Cla004914.1 (mRNA) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla004914
Type	mRNA
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Acidic endochitinase (AHRD V1 **-- Q8LP06_ARAKO); contains Interpro domain(s) IPR013781 Glycoside hydrolase, subgroup, catalytic core
Location	Chr1 : 418357 .. 418782 (-)
Sequence length	426

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAAAACAACATATCAATCCCCACAATGTTCCTAACTTTCTTCTTGATTACTACCTTGTCCCAATCTTCTCAAGTGTCAGATTAGAGAGTATTGGAGACAACAAAAAGGAGAAGACAGCATCAAAGATGCATGTAACGCAAAGCATAAATTACAGTACCATCAACATTGCTTTTCTGTCGAAGTTCGGAAGTCGTCTAAAGCCAAAGCTCGACATTCTTTCACATTGCAATCCAAACAATGGCAGGTGCAAAGATCTCGATAACGAGATTAAAGGCTGCCAACACAAAGCGGGTGCCATCGATCAACAGTTAATTGGCGACAACTGCGGCAACAACTACTACAACCCTTCCTCTGCCGATGCAAAACAAGTAGCTGCCTTCTTCGACGGTGTTTCCAAGTCACGACCGTTGGAGATGTTTTAG

mRNA sequence

ATGGCAAAACAACATATCAATCCCCACAATGTTCCTAACTTTCTTCTTGATTACTACCTTGTCCCAATCTTCTCAAGTGTCAGATTAGAGAGTATTGGAGACAACAAAAAGGAGAAGACAGCATCAAAGATGCATGTAACGCAAAGCATAAATTACAGTACCATCAACATTGCTTTTCTGTCGAAGTTCGGAAGTCGTCTAAAGCCAAAGCTCGACATTCTTTCACATTGCAATCCAAACAATGGCAGGTGCAAAGATCTCGATAACGAGATTAAAGGCTGCCAACACAAAGCGGGTGCCATCGATCAACAGTTAATTGGCGACAACTGCGGCAACAACTACTACAACCCTTCCTCTGCCGATGCAAAACAAGTAGCTGCCTTCTTCGACGGTGTTTCCAAGTCACGACCGTTGGAGATGTTTTAG

Coding sequence (CDS)

ATGGCAAAACAACATATCAATCCCCACAATGTTCCTAACTTTCTTCTTGATTACTACCTTGTCCCAATCTTCTCAAGTGTCAGATTAGAGAGTATTGGAGACAACAAAAAGGAGAAGACAGCATCAAAGATGCATGTAACGCAAAGCATAAATTACAGTACCATCAACATTGCTTTTCTGTCGAAGTTCGGAAGTCGTCTAAAGCCAAAGCTCGACATTCTTTCACATTGCAATCCAAACAATGGCAGGTGCAAAGATCTCGATAACGAGATTAAAGGCTGCCAACACAAAGCGGGTGCCATCGATCAACAGTTAATTGGCGACAACTGCGGCAACAACTACTACAACCCTTCCTCTGCCGATGCAAAACAAGTAGCTGCCTTCTTCGACGGTGTTTCCAAGTCACGACCGTTGGAGATGTTTTAG

Protein sequence

MAKQHINPHNVPNFLLDYYLVPIFSSVRLESIGDNKKEKTASKMHVTQSINYSTINIAFLSKFGSRLKPKLDILSHCNPNNGRCKDLDNEIKGCQHKAGAIDQQLIGDNCGNNYYNPSSADAKQVAAFFDGVSKSRPLEMF

Homology

[Close]

BLAST of Cla004914 vs. Swiss-Prot
Match: CHIA_CUCSA (Acidic endochitinase OS=Cucumis sativus PE=1 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 2.4e-10
Identity = 52/141 (36.88%), Postives = 68/141 (48.23%), Query Frame = 1


Query: 9   HNVPNFLLDYYLVP-IFSSVRLESI----GDNKKEKTASKMHVTQSINYSTINIAFLSKF 68
           H +   L  ++L+  IF S     I    G N  E + +    T   NY  +NIAFLS F
Sbjct: 4   HKITTTLSIFFLLSSIFRSSDAAGIAIYWGQNGNEGSLASTCATG--NYEFVNIAFLSSF 63

Query: 69  GSRLKPKLDILSHCNPNNGRCKDLDNEIKGCQHKAGAIDQQLIGDNCGNNYYNPSSA-DA 128
           GS   P L++  HCNP+N  C  L +EI  C+ +   +   L+    G   Y+ SSA DA
Sbjct: 64  GSGQAPVLNLAGHCNPDNNGCAFLSDEINSCKSQNVKV---LLSIGGGAGSYSLSSADDA 123

Query: 129 KQVA-----AFFDGVSKSRPL 139
           KQVA     ++  G S SRPL
Sbjct: 124 KQVANFIWNSYLGGQSDSRPL 139

[Close]

BLAST of Cla004914 vs. Swiss-Prot
Match: CHLY_HEVBR (Hevamine-A OS=Hevea brasiliensis PE=1 SV=2)

HSP 1 Score: 65.1 bits (157), Expect = 7.1e-10
Identity = 44/111 (39.64%), Postives = 57/111 (51.35%), Query Frame = 1


Query: 33  GDNKKEKTASKMHVTQSINYSTINIAFLSKFGSRLKPKLDILSHCNPNNGRCKDLDNEIK 92
           G N  E T ++   T+   YS +NIAFL+KFG+   P++++  HCNP  G C  + N I+
Sbjct: 34  GQNGNEGTLTQTCSTRK--YSYVNIAFLNKFGNGQTPQINLAGHCNPAAGGCTIVSNGIR 93

Query: 93  GCQHKAGAIDQQLIGDNCGNNYYNPSSADAKQVA-----AFFDGVSKSRPL 139
            CQ + G      +G   G +Y   S ADAK VA      F  G S SRPL
Sbjct: 94  SCQIQ-GIKVMLSLGGGIG-SYTLASQADAKNVADYLWNNFLGGKSSSRPL 140

[Close]

BLAST of Cla004914 vs. Swiss-Prot
Match: CHIA_TOBAC (Acidic endochitinase OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 9.3e-10
Identity = 39/111 (35.14%), Postives = 56/111 (50.45%), Query Frame = 1


Query: 33  GDNKKEKTASKMHVTQSINYSTINIAFLSKFGSRLKPKLDILSHCNPNNGRCKDLDNEIK 92
           G N  E + +    T   NY+ +NIAFL  FG+   P L++  HC+PN G C  L N+I+
Sbjct: 30  GQNGNEGSLADTCATN--NYAIVNIAFLVVFGNGQNPVLNLAGHCDPNAGACTGLSNDIR 89

Query: 93  GCQHKAGAIDQQLIGDNCGNNYYNPSSADAKQVA-----AFFDGVSKSRPL 139
            CQ++   +   L G     +Y+  S+ DA+ VA      +  G S +RPL
Sbjct: 90  ACQNQGIKVMLSLGGG--AGSYFLSSADDARNVANYLWNNYLGGQSNTRPL 136

[Close]

BLAST of Cla004914 vs. Swiss-Prot
Match: CHIT3_VITVI (Acidic endochitinase OS=Vitis vinifera GN=CHIT3 PE=2 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.7e-09
Identity = 44/114 (38.60%), Postives = 58/114 (50.88%), Query Frame = 1


Query: 33  GDNKKEKTASKMHVTQSIN---YSTINIAFLSKFGSRLKPKLDILSHCNPNNGRCKDLDN 92
           G N  E T     +TQ+ N   YS +NIAFL+KFG+   P++++  HCNP +  C  +  
Sbjct: 33  GQNGNEGT-----LTQTCNTGKYSYVNIAFLNKFGNGQTPEINLAGHCNPASNGCTSVST 92

Query: 93  EIKGCQHKAGAIDQQLIGDNCGNNYYNPSSADAKQVA-----AFFDGVSKSRPL 139
            I+ CQ++ G      IG   G +Y   SS DA+ VA      F  G S SRPL
Sbjct: 93  GIRNCQNR-GIKVMLSIGGGAG-SYSLSSSNDAQNVANYLWNNFLGGQSSSRPL 139

[Close]

BLAST of Cla004914 vs. Swiss-Prot
Match: CHIB_TOBAC (Basic endochitinase OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 3.0e-08
Identity = 47/139 (33.81%), Postives = 65/139 (46.76%), Query Frame = 1


Query: 14  FLLDYYLVPIFSSVRL--------ESIGDNKKEKTASKMHVTQSINYSTINIAFLSKFGS 73
           F+L  +L+ + S V+         + +G+ K   T +      S  Y+ +NIAFLS FG+
Sbjct: 9   FILPIFLLLLTSKVKAGDIVVYWGQDVGEGKLIDTCN------SGLYNIVNIAFLSSFGN 68

Query: 74  RLKPKLDILSHCNPNNGRCKDLDNEIKGCQHKAGAIDQQLIGDNCGNNYYNPSSA-DAKQ 133
              PKL++  HC P++G C+ L   I+ CQ     I   + G   G   Y  SS  DA+Q
Sbjct: 69  FQTPKLNLAGHCEPSSGGCQQLTKSIRHCQSIGIKIMLSIGG---GTPTYTLSSVDDARQ 128

Query: 134 VA-----AFFDGVSKSRPL 139
           VA      F  G S  RPL
Sbjct: 129 VADYLWNNFLGGQSSFRPL 138

[Close]

BLAST of Cla004914 vs. TrEMBL
Match: A0A0D2PAE8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G116500 PE=3 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.0e-10
Identity = 49/108 (45.37%), Postives = 61/108 (56.48%), Query Frame = 1


Query: 39  KTASKMHVTQSIN---YSTINIAFLSKFGSRLKPKLDILSHCNPNNGRCKDLDNEIKGCQ 98
           ++ S+  + Q+ N   Y  +NIAFL+KFGSR  P L++  HCNP NG C+   +EIK CQ
Sbjct: 36  QSGSETTLNQTCNTGRYKYVNIAFLNKFGSRRTPGLNLAGHCNPANGGCRVASSEIKHCQ 95

Query: 99  HKAGAIDQQLIGDNCGNNYYNPSSADAKQVAA-----FFDGVSKSRPL 139
            K G      IG   G  Y   S ADAK+VAA     F  G S SRPL
Sbjct: 96  SK-GIKVMLSIGGGIG-QYSLASKADAKRVAAYLYNNFLGGRSASRPL 141

[Close]

BLAST of Cla004914 vs. TrEMBL
Match: M0ZGC2_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400000074 PE=3 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.7e-10
Identity = 46/111 (41.44%), Postives = 60/111 (54.05%), Query Frame = 1


Query: 33  GDNKKEKTASKMHVTQSINYSTINIAFLSKFGSRLKPKLDILSHCNPNNGRCKDLDNEIK 92
           G N  E T ++   T+  NY  +NIAFL  FG+  +P +D+  HCNPN G C  L  +IK
Sbjct: 33  GQNGGEGTLAETCATK--NYDLVNIAFLPTFGNGQQPMIDLSGHCNPNVGECTKLSTDIK 92

Query: 93  GCQHKAGAIDQQLIGDNCGNNYYNPSSADAKQVAA-----FFDGVSKSRPL 139
            CQ K G      IG   G +YY  S+ DA++VA      F  G S +RPL
Sbjct: 93  SCQAK-GIKVMLSIGGGAG-SYYLASADDAREVATYLWNNFLGGQSTTRPL 139

[Close]

BLAST of Cla004914 vs. TrEMBL
Match: A0A067L7G6_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20076 PE=3 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.2e-10
Identity = 47/111 (42.34%), Postives = 60/111 (54.05%), Query Frame = 1


Query: 33  GDNKKEKTASKMHVTQSINYSTINIAFLSKFGSRLKPKLDILSHCNPNNGRCKDLDNEIK 92
           G N  E T ++   T   NY  +NIAFL  FG+   P++D+  HC+P +  C  L ++IK
Sbjct: 31  GQNGNEGTLAETCATG--NYDFVNIAFLPTFGNGQTPRIDLSGHCDPYSNGCTGLSSDIK 90

Query: 93  GCQHKAGAIDQQLIGDNCGNNYYNPSSADAKQVAA-----FFDGVSKSRPL 139
            CQ K G      IG   G +YY  S+ DAKQVAA     F  G S SRPL
Sbjct: 91  SCQAK-GIKVMLSIGGGAG-SYYLASTQDAKQVAAYLWNNFLGGYSSSRPL 137

[Close]

BLAST of Cla004914 vs. TrEMBL
Match: K4AZR4_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=3 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 3.8e-10
Identity = 45/111 (40.54%), Postives = 60/111 (54.05%), Query Frame = 1


Query: 33  GDNKKEKTASKMHVTQSINYSTINIAFLSKFGSRLKPKLDILSHCNPNNGRCKDLDNEIK 92
           G N  E T ++   T+  NY  +NIAFL  FG+  +P +D+  HCNPN G C  L  +IK
Sbjct: 33  GQNGGEGTLAETCATK--NYDFVNIAFLPTFGNGQQPMIDLSGHCNPNVGECTKLSTDIK 92

Query: 93  GCQHKAGAIDQQLIGDNCGNNYYNPSSADAKQVAA-----FFDGVSKSRPL 139
            CQ K   +    IG   G +YY  S+ DA++VA      F  G S +RPL
Sbjct: 93  SCQAKGIKVILS-IGGGAG-SYYLASADDAREVATYLWNNFLGGQSTTRPL 139

[Close]

BLAST of Cla004914 vs. TrEMBL
Match: W5BSZ7_WHEAT (Uncharacterized protein OS=Triticum aestivum PE=3 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 5.0e-10
Identity = 48/111 (43.24%), Postives = 55/111 (49.55%), Query Frame = 1


Query: 33  GDNKKEKTASKMHVTQSINYSTINIAFLSKFGSRLKPKLDILSHCNPNNGRCKDLDNEIK 92
           G N  E T +    T   NY  +NIAFLS FG+   P L++  HC P NG C  L ++IK
Sbjct: 33  GQNGGEGTLAATCATG--NYKFVNIAFLSSFGNGQPPVLNLAGHCVPTNGGCASLSSDIK 92

Query: 93  GCQHKAGAIDQQLIGDNCGNNYYNPSSADAKQVAA-----FFDGVSKSRPL 139
            CQ   G      IG   G  YY  SS DAK VA      F  G S SRPL
Sbjct: 93  SCQSN-GVKVMLSIGGGAG-GYYLSSSQDAKNVATYLWNNFLGGTSSSRPL 139

[Close]

BLAST of Cla004914 vs. NCBI nr
Match: gi|823155993|ref|XP_012477936.1| (PREDICTED: hevamine-A-like [Gossypium raimondii])

HSP 1 Score: 74.7 bits (182), Expect = 1.4e-10
Identity = 49/108 (45.37%), Postives = 61/108 (56.48%), Query Frame = 1


Query: 39  KTASKMHVTQSIN---YSTINIAFLSKFGSRLKPKLDILSHCNPNNGRCKDLDNEIKGCQ 98
           ++ S+  + Q+ N   Y  +NIAFL+KFGSR  P L++  HCNP NG C+   +EIK CQ
Sbjct: 36  QSGSETTLNQTCNTGRYKYVNIAFLNKFGSRRTPGLNLAGHCNPANGGCRVASSEIKHCQ 95

Query: 99  HKAGAIDQQLIGDNCGNNYYNPSSADAKQVAA-----FFDGVSKSRPL 139
            K G      IG   G  Y   S ADAK+VAA     F  G S SRPL
Sbjct: 96  SK-GIKVMLSIGGGIG-QYSLASKADAKRVAAYLYNNFLGGRSASRPL 141

[Close]

BLAST of Cla004914 vs. NCBI nr
Match: gi|565345119|ref|XP_006339646.1| (PREDICTED: acidic endochitinase-like [Solanum tuberosum])

HSP 1 Score: 73.9 bits (180), Expect = 2.4e-10
Identity = 46/111 (41.44%), Postives = 60/111 (54.05%), Query Frame = 1


Query: 33  GDNKKEKTASKMHVTQSINYSTINIAFLSKFGSRLKPKLDILSHCNPNNGRCKDLDNEIK 92
           G N  E T ++   T+  NY  +NIAFL  FG+  +P +D+  HCNPN G C  L  +IK
Sbjct: 33  GQNGGEGTLAETCATK--NYDLVNIAFLPTFGNGQQPMIDLSGHCNPNVGECTKLSTDIK 92

Query: 93  GCQHKAGAIDQQLIGDNCGNNYYNPSSADAKQVAA-----FFDGVSKSRPL 139
            CQ K G      IG   G +YY  S+ DA++VA      F  G S +RPL
Sbjct: 93  SCQAK-GIKVMLSIGGGAG-SYYLASADDAREVATYLWNNFLGGQSTTRPL 139

[Close]

BLAST of Cla004914 vs. NCBI nr
Match: gi|970000123|ref|XP_015086563.1| (PREDICTED: LOW QUALITY PROTEIN: endochitinase 2-like [Solanum pennellii])

HSP 1 Score: 73.6 bits (179), Expect = 3.2e-10
Identity = 46/111 (41.44%), Postives = 60/111 (54.05%), Query Frame = 1


Query: 33  GDNKKEKTASKMHVTQSINYSTINIAFLSKFGSRLKPKLDILSHCNPNNGRCKDLDNEIK 92
           G N  E T ++   T+  NY  +NIAFL  FG+  +P +D+  HCNPN G C  L  +IK
Sbjct: 33  GQNGGEGTLAETCATK--NYDFVNIAFLPTFGNGQQPMIDLSGHCNPNVGECTKLSTDIK 92

Query: 93  GCQHKAGAIDQQLIGDNCGNNYYNPSSADAKQVAA-----FFDGVSKSRPL 139
            CQ K G      IG   G +YY  S+ DA++VA      F  G S +RPL
Sbjct: 93  SCQAK-GIKVMLSIGGGAG-SYYLASADDAREVATYLWNNFLGGQSTTRPL 139

[Close]

BLAST of Cla004914 vs. NCBI nr
Match: gi|970000123|ref|XP_015086563.1| (PREDICTED: LOW QUALITY PROTEIN: endochitinase 2-like [Solanum pennellii])

HSP 1 Score: 72.8 bits (177), Expect = 5.4e-10
Identity = 45/111 (40.54%), Postives = 60/111 (54.05%), Query Frame = 1


Query: 33  GDNKKEKTASKMHVTQSINYSTINIAFLSKFGSRLKPKLDILSHCNPNNGRCKDLDNEIK 92
           G N  E T ++   T+  NY  +NIAFL  FG+  +P +D+  HCNPN G C  L  +IK
Sbjct: 336 GQNGGEGTLAETCATK--NYDFVNIAFLPTFGNGQQPMIDLSGHCNPNVGECTKLSTDIK 395

Query: 93  GCQHKAGAIDQQLIGDNCGNNYYNPSSADAKQVAA-----FFDGVSKSRPL 139
            CQ K   +    IG   G +YY  S+ DA++VA      F  G S +RPL
Sbjct: 396 SCQAKGIKVILS-IGGGAG-SYYLSSADDAREVATYLWNNFLGGQSTTRPL 442

HSP 2 Score: 73.6 bits (179), Expect = 3.2e-10
Identity = 47/111 (42.34%), Postives = 60/111 (54.05%), Query Frame = 1


Query: 33  GDNKKEKTASKMHVTQSINYSTINIAFLSKFGSRLKPKLDILSHCNPNNGRCKDLDNEIK 92
           G N  E T ++   T   NY  +NIAFL  FG+   P++D+  HC+P +  C  L ++IK
Sbjct: 31  GQNGNEGTLAETCATG--NYDFVNIAFLPTFGNGQTPRIDLSGHCDPYSNGCTGLSSDIK 90

Query: 93  GCQHKAGAIDQQLIGDNCGNNYYNPSSADAKQVAA-----FFDGVSKSRPL 139
            CQ K G      IG   G +YY  S+ DAKQVAA     F  G S SRPL
Sbjct: 91  SCQAK-GIKVMLSIGGGAG-SYYLASTQDAKQVAAYLWNNFLGGYSSSRPL 137

[Close]

BLAST of Cla004914 vs. NCBI nr
Match: gi|723661360|ref|XP_004231197.2| (PREDICTED: chitinase 1-like [Solanum lycopersicum])

HSP 1 Score: 72.8 bits (177), Expect = 5.4e-10
Identity = 45/111 (40.54%), Postives = 60/111 (54.05%), Query Frame = 1


Query: 33  GDNKKEKTASKMHVTQSINYSTINIAFLSKFGSRLKPKLDILSHCNPNNGRCKDLDNEIK 92
           G N  E T ++   T+  NY  +NIAFL  FG+  +P +D+  HCNPN G C  L  +IK
Sbjct: 33  GQNGGEGTLAETCATK--NYDFVNIAFLPTFGNGQQPMIDLSGHCNPNVGECTKLSTDIK 92

Query: 93  GCQHKAGAIDQQLIGDNCGNNYYNPSSADAKQVAA-----FFDGVSKSRPL 139
            CQ K   +    IG   G +YY  S+ DA++VA      F  G S +RPL
Sbjct: 93  SCQAKGIKVILS-IGGGAG-SYYLASADDAREVATYLWNNFLGGQSTTRPL 139

The following BLAST results are available for this feature:

BLAST of Cla004914 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CHIA_CUCSA	2.4e-10	36.88	Acidic endochitinase OS=Cucumis sativus PE=1 SV=1	[more]
CHLY_HEVBR	7.1e-10	39.64	Hevamine-A OS=Hevea brasiliensis PE=1 SV=2	[more]
CHIA_TOBAC	9.3e-10	35.14	Acidic endochitinase OS=Nicotiana tabacum PE=1 SV=1	[more]
CHIT3_VITVI	2.7e-09	38.60	Acidic endochitinase OS=Vitis vinifera GN=CHIT3 PE=2 SV=1	[more]
CHIB_TOBAC	3.0e-08	33.81	Basic endochitinase OS=Nicotiana tabacum PE=2 SV=1	[more]

BLAST of Cla004914 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0D2PAE8_GOSRA	1.0e-10	45.37	Uncharacterized protein OS=Gossypium raimondii GN=B456_004G116500 PE=3 SV=1	[more]
M0ZGC2_SOLTU	1.7e-10	41.44	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400000074 PE=3 SV=1	[more]
A0A067L7G6_JATCU	2.2e-10	42.34	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20076 PE=3 SV=1	[more]
K4AZR4_SOLLC	3.8e-10	40.54	Uncharacterized protein OS=Solanum lycopersicum PE=3 SV=1	[more]
W5BSZ7_WHEAT	5.0e-10	43.24	Uncharacterized protein OS=Triticum aestivum PE=3 SV=1	[more]

BLAST of Cla004914 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|823155993\|ref\|XP_012477936.1\|	1.4e-10	45.37	PREDICTED: hevamine-A-like [Gossypium raimondii]	[more]
gi\|565345119\|ref\|XP_006339646.1\|	2.4e-10	41.44	PREDICTED: acidic endochitinase-like [Solanum tuberosum]	[more]
gi\|970000123\|ref\|XP_015086563.1\|	3.2e-10	41.44	PREDICTED: LOW QUALITY PROTEIN: endochitinase 2-like [Solanum pennellii]	[more]
gi\|970000123\|ref\|XP_015086563.1\|	5.4e-10	40.54	PREDICTED: LOW QUALITY PROTEIN: endochitinase 2-like [Solanum pennellii]	[more]
gi\|723661360\|ref\|XP_004231197.2\|	5.4e-10	40.54	PREDICTED: chitinase 1-like [Solanum lycopersicum]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR013781	Glycoside hydrolase, catalytic domain
IPR017853	Glycoside_hydrolase_SF

Vocabulary: **Biological Process**
Term	Definition
GO:0005975	carbohydrate metabolic process

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0005975	carbohydrate metabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cla004914	Cla004914	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cla004914	Cla004914.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cla004914.1.cds1	Cla004914.1.cds1	CDS

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013781	Glycoside hydrolase, catalytic domain	GENE3D	G3DSA:3.20.20.80		coord: 35..129 score: 3.1
IPR017853	Glycoside hydrolase superfamily	unknown	SSF51445	(Trans)glycosidases	coord: 35..131 score: 2.