Cla004478.1 (mRNA) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla004478
Type	mRNA
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Nuclear transcription factor Y subunit B-6 (AHRD V1 ***- B6UH02_MAIZE); contains Interpro domain(s) IPR003957 Transcription factor, CBFA/NFYB, DNA topoisomerase
Location	Chr10 : 4324746 .. 4325372 (-)
Sequence length	627

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGCTGACCCCAAACAAGCCAACCTCCGCCAACAACACTCCGAACAGCAACCACCACCTCTCCAACGGTGGAGCCGCCACTGGCAACTCCCCAGCAACCAGCCCCGTCCCAGTGGCGACTGCAAACAATGAGCAAAGCCAACAATGTGTGGTGCGAGAGCAAGACCAATACATGCCGATTGCTAATGTGATACGCATCATGCGGCGGATCTTGCCCTCCCATGCAAAGATATCAGACGACGCCAAAGAGACTATCCAAGAATGTGTGTCGGAGTACATCAGCTTCATAACTGGCGAGGCGAACGAGCGTTGCCAACGAGAGCAGCGCAAGACGGTAACAGCAGAGGATGTCCTTTGGGCTATGGGGAAGCTAGGTTTTGACGACTACATCGAACCGCTAACTGTTTTCCTCAACCGCTATCGTGAGTCGGAGAGTGACCGAATTCGCACTGAGCCGATTTTGAGGCGCAATGTGGATTACGGGCCACAAGTGGGGATGATGCCACCGTACGGGCAGGCATTTCAAATAGGGCACGTCCCAGCGGGGATGTTCGATGCAATGGGCGGATACTATGGCGGAGGCGGGAGCGGGGGGCCGAGCGCGGGGAATGGTAGCCAGCTTTGA

mRNA sequence

ATGTTGCTGACCCCAAACAAGCCAACCTCCGCCAACAACACTCCGAACAGCAACCACCACCTCTCCAACGGTGGAGCCGCCACTGGCAACTCCCCAGCAACCAGCCCCGTCCCAGTGGCGACTGCAAACAATGAGCAAAGCCAACAATGTGTGGTGCGAGAGCAAGACCAATACATGCCGATTGCTAATGTGATACGCATCATGCGGCGGATCTTGCCCTCCCATGCAAAGATATCAGACGACGCCAAAGAGACTATCCAAGAATGTGTGTCGGAGTACATCAGCTTCATAACTGGCGAGGCGAACGAGCGTTGCCAACGAGAGCAGCGCAAGACGGTAACAGCAGAGGATGTCCTTTGGGCTATGGGGAAGCTAGGTTTTGACGACTACATCGAACCGCTAACTGTTTTCCTCAACCGCTATCGTGAGTCGGAGAGTGACCGAATTCGCACTGAGCCGATTTTGAGGCGCAATGTGGATTACGGGCCACAAGTGGGGATGATGCCACCGTACGGGCAGGCATTTCAAATAGGGCACGTCCCAGCGGGGATGTTCGATGCAATGGGCGGATACTATGGCGGAGGCGGGAGCGGGGGGCCGAGCGCGGGGAATGGTAGCCAGCTTTGA

Coding sequence (CDS)

ATGTTGCTGACCCCAAACAAGCCAACCTCCGCCAACAACACTCCGAACAGCAACCACCACCTCTCCAACGGTGGAGCCGCCACTGGCAACTCCCCAGCAACCAGCCCCGTCCCAGTGGCGACTGCAAACAATGAGCAAAGCCAACAATGTGTGGTGCGAGAGCAAGACCAATACATGCCGATTGCTAATGTGATACGCATCATGCGGCGGATCTTGCCCTCCCATGCAAAGATATCAGACGACGCCAAAGAGACTATCCAAGAATGTGTGTCGGAGTACATCAGCTTCATAACTGGCGAGGCGAACGAGCGTTGCCAACGAGAGCAGCGCAAGACGGTAACAGCAGAGGATGTCCTTTGGGCTATGGGGAAGCTAGGTTTTGACGACTACATCGAACCGCTAACTGTTTTCCTCAACCGCTATCGTGAGTCGGAGAGTGACCGAATTCGCACTGAGCCGATTTTGAGGCGCAATGTGGATTACGGGCCACAAGTGGGGATGATGCCACCGTACGGGCAGGCATTTCAAATAGGGCACGTCCCAGCGGGGATGTTCGATGCAATGGGCGGATACTATGGCGGAGGCGGGAGCGGGGGGCCGAGCGCGGGGAATGGTAGCCAGCTTTGA

Protein sequence

MLLTPNKPTSANNTPNSNHHLSNGGAATGNSPATSPVPVATANNEQSQQCVVREQDQYMPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLTVFLNRYRESESDRIRTEPILRRNVDYGPQVGMMPPYGQAFQIGHVPAGMFDAMGGYYGGGGSGGPSAGNGSQL

Homology

[Close]

BLAST of Cla004478 vs. Swiss-Prot
Match: NFYB9_ARATH (Nuclear transcription factor Y subunit B-9 OS=Arabidopsis thaliana GN=NFYB9 PE=1 SV=2)

HSP 1 Score: 207.6 bits (527), Expect = 1.3e-52
Identity = 120/218 (55.05%), Postives = 137/218 (62.84%), Query Frame = 1


Query: 8   PTSANNTPNSNHHLSNGGAATGNSPATSPVPVATANN-------EQSQQCVVREQDQYMP 67
           P S    P S   L+    +   +P TS V VA A +       +Q   CV REQDQYMP
Sbjct: 6   PFSHYQLPKSISELNLDQHSNNPTPMTSSVVVAGAGDKNNGIVVQQQPPCVAREQDQYMP 65

Query: 68  IANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDVLW 127
           IANVIRIMR+ LPSHAKISDDAKETIQECVSEYISF+TGEANERCQREQRKT+TAED+LW
Sbjct: 66  IANVIRIMRKTLPSHAKISDDAKETIQECVSEYISFVTGEANERCQREQRKTITAEDILW 125

Query: 128 AMGKLGFDDYIEPLTVFLNRYRESESDR---IRTEPILRRNV-------DYGPQVGMMPP 187
           AM KLGFD+Y++PLTVF+NRYRE E+DR   +R EP   R          +GP  G+ PP
Sbjct: 126 AMSKLGFDNYVDPLTVFINRYREIETDRGSALRGEPPSLRQTYGGNGIGFHGPSHGLPPP 185

Query: 188 YGQAFQIGHVPAGMFDAMGGYYGGGGSG--GPSAGNGS 207
               +  G +   M    G YY  G SG    S G GS
Sbjct: 186 --GPYGYGMLDQSMVMGGGRYYQNGSSGQDESSVGGGS 221

[Close]

BLAST of Cla004478 vs. Swiss-Prot
Match: NFYB6_ARATH (Nuclear transcription factor Y subunit B-6 OS=Arabidopsis thaliana GN=NFYB6 PE=1 SV=2)

HSP 1 Score: 187.6 bits (475), Expect = 1.4e-46
Identity = 96/138 (69.57%), Postives = 110/138 (79.71%), Query Frame = 1


Query: 12  NNTPNSNHHLSNGGAATGNS-PATSPVPVATANNEQSQQCVVREQDQYMPIANVIRIMRR 71
           N TP+     +N   A G+  P     P  T+N  + ++C VREQD++MPIANVIRIMRR
Sbjct: 16  NTTPSPPGLAANFLMAEGSMRPPEFNQPNKTSNGGE-EECTVREQDRFMPIANVIRIMRR 75

Query: 72  ILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDVLWAMGKLGFDDY 131
           ILP+HAKISDD+KETIQECVSEYISFITGEANERCQREQRKT+TAEDVLWAM KLGFDDY
Sbjct: 76  ILPAHAKISDDSKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSKLGFDDY 135

Query: 132 IEPLTVFLNRYRESESDR 149
           IEPLT++L+RYRE E +R
Sbjct: 136 IEPLTLYLHRYRELEGER 152

[Close]

BLAST of Cla004478 vs. Swiss-Prot
Match: NFYB2_ARATH (Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana GN=NFYB2 PE=2 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 4.2e-35
Identity = 81/158 (51.27%), Postives = 106/158 (67.09%), Query Frame = 1


Query: 43  NNEQSQQCVV-REQDQYMPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEA 102
           NN+  Q  +  REQD+++PIANV RIM++ LP++AKIS DAKET+QECVSE+ISF+TGEA
Sbjct: 15  NNQNGQSSLSPREQDRFLPIANVSRIMKKALPANAKISKDAKETMQECVSEFISFVTGEA 74

Query: 103 NERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLTVFLNRYRESESDRIRTEPILRRNVDY 162
           +++CQ+E+RKT+  +D+LWAM  LGF+DY+EPL V+L R+RE E +R      L R    
Sbjct: 75  SDKCQKEKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFREIEGERTG----LGR---- 134

Query: 163 GPQVGMMPPYGQAFQIGHVPAGMFDAM---GGYYGGGG 197
            PQ G           G V     DA+   GG+YGGGG
Sbjct: 135 -PQTG-----------GEVGEHQRDAVGDGGGFYGGGG 152

[Close]

BLAST of Cla004478 vs. Swiss-Prot
Match: NFYB3_ARATH (Nuclear transcription factor Y subunit B-3 OS=Arabidopsis thaliana GN=NFYB3 PE=2 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 1.0e-33
Identity = 64/99 (64.65%), Postives = 85/99 (85.86%), Query Frame = 1


Query: 53  REQDQYMPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKT 112
           REQD+++PIANV RIM++ LP++AKIS DAKET+QECVSE+ISFITGEA+++CQRE+RKT
Sbjct: 20  REQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKT 79

Query: 113 VTAEDVLWAMGKLGFDDYIEPLTVFLNRYRESESDRIRT 152
           +  +D+LWAM  LGF+DY+EPL V+L +YRE E ++  T
Sbjct: 80  INGDDLLWAMTTLGFEDYVEPLKVYLQKYREVEGEKTTT 118

[Close]

BLAST of Cla004478 vs. Swiss-Prot
Match: NFYB3_ORYSJ (Nuclear transcription factor Y subunit B-3 OS=Oryza sativa subsp. japonica GN=NFYB3 PE=1 SV=2)

HSP 1 Score: 141.4 bits (355), Expect = 1.2e-32
Identity = 61/96 (63.54%), Postives = 82/96 (85.42%), Query Frame = 1


Query: 52  VREQDQYMPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRK 111
           VREQD+++PIAN+ RIM++ +P++ KI+ DAKET+QECVSE+ISFIT EA+++CQRE+RK
Sbjct: 36  VREQDRFLPIANISRIMKKAIPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRK 95

Query: 112 TVTAEDVLWAMGKLGFDDYIEPLTVFLNRYRESESD 148
           T+  +D+LWAM  LGF+DYIEPL V+L +YRE E D
Sbjct: 96  TINGDDLLWAMATLGFEDYIEPLKVYLQKYREMEGD 131

[Close]

BLAST of Cla004478 vs. TrEMBL
Match: A0A0A0L2U1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G049440 PE=4 SV=1)

HSP 1 Score: 360.9 bits (925), Expect = 1.0e-96
Identity = 178/209 (85.17%), Postives = 189/209 (90.43%), Query Frame = 1


Query: 2   LLTPNKPTSANNTPNSNHHLSNGGAATGNSPATSPVPVATA--NNEQSQQCVVREQDQYM 61
           +LTPN PTS N+ PN+N HLSNGG + GNS ATSP+ VA    NNEQ+QQC+VREQDQYM
Sbjct: 33  MLTPNNPTSINSNPNTNQHLSNGGTSIGNSSATSPLSVAATANNNEQNQQCLVREQDQYM 92

Query: 62  PIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDVL 121
           P+ANVIRIM+RILPSHAKISDD KETIQECVSEYISFIT EANERCQREQRKTVTAEDVL
Sbjct: 93  PMANVIRIMKRILPSHAKISDDTKETIQECVSEYISFITSEANERCQREQRKTVTAEDVL 152

Query: 122 WAMGKLGFDDYIEPLTVFLNRYRESESDRIRTEPILRRNVDYGPQVGMMPPYGQAFQIGH 181
           WAMGKLGFDDYIEPLTVFLNRYRESES  IRTEP+LRRNVDYG QVGM+ PYGQAFQIG 
Sbjct: 153 WAMGKLGFDDYIEPLTVFLNRYRESES--IRTEPMLRRNVDYGAQVGMISPYGQAFQIGQ 212

Query: 182 VPAGMFDAMGGYYGGGGSGGPSAGNGSQL 209
           VPAGMFDAMGGYYGGGGSGGPSAGN SQL
Sbjct: 213 VPAGMFDAMGGYYGGGGSGGPSAGNNSQL 239

[Close]

BLAST of Cla004478 vs. TrEMBL
Match: A0A0A0L4W1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G055940 PE=4 SV=1)

HSP 1 Score: 295.4 bits (755), Expect = 5.3e-77
Identity = 151/210 (71.90%), Postives = 162/210 (77.14%), Query Frame = 1


Query: 1   MLLTPNKPTSANNTPNSNHHLSNGGAATGNSPATSPVPVATA--NNEQSQQCVVREQDQY 60
           M+LTPN P S NN PN+NHHLS+GG + GNS ATSP+ VA    NNEQ+QQC+VREQDQY
Sbjct: 43  MMLTPNNPNSINNNPNTNHHLSDGGTSIGNSSATSPLSVAATANNNEQNQQCLVREQDQY 102

Query: 61  MPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDV 120
           MP+AN                             YISFIT EANERCQREQRKTVTAEDV
Sbjct: 103 MPMAN-----------------------------YISFITSEANERCQREQRKTVTAEDV 162

Query: 121 LWAMGKLGFDDYIEPLTVFLNRYRESESDRIRTEPILRRNVDYGPQVGMMPPYGQAFQIG 180
           LWAMGKLGFD+YIEPLTVFLNRYRESES  IRTEP+LRRNVDYGPQVGM+ PYGQAFQIG
Sbjct: 163 LWAMGKLGFDNYIEPLTVFLNRYRESES--IRTEPMLRRNVDYGPQVGMISPYGQAFQIG 221

Query: 181 HVPAGMFDAMGGYYGGGGSGGPSAGNGSQL 209
           HVPAGMFDAMGGYYGGGGS GPS GN SQL
Sbjct: 223 HVPAGMFDAMGGYYGGGGSCGPSTGNNSQL 221

[Close]

BLAST of Cla004478 vs. TrEMBL
Match: A0A0B0PGM2_GOSAR (Nuclear transcription factor Y subunit B-9-like protein OS=Gossypium arboreum GN=F383_03265 PE=4 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 7.9e-65
Identity = 132/201 (65.67%), Postives = 157/201 (78.11%), Query Frame = 1


Query: 10  SANNTPNSNHHLSNGGAATGNSPATSPVPVATANNEQSQQCVVREQDQYMPIANVIRIMR 69
           S+N+  N+N  ++N  A  GN+  ++ +P           C+VREQDQYMPIANVIRIMR
Sbjct: 27  SSNSNTNTNTIINNNAANNGNAANSNTMP---------PPCMVREQDQYMPIANVIRIMR 86

Query: 70  RILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDVLWAMGKLGFDD 129
           RILP+HAKISDDAKETIQECVSEYISFITGEANERCQREQRKT+TAEDVLWAMGKLGFDD
Sbjct: 87  RILPTHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMGKLGFDD 146

Query: 130 YIEPLTVFLNRYRESESDR--IRTEPILRRNVDYGPQVGMMPPYGQAFQIGHVPAGMFD- 189
           Y+EPLTVFLNRYRE+E++R  +R+EP+L+R +DYGP + MM PYG  F +GH   G+FD 
Sbjct: 147 YVEPLTVFLNRYRENENERTSLRSEPMLKRGIDYGPSM-MMAPYGAGFHVGH-QQGIFDG 206

Query: 190 --AMGGYY---GGGGSGGPSA 203
             AMGGY      GG GGPS+
Sbjct: 207 ATAMGGYMRDGSSGGGGGPSS 216

[Close]

BLAST of Cla004478 vs. TrEMBL
Match: A0A061FC04_THECC (Ccaat-binding transcription factor subunit A, putative OS=Theobroma cacao GN=TCM_030636 PE=4 SV=1)

HSP 1 Score: 247.3 bits (630), Expect = 1.7e-62
Identity = 131/200 (65.50%), Postives = 150/200 (75.00%), Query Frame = 1


Query: 19  HHLSNGGAAT---GNSPATSPVPVATANNEQSQQCVVREQDQYMPIANVIRIMRRILPSH 78
           H  S+ G +    G+S  T+       +N     C+VREQDQYMPIANVIRIMRRILP+H
Sbjct: 13  HAKSSSGLSVIQPGDSSNTNNGRNTANSNTMPPPCMVREQDQYMPIANVIRIMRRILPAH 72

Query: 79  AKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLT 138
           AKISDDAKETIQECVSEYISFITGEANERCQREQRKT+TAEDVLWAMGKLGFDDY+EPLT
Sbjct: 73  AKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMGKLGFDDYVEPLT 132

Query: 139 VFLNRYRESESDR--IRTEPILRRNVDYGPQVGMMPPYGQAFQIGHVPAGMFD------A 198
           VFL RYRESES+R  +R EPIL+R +DYGP + M PPYG  F +GH   G+FD      A
Sbjct: 133 VFLGRYRESESERTSLRGEPILKRGIDYGPMM-MAPPYGPGFHMGHHHQGIFDAAAAAAA 192

Query: 199 MGGYY-GGGGSGGPSAGNGS 207
           MGG+Y  G G+ G S+   S
Sbjct: 193 MGGFYRDGSGAAGSSSSQAS 211

[Close]

BLAST of Cla004478 vs. TrEMBL
Match: A0A0D2SEP9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G152500 PE=4 SV=1)

HSP 1 Score: 246.5 bits (628), Expect = 2.8e-62
Identity = 125/171 (73.10%), Postives = 142/171 (83.04%), Query Frame = 1


Query: 40  ATANNEQSQQCVVREQDQYMPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITG 99
           A  +N     C+VREQDQYMPIANVIRIMRRILP+HAKISDDAKETIQECVSEYISFITG
Sbjct: 40  AANSNTMPPPCMVREQDQYMPIANVIRIMRRILPTHAKISDDAKETIQECVSEYISFITG 99

Query: 100 EANERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLTVFLNRYRESESDR--IRTEPILRR 159
           EANERCQREQRKT+TAEDVLWAMGKLGFDDY+EPLTVFLNRYRE+E++R  +R+EP+L+R
Sbjct: 100 EANERCQREQRKTITAEDVLWAMGKLGFDDYVEPLTVFLNRYRENENERTSLRSEPMLKR 159

Query: 160 NVDYGPQVGMMPPYGQAFQIGHVPAGMFD---AMGGYY---GGGGSGGPSA 203
            +DYGP + MM PYG  F +GH   G+FD   AMGGY      GG GGPS+
Sbjct: 160 GIDYGPSM-MMAPYGAGFHVGH-QQGIFDGATAMGGYMRDGSSGGGGGPSS 208

[Close]

BLAST of Cla004478 vs. NCBI nr
Match: gi|659096616|ref|XP_008449191.1| (PREDICTED: nuclear transcription factor Y subunit B-9 [Cucumis melo])

HSP 1 Score: 396.7 bits (1018), Expect = 2.4e-107
Identity = 194/210 (92.38%), Postives = 199/210 (94.76%), Query Frame = 1


Query: 1   MLLTPNKPTSANNTPNSNHHLSNGGAATGNSPATSPVPVATA--NNEQSQQCVVREQDQY 60
           M++TPNK TS NNTPNSNHHLSNGG ATGNS ATSP+ VA    NNEQ+QQCVVREQDQY
Sbjct: 1   MMVTPNKATSINNTPNSNHHLSNGGTATGNSSATSPLSVAATANNNEQNQQCVVREQDQY 60

Query: 61  MPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDV 120
           MPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDV
Sbjct: 61  MPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDV 120

Query: 121 LWAMGKLGFDDYIEPLTVFLNRYRESESDRIRTEPILRRNVDYGPQVGMMPPYGQAFQIG 180
           LWAMGKLGFDDYIEPLTVFLNRYRESESDRIRTEPILRRNVDYGPQVGM+ PYGQAFQIG
Sbjct: 121 LWAMGKLGFDDYIEPLTVFLNRYRESESDRIRTEPILRRNVDYGPQVGMISPYGQAFQIG 180

Query: 181 HVPAGMFDAMGGYYGGGGSGGPSAGNGSQL 209
           HVPAGMFDAMGGYYGGGG GGPSAGNGSQL
Sbjct: 181 HVPAGMFDAMGGYYGGGGGGGPSAGNGSQL 210

[Close]

BLAST of Cla004478 vs. NCBI nr
Match: gi|700200905|gb|KGN56038.1| (hypothetical protein Csa_3G049440 [Cucumis sativus])

HSP 1 Score: 360.9 bits (925), Expect = 1.5e-96
Identity = 178/209 (85.17%), Postives = 189/209 (90.43%), Query Frame = 1


Query: 2   LLTPNKPTSANNTPNSNHHLSNGGAATGNSPATSPVPVATA--NNEQSQQCVVREQDQYM 61
           +LTPN PTS N+ PN+N HLSNGG + GNS ATSP+ VA    NNEQ+QQC+VREQDQYM
Sbjct: 33  MLTPNNPTSINSNPNTNQHLSNGGTSIGNSSATSPLSVAATANNNEQNQQCLVREQDQYM 92

Query: 62  PIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDVL 121
           P+ANVIRIM+RILPSHAKISDD KETIQECVSEYISFIT EANERCQREQRKTVTAEDVL
Sbjct: 93  PMANVIRIMKRILPSHAKISDDTKETIQECVSEYISFITSEANERCQREQRKTVTAEDVL 152

Query: 122 WAMGKLGFDDYIEPLTVFLNRYRESESDRIRTEPILRRNVDYGPQVGMMPPYGQAFQIGH 181
           WAMGKLGFDDYIEPLTVFLNRYRESES  IRTEP+LRRNVDYG QVGM+ PYGQAFQIG 
Sbjct: 153 WAMGKLGFDDYIEPLTVFLNRYRESES--IRTEPMLRRNVDYGAQVGMISPYGQAFQIGQ 212

Query: 182 VPAGMFDAMGGYYGGGGSGGPSAGNGSQL 209
           VPAGMFDAMGGYYGGGGSGGPSAGN SQL
Sbjct: 213 VPAGMFDAMGGYYGGGGSGGPSAGNNSQL 239

[Close]

BLAST of Cla004478 vs. NCBI nr
Match: gi|700200906|gb|KGN56039.1| (hypothetical protein Csa_3G055940 [Cucumis sativus])

HSP 1 Score: 295.4 bits (755), Expect = 7.6e-77
Identity = 151/210 (71.90%), Postives = 162/210 (77.14%), Query Frame = 1


Query: 1   MLLTPNKPTSANNTPNSNHHLSNGGAATGNSPATSPVPVATA--NNEQSQQCVVREQDQY 60
           M+LTPN P S NN PN+NHHLS+GG + GNS ATSP+ VA    NNEQ+QQC+VREQDQY
Sbjct: 43  MMLTPNNPNSINNNPNTNHHLSDGGTSIGNSSATSPLSVAATANNNEQNQQCLVREQDQY 102

Query: 61  MPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDV 120
           MP+AN                             YISFIT EANERCQREQRKTVTAEDV
Sbjct: 103 MPMAN-----------------------------YISFITSEANERCQREQRKTVTAEDV 162

Query: 121 LWAMGKLGFDDYIEPLTVFLNRYRESESDRIRTEPILRRNVDYGPQVGMMPPYGQAFQIG 180
           LWAMGKLGFD+YIEPLTVFLNRYRESES  IRTEP+LRRNVDYGPQVGM+ PYGQAFQIG
Sbjct: 163 LWAMGKLGFDNYIEPLTVFLNRYRESES--IRTEPMLRRNVDYGPQVGMISPYGQAFQIG 221

Query: 181 HVPAGMFDAMGGYYGGGGSGGPSAGNGSQL 209
           HVPAGMFDAMGGYYGGGGS GPS GN SQL
Sbjct: 223 HVPAGMFDAMGGYYGGGGSCGPSTGNNSQL 221

[Close]

BLAST of Cla004478 vs. NCBI nr
Match: gi|728844156|gb|KHG23599.1| (Nuclear transcription factor Y subunit B-9 -like protein [Gossypium arboreum])

HSP 1 Score: 255.0 bits (650), Expect = 1.1e-64
Identity = 132/201 (65.67%), Postives = 157/201 (78.11%), Query Frame = 1


Query: 10  SANNTPNSNHHLSNGGAATGNSPATSPVPVATANNEQSQQCVVREQDQYMPIANVIRIMR 69
           S+N+  N+N  ++N  A  GN+  ++ +P           C+VREQDQYMPIANVIRIMR
Sbjct: 27  SSNSNTNTNTIINNNAANNGNAANSNTMP---------PPCMVREQDQYMPIANVIRIMR 86

Query: 70  RILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDVLWAMGKLGFDD 129
           RILP+HAKISDDAKETIQECVSEYISFITGEANERCQREQRKT+TAEDVLWAMGKLGFDD
Sbjct: 87  RILPTHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMGKLGFDD 146

Query: 130 YIEPLTVFLNRYRESESDR--IRTEPILRRNVDYGPQVGMMPPYGQAFQIGHVPAGMFD- 189
           Y+EPLTVFLNRYRE+E++R  +R+EP+L+R +DYGP + MM PYG  F +GH   G+FD 
Sbjct: 147 YVEPLTVFLNRYRENENERTSLRSEPMLKRGIDYGPSM-MMAPYGAGFHVGH-QQGIFDG 206

Query: 190 --AMGGYY---GGGGSGGPSA 203
             AMGGY      GG GGPS+
Sbjct: 207 ATAMGGYMRDGSSGGGGGPSS 216

[Close]

BLAST of Cla004478 vs. NCBI nr
Match: gi|590605470|ref|XP_007020494.1| (Ccaat-binding transcription factor subunit A, putative [Theobroma cacao])

HSP 1 Score: 247.3 bits (630), Expect = 2.4e-62
Identity = 131/200 (65.50%), Postives = 150/200 (75.00%), Query Frame = 1


Query: 19  HHLSNGGAAT---GNSPATSPVPVATANNEQSQQCVVREQDQYMPIANVIRIMRRILPSH 78
           H  S+ G +    G+S  T+       +N     C+VREQDQYMPIANVIRIMRRILP+H
Sbjct: 13  HAKSSSGLSVIQPGDSSNTNNGRNTANSNTMPPPCMVREQDQYMPIANVIRIMRRILPAH 72

Query: 79  AKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLT 138
           AKISDDAKETIQECVSEYISFITGEANERCQREQRKT+TAEDVLWAMGKLGFDDY+EPLT
Sbjct: 73  AKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMGKLGFDDYVEPLT 132

Query: 139 VFLNRYRESESDR--IRTEPILRRNVDYGPQVGMMPPYGQAFQIGHVPAGMFD------A 198
           VFL RYRESES+R  +R EPIL+R +DYGP + M PPYG  F +GH   G+FD      A
Sbjct: 133 VFLGRYRESESERTSLRGEPILKRGIDYGPMM-MAPPYGPGFHMGHHHQGIFDAAAAAAA 192

Query: 199 MGGYY-GGGGSGGPSAGNGS 207
           MGG+Y  G G+ G S+   S
Sbjct: 193 MGGFYRDGSGAAGSSSSQAS 211

The following BLAST results are available for this feature:

BLAST of Cla004478 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NFYB9_ARATH	1.3e-52	55.05	Nuclear transcription factor Y subunit B-9 OS=Arabidopsis thaliana GN=NFYB9 PE=1...	[more]
NFYB6_ARATH	1.4e-46	69.57	Nuclear transcription factor Y subunit B-6 OS=Arabidopsis thaliana GN=NFYB6 PE=1...	[more]
NFYB2_ARATH	4.2e-35	51.27	Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana GN=NFYB2 PE=2...	[more]
NFYB3_ARATH	1.0e-33	64.65	Nuclear transcription factor Y subunit B-3 OS=Arabidopsis thaliana GN=NFYB3 PE=2...	[more]
NFYB3_ORYSJ	1.2e-32	63.54	Nuclear transcription factor Y subunit B-3 OS=Oryza sativa subsp. japonica GN=NF...	[more]

BLAST of Cla004478 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L2U1_CUCSA	1.0e-96	85.17	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G049440 PE=4 SV=1	[more]
A0A0A0L4W1_CUCSA	5.3e-77	71.90	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G055940 PE=4 SV=1	[more]
A0A0B0PGM2_GOSAR	7.9e-65	65.67	Nuclear transcription factor Y subunit B-9-like protein OS=Gossypium arboreum GN...	[more]
A0A061FC04_THECC	1.7e-62	65.50	Ccaat-binding transcription factor subunit A, putative OS=Theobroma cacao GN=TCM...	[more]
A0A0D2SEP9_GOSRA	2.8e-62	73.10	Uncharacterized protein OS=Gossypium raimondii GN=B456_013G152500 PE=4 SV=1	[more]

BLAST of Cla004478 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659096616\|ref\|XP_008449191.1\|	2.4e-107	92.38	PREDICTED: nuclear transcription factor Y subunit B-9 [Cucumis melo]	[more]
gi\|700200905\|gb\|KGN56038.1\|	1.5e-96	85.17	hypothetical protein Csa_3G049440 [Cucumis sativus]	[more]
gi\|700200906\|gb\|KGN56039.1\|	7.6e-77	71.90	hypothetical protein Csa_3G055940 [Cucumis sativus]	[more]
gi\|728844156\|gb\|KHG23599.1\|	1.1e-64	65.67	Nuclear transcription factor Y subunit B-9 -like protein [Gossypium arboreum]	[more]
gi\|590605470\|ref\|XP_007020494.1\|	2.4e-62	65.50	Ccaat-binding transcription factor subunit A, putative [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR003956	Transcrpt_fac_NFYB/HAP3_CS
IPR003958	CBFA_NFYB_domain
IPR009072	Histone-fold

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

Vocabulary: **Molecular Function**
Term	Definition
GO:0043565	sequence-specific DNA binding
GO:0046982	protein heterodimerization activity

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0009738	abscisic acid-activated signaling pathway
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005667	transcription factor complex
molecular_function	GO:0046982	protein heterodimerization activity
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0033613	activating transcription factor binding
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cla004478	Cla004478	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cla004478	Cla004478.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cla004478.1.cds1	Cla004478.1.cds1	CDS

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003956	Transcription factor, NFYB/HAP3, conserved site	PROSITE	PS00685	NFYB_HAP3	coord: 89..105 scor
IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain	PFAM	PF00808	CBFD_NFYB_HMF	coord: 58..122 score: 1.3
IPR009072	Histone-fold	GENE3D	G3DSA:1.10.20.10		coord: 46..148 score: 1.3
IPR009072	Histone-fold	unknown	SSF47113	Histone-fold	coord: 55..148 score: 4.19
None	No IPR available	PRINTS	PR00615	CCAATSUBUNTA	coord: 105..123 score: 1.3E-15coord: 124..142 score: 1.3E-15coord: 86..104 score: 1.3
None	No IPR available	PANTHER	PTHR11064	CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED	coord: 37..191 score: 5.6
None	No IPR available	PANTHER	PTHR11064:SF20	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6-RELATED	coord: 37..191 score: 5.6