Cla005180.1 (mRNA) Watermelon (97103) v1

NameCla005180
TypemRNA
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionRetrotransposon protein (AHRD V1 *-*- E5GBB2_CUCME)
LocationChr3 : 28318307 .. 28320247 (+)
Sequence length531
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCTTTGGGGTTGGTTTGGATTATAAAACCAACCCCAAATACAATCAACCCAATCCTTCCCAGTTTCCGCCGCTTCCCAATGCACACTTTGCTCGATGTCTGCTCTCCCTCTCTCTCTTCTGTCGCCTTTTGTTGCCTTCTGTCCGCATTCACTCTTCCTATGCGTTGGTCGAAGCAGGCCATGTGTTGGTCGAAGCAGGTCATGCGTTGGTCGAAGTAGGCCATGCGTCGGTCGAAGCAGGTCATGCGTTGGTCGAAGCAGGCCATGCGTTGGTCGAAGTAGGCCTTGCATTGGTCGAAGGCTTGCATTGTTATTATTATATTGTTATAATTTGGTTGTTGGCTTATTAAACTTCGGTCGCTTCCATTTAAATCTTGCACTGTCACTCAAATTAATTTGAGTGGTTGGGTTGTTTAACTTCATTGATTCACATGCTTATATATACGAATTCTCTCCTATTTGTATATCACACACCATTTTGGAGAAGAAATTTTCTCTCCAAGTTCTTCTTTTCCAGTGAGTTCCCTTCAATCTTTTGCTATTTTTTATTTCTTTCTCCTTATGTTATGAATTATTTTTATTCAAACTTTCTTCTGTTTCATGTGATGGTGGACTTCTTGTTTGATATGTGCTCTATCCATTTGCCTCTTTAACCCGATTGACAGTCGAGTTCTAACGGTTACGTATGCATGCTCAGTTTTTTAATTGAATTTTTTTTCCTAGTCATGATGTTTACTTAGCTAACATGACTTTTTTTTTTTTTTGTCAGTGAGCAATCCTCCGAGGAAAATCATACTACCCGGTTGATGTGCAGTGCAAGACCATACATGCATGTTGTCTCCTGCACAATTTAATAATTCGAGAAATGAGACCAAATTCCTTACTCGACGAAGGAGAGGGAAGTCAGGGGGGACCAATACCAACAGACAATGAGAATATCGAATTTGTGGAGACATTTGATGCATTCACTGCATGGAGGGATAATATCGCAAATCAGATGTGGGCTGAATGGAATGCAAACTAAAGACGCCCTTGGGAAATTCTATATATTACCTTTTTTTTTTTTTTTGGAGAAGATAGGAATTGAATTTTTTTTTTTGTGTGTATAAAGTATTTTGTTGGTGCCCAACGTGTACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTGGTCCAGTGTGTGCAGTCTGGACACTGGCGAGCTGATAACGGGACTTTCCCGACCTGGATTCCTATCAAACATACTATGGATGATGGAGCAGAGGATACCAGGGTGTTCCATACAGGTCAGCCCACATCTGGAGTCAAGGGTCAGGACCCTGAAAAGACAGTACAGCGCGATCGCTAAAATGTTAGGCCCAGGCTATCACACCTTACTTTTAGGAAACTGATGCGTTGAAGGGTCTATGAAGAAAAGAAGTAAGATATTTGACGCATGGGTCAAGGTAATTTAATTACATGTTTTATTTATTTCTTCTTCGTTTAAATTTGTATAGGCCCTAACATAACACAAGTCACCTTTAACAGAGTCATCCGAGTGCAAAAGAATTGCGCCATATTCCATACTATGATGAATTGGCCATCGTATTCGGCAAAGACAGAGCCACAGGGAGTTATGCAACCACCACTGCAGAGGTCGGATCTGAACCTGTTATGGAAGAGGAGAAGGAGTACATCCTGAACAACCAGTCCCCAGACTTTGAGAACTTCTATATTCCTGATTCACCTTTTGCTAGCTCGCCCCTGTCAGAGGACTTTTCGACTACCCAGCGGTAG

mRNA sequence

ATGGGCTTTGGGGTTGGTTTGGATTATAAAACCAACCCCAAATACAATCAACCCAATCCTTCCCAGTTTCCGCCGCTTCCCAATGCACACTTTGCTCGATGTCTGCTCTCCCTCTCTCTCTTCTGTCGCCTTTTGTTGCCTTCTGTCCGCATTCACTCTTCCTATGCGTTGGTCGAAGCAGGCCATGTGTTGGTCGAAGCAGGTCATGCGTTGGTCGAAGTAGGCCATGCGTCGGTCGAAGCAGGTCATGCGTTGGTCGAAGCAGGCCATGCGTTGGTCGAAAGTCATCCGAGTGCAAAAGAATTGCGCCATATTCCATACTATGATGAATTGGCCATCGTATTCGGCAAAGACAGAGCCACAGGGAGTTATGCAACCACCACTGCAGAGGTCGGATCTGAACCTGTTATGGAAGAGGAGAAGGAGTACATCCTGAACAACCAGTCCCCAGACTTTGAGAACTTCTATATTCCTGATTCACCTTTTGCTAGCTCGCCCCTGTCAGAGGACTTTTCGACTACCCAGCGGTAG

Coding sequence (CDS)

ATGGGCTTTGGGGTTGGTTTGGATTATAAAACCAACCCCAAATACAATCAACCCAATCCTTCCCAGTTTCCGCCGCTTCCCAATGCACACTTTGCTCGATGTCTGCTCTCCCTCTCTCTCTTCTGTCGCCTTTTGTTGCCTTCTGTCCGCATTCACTCTTCCTATGCGTTGGTCGAAGCAGGCCATGTGTTGGTCGAAGCAGGTCATGCGTTGGTCGAAGTAGGCCATGCGTCGGTCGAAGCAGGTCATGCGTTGGTCGAAGCAGGCCATGCGTTGGTCGAAAGTCATCCGAGTGCAAAAGAATTGCGCCATATTCCATACTATGATGAATTGGCCATCGTATTCGGCAAAGACAGAGCCACAGGGAGTTATGCAACCACCACTGCAGAGGTCGGATCTGAACCTGTTATGGAAGAGGAGAAGGAGTACATCCTGAACAACCAGTCCCCAGACTTTGAGAACTTCTATATTCCTGATTCACCTTTTGCTAGCTCGCCCCTGTCAGAGGACTTTTCGACTACCCAGCGGTAG

Protein sequence

MGFGVGLDYKTNPKYNQPNPSQFPPLPNAHFARCLLSLSLFCRLLLPSVRIHSSYALVEAGHVLVEAGHALVEVGHASVEAGHALVEAGHALVESHPSAKELRHIPYYDELAIVFGKDRATGSYATTTAEVGSEPVMEEEKEYILNNQSPDFENFYIPDSPFASSPLSEDFSTTQR
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cla005180Cla005180gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cla005180Cla005180.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cla005180.1.cds1Cla005180.1.cds1CDS
Cla005180.1.cds2Cla005180.1.cds2CDS