: 1  MGASQSVPEKSIHEFVVKDARGQDVDLSIYRGKVLLVVNVASKCGYTDSNYTQLTELYSK 60
          M +  S   KS+HEFVV+DARG DVDLSIY+GKVLL+VNVAS+CG T+SNYT++TELY K
Sbjct: 1  MASDSSAQPKSVHEFVVRDARGNDVDLSIYKGKVLLIVNVASQCGLTNSNYTEMTELYEK 60

Query: 61 YKEKGI 67
          Y+E G+
Sbjct: 61 YRELGL 66

[Close]
BLAST of Cla006080 vs. Swiss-Prot
Match: GPX4_MESCR (Probable phospholipid hydroperoxide glutathione peroxidase OS=Mesembryanthemum crystallinum GN=GPXMC1 PE=2 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 1.1e-19
Identity = 46/65 (70.77%), Postives = 56/65 (86.15%), Query Frame = 1 

Query: 3  ASQSVPE-KSIHEFVVKDARGQDVDLSIYRGKVLLVVNVASKCGYTDSNYTQLTELYSKY 62
          ASQS  + KSIH+F+VKDARG DVDLSIY+GKVLL+VNVAS+CG T+SNY +LT+LY +Y
Sbjct: 2  ASQSTDQPKSIHDFIVKDARGNDVDLSIYKGKVLLIVNVASQCGLTNSNYPELTKLYEQY 61

Query: 63 KEKGI 67
          K+KG+
Sbjct: 62 KDKGL 66

[Close]
BLAST of Cla006080 vs. Swiss-Prot
Match: GPX4_NICSY (Probable phospholipid hydroperoxide glutathione peroxidase OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 4.3e-19
Identity = 43/64 (67.19%), Postives = 54/64 (84.38%), Query Frame = 1 

Query: 3  ASQSVPEKSIHEFVVKDARGQDVDLSIYRGKVLLVVNVASKCGYTDSNYTQLTELYSKYK 62
          ASQS   +SI++F VKDA+G DVDLSIY+GKVL++VNVAS+CG T+SNYT LTE+Y KYK
Sbjct: 2  ASQSSKPQSIYDFTVKDAKGNDVDLSIYKGKVLIIVNVASQCGLTNSNYTDLTEIYKKYK 61

Query: 63 EKGI 67
          ++G+
Sbjct: 62 DQGL 65

[Close]
BLAST of Cla006080 vs. TrEMBL
Match: A0A0A0KE99_CUCSA (Glutathione peroxidase OS=Cucumis sativus GN=Csa_6G408810 PE=3 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 2.5e-26
Identity = 61/66 (92.42%), Postives = 65/66 (98.48%), Query Frame = 1 

Query: 1  MGASQSVPEKSIHEFVVKDARGQDVDLSIYRGKVLLVVNVASKCGYTDSNYTQLTELYSK 60
          MG+SQSV EKSIHEFVVKDARGQD+DLSIYRGKVLLVVNVASKCGYTDSNYTQLTELY+K
Sbjct: 1  MGSSQSVSEKSIHEFVVKDARGQDLDLSIYRGKVLLVVNVASKCGYTDSNYTQLTELYTK 60

Query: 61 YKEKGI 67
          YKEKG+
Sbjct: 61 YKEKGL 66

[Close]
BLAST of Cla006080 vs. TrEMBL
Match: J7H437_9ROSI (Glutathione peroxidase OS=Dimocarpus longan PE=3 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 1.8e-24
Identity = 56/65 (86.15%), Postives = 64/65 (98.46%), Query Frame = 1 

Query: 1  MGASQSVPEKSIHEFVVKDARGQDVDLSIYRGKVLLVVNVASKCGYTDSNYTQLTELYSK 60
          MGA++SVPEKSIHEF+VKD+RG+DVDLSIYRGKVLLVVNVASKCG+TDSNYTQL+ LYSK
Sbjct: 1  MGAAESVPEKSIHEFIVKDSRGKDVDLSIYRGKVLLVVNVASKCGFTDSNYTQLSALYSK 60

Query: 61 YKEKG 66
          YK+KG
Sbjct: 61 YKDKG 65

[Close]
BLAST of Cla006080 vs. TrEMBL
Match: I6PBY3_9ROSI (Glutathione peroxidase OS=Dimocarpus longan PE=2 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 1.8e-24
Identity = 56/65 (86.15%), Postives = 64/65 (98.46%), Query Frame = 1 

Query: 1  MGASQSVPEKSIHEFVVKDARGQDVDLSIYRGKVLLVVNVASKCGYTDSNYTQLTELYSK 60
          MGA++SVPEKSIHEF+VKD+RG+DVDLSIYRGKVLLVVNVASKCG+TDSNYTQL+ LYSK
Sbjct: 1  MGAAESVPEKSIHEFIVKDSRGKDVDLSIYRGKVLLVVNVASKCGFTDSNYTQLSALYSK 60

Query: 61 YKEKG 66
          YK+KG
Sbjct: 61 YKDKG 65

[Close]
BLAST of Cla006080 vs. TrEMBL
Match: B9T4A6_RICCO (Glutathione peroxidase OS=Ricinus communis GN=RCOM_0176350 PE=3 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 3.1e-24
Identity = 56/65 (86.15%), Postives = 63/65 (96.92%), Query Frame = 1 

Query: 1    MGASQSVPEKSIHEFVVKDARGQDVDLSIYRGKVLLVVNVASKCGYTDSNYTQLTELYSK 60
            MGAS SVPEKSIHEF VKDARGQDVDLSIY+GKVLLVVNVASKCG+TD+NYTQLT+LY+K
Sbjct: 1390 MGASPSVPEKSIHEFTVKDARGQDVDLSIYKGKVLLVVNVASKCGFTDTNYTQLTDLYNK 1449

Query: 61   YKEKG 66
            YK++G
Sbjct: 1450 YKDQG 1454

[Close]
BLAST of Cla006080 vs. TrEMBL
Match: A0A0B0PMW5_GOSAR (Glutathione peroxidase OS=Gossypium arboreum GN=F383_10473 PE=3 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 5.3e-24
Identity = 54/66 (81.82%), Postives = 65/66 (98.48%), Query Frame = 1 

Query: 1  MGASQSVPEKSIHEFVVKDARGQDVDLSIYRGKVLLVVNVASKCGYTDSNYTQLTELYSK 60
          MGAS+SVP+KSIHEF VK+++GQDVDLS+Y+GKVLLVVNVASKCG+TDSNYTQLTELY+K
Sbjct: 1  MGASESVPQKSIHEFTVKNSKGQDVDLSMYKGKVLLVVNVASKCGFTDSNYTQLTELYNK 60

Query: 61 YKEKGI 67
          YK+KG+
Sbjct: 61 YKDKGL 66

[Close]
BLAST of Cla006080 vs. NCBI nr
Match: gi|659096990|ref|XP_008449386.1| (PREDICTED: probable glutathione peroxidase 5 [Cucumis melo])

HSP 1 Score: 128.6 bits (322), Expect = 7.4e-27
Identity = 63/66 (95.45%), Postives = 65/66 (98.48%), Query Frame = 1 

Query: 1  MGASQSVPEKSIHEFVVKDARGQDVDLSIYRGKVLLVVNVASKCGYTDSNYTQLTELYSK 60
          MGASQSV EKSIHEFVVKDARGQDVDLSIYRGKVLLVVNVASKCGYTDSNYTQLTELY+K
Sbjct: 1  MGASQSVSEKSIHEFVVKDARGQDVDLSIYRGKVLLVVNVASKCGYTDSNYTQLTELYTK 60

Query: 61 YKEKGI 67
          YKEKG+
Sbjct: 61 YKEKGL 66

[Close]
BLAST of Cla006080 vs. NCBI nr
Match: gi|449444653|ref|XP_004140088.1| (PREDICTED: probable glutathione peroxidase 5 [Cucumis sativus])

HSP 1 Score: 126.3 bits (316), Expect = 3.6e-26
Identity = 61/66 (92.42%), Postives = 65/66 (98.48%), Query Frame = 1 

Query: 1  MGASQSVPEKSIHEFVVKDARGQDVDLSIYRGKVLLVVNVASKCGYTDSNYTQLTELYSK 60
          MG+SQSV EKSIHEFVVKDARGQD+DLSIYRGKVLLVVNVASKCGYTDSNYTQLTELY+K
Sbjct: 1  MGSSQSVSEKSIHEFVVKDARGQDLDLSIYRGKVLLVVNVASKCGYTDSNYTQLTELYTK 60

Query: 61 YKEKGI 67
          YKEKG+
Sbjct: 61 YKEKGL 66

[Close]
BLAST of Cla006080 vs. NCBI nr
Match: gi|380862970|gb|AFF18778.1| (glutathione peroxidase [Dimocarpus longan])

HSP 1 Score: 120.2 bits (300), Expect = 2.6e-24
Identity = 56/65 (86.15%), Postives = 64/65 (98.46%), Query Frame = 1 

Query: 1  MGASQSVPEKSIHEFVVKDARGQDVDLSIYRGKVLLVVNVASKCGYTDSNYTQLTELYSK 60
          MGA++SVPEKSIHEF+VKD+RG+DVDLSIYRGKVLLVVNVASKCG+TDSNYTQL+ LYSK
Sbjct: 1  MGAAESVPEKSIHEFIVKDSRGKDVDLSIYRGKVLLVVNVASKCGFTDSNYTQLSALYSK 60

Query: 61 YKEKG 66
          YK+KG
Sbjct: 61 YKDKG 65

[Close]
BLAST of Cla006080 vs. NCBI nr
Match: gi|400532033|gb|AFP87136.1| (glutathione peroxidase 3 [Dimocarpus longan])

HSP 1 Score: 120.2 bits (300), Expect = 2.6e-24
Identity = 56/65 (86.15%), Postives = 64/65 (98.46%), Query Frame = 1 

Query: 1  MGASQSVPEKSIHEFVVKDARGQDVDLSIYRGKVLLVVNVASKCGYTDSNYTQLTELYSK 60
          MGA++SVPEKSIHEF+VKD+RG+DVDLSIYRGKVLLVVNVASKCG+TDSNYTQL+ LYSK
Sbjct: 1  MGAAESVPEKSIHEFIVKDSRGKDVDLSIYRGKVLLVVNVASKCGFTDSNYTQLSALYSK 60

Query: 61 YKEKG 66
          YK+KG
Sbjct: 61 YKDKG 65

[Close]
BLAST of Cla006080 vs. NCBI nr
Match: gi|223527139|gb|EEF29314.1| (glutathione peroxidase, putative [Ricinus communis])

HSP 1 Score: 119.4 bits (298), Expect = 4.5e-24
Identity = 56/65 (86.15%), Postives = 63/65 (96.92%), Query Frame = 1 

Query: 1    MGASQSVPEKSIHEFVVKDARGQDVDLSIYRGKVLLVVNVASKCGYTDSNYTQLTELYSK 60
            MGAS SVPEKSIHEF VKDARGQDVDLSIY+GKVLLVVNVASKCG+TD+NYTQLT+LY+K
Sbjct: 1390 MGASPSVPEKSIHEFTVKDARGQDVDLSIYKGKVLLVVNVASKCGFTDTNYTQLTDLYNK 1449

Query: 61   YKEKG 66
            YK++G
Sbjct: 1450 YKDQG 1454

The following BLAST results are available for this feature:
BLAST of Cla006080 vs. Swiss-Prot
Match NameE-valueIdentityDescription
GPX4_ARATH1.6e-2170.31Probable glutathione peroxidase 4 OS=Arabidopsis thaliana GN=GPX4 PE=2 SV=1[more]
GPX5_ARATH2.1e-2174.63Probable glutathione peroxidase 5 OS=Arabidopsis thaliana GN=GPX5 PE=1 SV=1[more]
GPX4_SPIOL1.8e-2068.18Probable phospholipid hydroperoxide glutathione peroxidase OS=Spinacia oleracea ... [more]
GPX4_MESCR1.1e-1970.77Probable phospholipid hydroperoxide glutathione peroxidase OS=Mesembryanthemum c... [more]
GPX4_NICSY4.3e-1967.19Probable phospholipid hydroperoxide glutathione peroxidase OS=Nicotiana sylvestr... [more]
BLAST of Cla006080 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KE99_CUCSA2.5e-2692.42Glutathione peroxidase OS=Cucumis sativus GN=Csa_6G408810 PE=3 SV=1[more]
J7H437_9ROSI1.8e-2486.15Glutathione peroxidase OS=Dimocarpus longan PE=3 SV=1[more]
I6PBY3_9ROSI1.8e-2486.15Glutathione peroxidase OS=Dimocarpus longan PE=2 SV=1[more]
B9T4A6_RICCO3.1e-2486.15Glutathione peroxidase OS=Ricinus communis GN=RCOM_0176350 PE=3 SV=1[more]
A0A0B0PMW5_GOSAR5.3e-2481.82Glutathione peroxidase OS=Gossypium arboreum GN=F383_10473 PE=3 SV=1[more]
BLAST of Cla006080 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659096990|ref|XP_008449386.1|7.4e-2795.45PREDICTED: probable glutathione peroxidase 5 [Cucumis melo][more]
gi|449444653|ref|XP_004140088.1|3.6e-2692.42PREDICTED: probable glutathione peroxidase 5 [Cucumis sativus][more]
gi|380862970|gb|AFF18778.1|2.6e-2486.15glutathione peroxidase [Dimocarpus longan][more]
gi|400532033|gb|AFP87136.1|2.6e-2486.15glutathione peroxidase 3 [Dimocarpus longan][more]
gi|223527139|gb|EEF29314.1|4.5e-2486.15glutathione peroxidase, putative [Ricinus communis][more]
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR000889Glutathione_peroxidase
IPR012336Thioredoxin-like_fold
Vocabulary: Molecular Function
TermDefinition
GO:0004602glutathione peroxidase activity
Vocabulary: Biological Process
TermDefinition
GO:0006979response to oxidative stress
GO:0055114oxidation-reduction process
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0006979 response to oxidative stress
biological_process GO:0006749 glutathione metabolic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0004602 glutathione peroxidase activity
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cla006080Cla006080gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cla006080Cla006080.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cla006080.1.cds1Cla006080.1.cds1CDS
Cla006080.1.cds2Cla006080.1.cds2CDS
Cla006080.1.cds3Cla006080.1.cds3CDS
Cla006080.1.cds4Cla006080.1.cds4CDS
Cla006080.1.cds5Cla006080.1.cds5CDS
Cla006080.1.cds6Cla006080.1.cds6CDS


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000889Glutathione peroxidasePANTHERPTHR11592GLUTATHIONE PEROXIDASEcoord: 9..66
score: 7.0
IPR000889Glutathione peroxidasePFAMPF00255GSHPxcoord: 12..66
score: 1.1
IPR000889Glutathione peroxidasePROFILEPS51355GLUTATHIONE_PEROXID_3coord: 2..65
score: 23
IPR012336Thioredoxin-like foldGENE3DG3DSA:3.40.30.10coord: 10..66
score: 1.0
IPR012336Thioredoxin-like foldunknownSSF52833Thioredoxin-likecoord: 10..66
score: 1.84
NoneNo IPR availablePANTHERPTHR11592:SF17GLUTATHIONE PEROXIDASE 4-RELATEDcoord: 9..66
score: 7.0