Cla004478 (gene) Watermelon (97103) v1

Overview
NameCla004478
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionNuclear transcription factor Y subunit B-6 (AHRD V1 ***- B6UH02_MAIZE); contains Interpro domain(s) IPR003957 Transcription factor, CBFA/NFYB, DNA topoisomerase
LocationChr10 : 4324746 .. 4325372 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGCTGACCCCAAACAAGCCAACCTCCGCCAACAACACTCCGAACAGCAACCACCACCTCTCCAACGGTGGAGCCGCCACTGGCAACTCCCCAGCAACCAGCCCCGTCCCAGTGGCGACTGCAAACAATGAGCAAAGCCAACAATGTGTGGTGCGAGAGCAAGACCAATACATGCCGATTGCTAATGTGATACGCATCATGCGGCGGATCTTGCCCTCCCATGCAAAGATATCAGACGACGCCAAAGAGACTATCCAAGAATGTGTGTCGGAGTACATCAGCTTCATAACTGGCGAGGCGAACGAGCGTTGCCAACGAGAGCAGCGCAAGACGGTAACAGCAGAGGATGTCCTTTGGGCTATGGGGAAGCTAGGTTTTGACGACTACATCGAACCGCTAACTGTTTTCCTCAACCGCTATCGTGAGTCGGAGAGTGACCGAATTCGCACTGAGCCGATTTTGAGGCGCAATGTGGATTACGGGCCACAAGTGGGGATGATGCCACCGTACGGGCAGGCATTTCAAATAGGGCACGTCCCAGCGGGGATGTTCGATGCAATGGGCGGATACTATGGCGGAGGCGGGAGCGGGGGGCCGAGCGCGGGGAATGGTAGCCAGCTTTGA

mRNA sequence

ATGTTGCTGACCCCAAACAAGCCAACCTCCGCCAACAACACTCCGAACAGCAACCACCACCTCTCCAACGGTGGAGCCGCCACTGGCAACTCCCCAGCAACCAGCCCCGTCCCAGTGGCGACTGCAAACAATGAGCAAAGCCAACAATGTGTGGTGCGAGAGCAAGACCAATACATGCCGATTGCTAATGTGATACGCATCATGCGGCGGATCTTGCCCTCCCATGCAAAGATATCAGACGACGCCAAAGAGACTATCCAAGAATGTGTGTCGGAGTACATCAGCTTCATAACTGGCGAGGCGAACGAGCGTTGCCAACGAGAGCAGCGCAAGACGGTAACAGCAGAGGATGTCCTTTGGGCTATGGGGAAGCTAGGTTTTGACGACTACATCGAACCGCTAACTGTTTTCCTCAACCGCTATCGTGAGTCGGAGAGTGACCGAATTCGCACTGAGCCGATTTTGAGGCGCAATGTGGATTACGGGCCACAAGTGGGGATGATGCCACCGTACGGGCAGGCATTTCAAATAGGGCACGTCCCAGCGGGGATGTTCGATGCAATGGGCGGATACTATGGCGGAGGCGGGAGCGGGGGGCCGAGCGCGGGGAATGGTAGCCAGCTTTGA

Coding sequence (CDS)

ATGTTGCTGACCCCAAACAAGCCAACCTCCGCCAACAACACTCCGAACAGCAACCACCACCTCTCCAACGGTGGAGCCGCCACTGGCAACTCCCCAGCAACCAGCCCCGTCCCAGTGGCGACTGCAAACAATGAGCAAAGCCAACAATGTGTGGTGCGAGAGCAAGACCAATACATGCCGATTGCTAATGTGATACGCATCATGCGGCGGATCTTGCCCTCCCATGCAAAGATATCAGACGACGCCAAAGAGACTATCCAAGAATGTGTGTCGGAGTACATCAGCTTCATAACTGGCGAGGCGAACGAGCGTTGCCAACGAGAGCAGCGCAAGACGGTAACAGCAGAGGATGTCCTTTGGGCTATGGGGAAGCTAGGTTTTGACGACTACATCGAACCGCTAACTGTTTTCCTCAACCGCTATCGTGAGTCGGAGAGTGACCGAATTCGCACTGAGCCGATTTTGAGGCGCAATGTGGATTACGGGCCACAAGTGGGGATGATGCCACCGTACGGGCAGGCATTTCAAATAGGGCACGTCCCAGCGGGGATGTTCGATGCAATGGGCGGATACTATGGCGGAGGCGGGAGCGGGGGGCCGAGCGCGGGGAATGGTAGCCAGCTTTGA

Protein sequence

MLLTPNKPTSANNTPNSNHHLSNGGAATGNSPATSPVPVATANNEQSQQCVVREQDQYMPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLTVFLNRYRESESDRIRTEPILRRNVDYGPQVGMMPPYGQAFQIGHVPAGMFDAMGGYYGGGGSGGPSAGNGSQL
Homology
[Close]
BLAST of Cla004478 vs. Swiss-Prot
Match: NFYB9_ARATH (Nuclear transcription factor Y subunit B-9 OS=Arabidopsis thaliana GN=NFYB9 PE=1 SV=2)

HSP 1 Score: 207.6 bits (527), Expect = 1.3e-52
Identity = 120/218 (55.05%), Postives = 137/218 (62.84%), Query Frame = 1 

Query: 8   PTSANNTPNSNHHLSNGGAATGNSPATSPVPVATANN-------EQSQQCVVREQDQYMP 67
           P S    P S   L+    +   +P TS V VA A +       +Q   CV REQDQYMP
Sbjct: 6   PFSHYQLPKSISELNLDQHSNNPTPMTSSVVVAGAGDKNNGIVVQQQPPCVAREQDQYMP 65

Query: 68  IANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDVLW 127
           IANVIRIMR+ LPSHAKISDDAKETIQECVSEYISF+TGEANERCQREQRKT+TAED+LW
Sbjct: 66  IANVIRIMRKTLPSHAKISDDAKETIQECVSEYISFVTGEANERCQREQRKTITAEDILW 125

Query: 128 AMGKLGFDDYIEPLTVFLNRYRESESDR---IRTEPILRRNV-------DYGPQVGMMPP 187
           AM KLGFD+Y++PLTVF+NRYRE E+DR   +R EP   R          +GP  G+ PP
Sbjct: 126 AMSKLGFDNYVDPLTVFINRYREIETDRGSALRGEPPSLRQTYGGNGIGFHGPSHGLPPP 185

Query: 188 YGQAFQIGHVPAGMFDAMGGYYGGGGSG--GPSAGNGS 207
               +  G +   M    G YY  G SG    S G GS
Sbjct: 186 --GPYGYGMLDQSMVMGGGRYYQNGSSGQDESSVGGGS 221

[Close]
BLAST of Cla004478 vs. Swiss-Prot
Match: NFYB6_ARATH (Nuclear transcription factor Y subunit B-6 OS=Arabidopsis thaliana GN=NFYB6 PE=1 SV=2)

HSP 1 Score: 187.6 bits (475), Expect = 1.4e-46
Identity = 96/138 (69.57%), Postives = 110/138 (79.71%), Query Frame = 1 

Query: 12  NNTPNSNHHLSNGGAATGNS-PATSPVPVATANNEQSQQCVVREQDQYMPIANVIRIMRR 71
           N TP+     +N   A G+  P     P  T+N  + ++C VREQD++MPIANVIRIMRR
Sbjct: 16  NTTPSPPGLAANFLMAEGSMRPPEFNQPNKTSNGGE-EECTVREQDRFMPIANVIRIMRR 75

Query: 72  ILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDVLWAMGKLGFDDY 131
           ILP+HAKISDD+KETIQECVSEYISFITGEANERCQREQRKT+TAEDVLWAM KLGFDDY
Sbjct: 76  ILPAHAKISDDSKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSKLGFDDY 135

Query: 132 IEPLTVFLNRYRESESDR 149
           IEPLT++L+RYRE E +R
Sbjct: 136 IEPLTLYLHRYRELEGER 152

[Close]
BLAST of Cla004478 vs. Swiss-Prot
Match: NFYB2_ARATH (Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana GN=NFYB2 PE=2 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 4.2e-35
Identity = 81/158 (51.27%), Postives = 106/158 (67.09%), Query Frame = 1 

Query: 43  NNEQSQQCVV-REQDQYMPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEA 102
           NN+  Q  +  REQD+++PIANV RIM++ LP++AKIS DAKET+QECVSE+ISF+TGEA
Sbjct: 15  NNQNGQSSLSPREQDRFLPIANVSRIMKKALPANAKISKDAKETMQECVSEFISFVTGEA 74

Query: 103 NERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLTVFLNRYRESESDRIRTEPILRRNVDY 162
           +++CQ+E+RKT+  +D+LWAM  LGF+DY+EPL V+L R+RE E +R      L R    
Sbjct: 75  SDKCQKEKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFREIEGERTG----LGR---- 134

Query: 163 GPQVGMMPPYGQAFQIGHVPAGMFDAM---GGYYGGGG 197
            PQ G           G V     DA+   GG+YGGGG
Sbjct: 135 -PQTG-----------GEVGEHQRDAVGDGGGFYGGGG 152

[Close]
BLAST of Cla004478 vs. Swiss-Prot
Match: NFYB3_ARATH (Nuclear transcription factor Y subunit B-3 OS=Arabidopsis thaliana GN=NFYB3 PE=2 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 1.0e-33
Identity = 64/99 (64.65%), Postives = 85/99 (85.86%), Query Frame = 1 

Query: 53  REQDQYMPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKT 112
           REQD+++PIANV RIM++ LP++AKIS DAKET+QECVSE+ISFITGEA+++CQRE+RKT
Sbjct: 20  REQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKT 79

Query: 113 VTAEDVLWAMGKLGFDDYIEPLTVFLNRYRESESDRIRT 152
           +  +D+LWAM  LGF+DY+EPL V+L +YRE E ++  T
Sbjct: 80  INGDDLLWAMTTLGFEDYVEPLKVYLQKYREVEGEKTTT 118

[Close]
BLAST of Cla004478 vs. Swiss-Prot
Match: NFYB3_ORYSJ (Nuclear transcription factor Y subunit B-3 OS=Oryza sativa subsp. japonica GN=NFYB3 PE=1 SV=2)

HSP 1 Score: 141.4 bits (355), Expect = 1.2e-32
Identity = 61/96 (63.54%), Postives = 82/96 (85.42%), Query Frame = 1 

Query: 52  VREQDQYMPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRK 111
           VREQD+++PIAN+ RIM++ +P++ KI+ DAKET+QECVSE+ISFIT EA+++CQRE+RK
Sbjct: 36  VREQDRFLPIANISRIMKKAIPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRK 95

Query: 112 TVTAEDVLWAMGKLGFDDYIEPLTVFLNRYRESESD 148
           T+  +D+LWAM  LGF+DYIEPL V+L +YRE E D
Sbjct: 96  TINGDDLLWAMATLGFEDYIEPLKVYLQKYREMEGD 131

[Close]
BLAST of Cla004478 vs. TrEMBL
Match: A0A0A0L2U1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G049440 PE=4 SV=1)

HSP 1 Score: 360.9 bits (925), Expect = 1.0e-96
Identity = 178/209 (85.17%), Postives = 189/209 (90.43%), Query Frame = 1 

Query: 2   LLTPNKPTSANNTPNSNHHLSNGGAATGNSPATSPVPVATA--NNEQSQQCVVREQDQYM 61
           +LTPN PTS N+ PN+N HLSNGG + GNS ATSP+ VA    NNEQ+QQC+VREQDQYM
Sbjct: 33  MLTPNNPTSINSNPNTNQHLSNGGTSIGNSSATSPLSVAATANNNEQNQQCLVREQDQYM 92

Query: 62  PIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDVL 121
           P+ANVIRIM+RILPSHAKISDD KETIQECVSEYISFIT EANERCQREQRKTVTAEDVL
Sbjct: 93  PMANVIRIMKRILPSHAKISDDTKETIQECVSEYISFITSEANERCQREQRKTVTAEDVL 152

Query: 122 WAMGKLGFDDYIEPLTVFLNRYRESESDRIRTEPILRRNVDYGPQVGMMPPYGQAFQIGH 181
           WAMGKLGFDDYIEPLTVFLNRYRESES  IRTEP+LRRNVDYG QVGM+ PYGQAFQIG 
Sbjct: 153 WAMGKLGFDDYIEPLTVFLNRYRESES--IRTEPMLRRNVDYGAQVGMISPYGQAFQIGQ 212

Query: 182 VPAGMFDAMGGYYGGGGSGGPSAGNGSQL 209
           VPAGMFDAMGGYYGGGGSGGPSAGN SQL
Sbjct: 213 VPAGMFDAMGGYYGGGGSGGPSAGNNSQL 239

[Close]
BLAST of Cla004478 vs. TrEMBL
Match: A0A0A0L4W1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G055940 PE=4 SV=1)

HSP 1 Score: 295.4 bits (755), Expect = 5.3e-77
Identity = 151/210 (71.90%), Postives = 162/210 (77.14%), Query Frame = 1 

Query: 1   MLLTPNKPTSANNTPNSNHHLSNGGAATGNSPATSPVPVATA--NNEQSQQCVVREQDQY 60
           M+LTPN P S NN PN+NHHLS+GG + GNS ATSP+ VA    NNEQ+QQC+VREQDQY
Sbjct: 43  MMLTPNNPNSINNNPNTNHHLSDGGTSIGNSSATSPLSVAATANNNEQNQQCLVREQDQY 102

Query: 61  MPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDV 120
           MP+AN                             YISFIT EANERCQREQRKTVTAEDV
Sbjct: 103 MPMAN-----------------------------YISFITSEANERCQREQRKTVTAEDV 162

Query: 121 LWAMGKLGFDDYIEPLTVFLNRYRESESDRIRTEPILRRNVDYGPQVGMMPPYGQAFQIG 180
           LWAMGKLGFD+YIEPLTVFLNRYRESES  IRTEP+LRRNVDYGPQVGM+ PYGQAFQIG
Sbjct: 163 LWAMGKLGFDNYIEPLTVFLNRYRESES--IRTEPMLRRNVDYGPQVGMISPYGQAFQIG 221

Query: 181 HVPAGMFDAMGGYYGGGGSGGPSAGNGSQL 209
           HVPAGMFDAMGGYYGGGGS GPS GN SQL
Sbjct: 223 HVPAGMFDAMGGYYGGGGSCGPSTGNNSQL 221

[Close]
BLAST of Cla004478 vs. TrEMBL
Match: A0A0B0PGM2_GOSAR (Nuclear transcription factor Y subunit B-9-like protein OS=Gossypium arboreum GN=F383_03265 PE=4 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 7.9e-65
Identity = 132/201 (65.67%), Postives = 157/201 (78.11%), Query Frame = 1 

Query: 10  SANNTPNSNHHLSNGGAATGNSPATSPVPVATANNEQSQQCVVREQDQYMPIANVIRIMR 69
           S+N+  N+N  ++N  A  GN+  ++ +P           C+VREQDQYMPIANVIRIMR
Sbjct: 27  SSNSNTNTNTIINNNAANNGNAANSNTMP---------PPCMVREQDQYMPIANVIRIMR 86

Query: 70  RILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDVLWAMGKLGFDD 129
           RILP+HAKISDDAKETIQECVSEYISFITGEANERCQREQRKT+TAEDVLWAMGKLGFDD
Sbjct: 87  RILPTHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMGKLGFDD 146

Query: 130 YIEPLTVFLNRYRESESDR--IRTEPILRRNVDYGPQVGMMPPYGQAFQIGHVPAGMFD- 189
           Y+EPLTVFLNRYRE+E++R  +R+EP+L+R +DYGP + MM PYG  F +GH   G+FD 
Sbjct: 147 YVEPLTVFLNRYRENENERTSLRSEPMLKRGIDYGPSM-MMAPYGAGFHVGH-QQGIFDG 206

Query: 190 --AMGGYY---GGGGSGGPSA 203
             AMGGY      GG GGPS+
Sbjct: 207 ATAMGGYMRDGSSGGGGGPSS 216

[Close]
BLAST of Cla004478 vs. TrEMBL
Match: A0A061FC04_THECC (Ccaat-binding transcription factor subunit A, putative OS=Theobroma cacao GN=TCM_030636 PE=4 SV=1)

HSP 1 Score: 247.3 bits (630), Expect = 1.7e-62
Identity = 131/200 (65.50%), Postives = 150/200 (75.00%), Query Frame = 1 

Query: 19  HHLSNGGAAT---GNSPATSPVPVATANNEQSQQCVVREQDQYMPIANVIRIMRRILPSH 78
           H  S+ G +    G+S  T+       +N     C+VREQDQYMPIANVIRIMRRILP+H
Sbjct: 13  HAKSSSGLSVIQPGDSSNTNNGRNTANSNTMPPPCMVREQDQYMPIANVIRIMRRILPAH 72

Query: 79  AKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLT 138
           AKISDDAKETIQECVSEYISFITGEANERCQREQRKT+TAEDVLWAMGKLGFDDY+EPLT
Sbjct: 73  AKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMGKLGFDDYVEPLT 132

Query: 139 VFLNRYRESESDR--IRTEPILRRNVDYGPQVGMMPPYGQAFQIGHVPAGMFD------A 198
           VFL RYRESES+R  +R EPIL+R +DYGP + M PPYG  F +GH   G+FD      A
Sbjct: 133 VFLGRYRESESERTSLRGEPILKRGIDYGPMM-MAPPYGPGFHMGHHHQGIFDAAAAAAA 192

Query: 199 MGGYY-GGGGSGGPSAGNGS 207
           MGG+Y  G G+ G S+   S
Sbjct: 193 MGGFYRDGSGAAGSSSSQAS 211

[Close]
BLAST of Cla004478 vs. TrEMBL
Match: A0A0D2SEP9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G152500 PE=4 SV=1)

HSP 1 Score: 246.5 bits (628), Expect = 2.8e-62
Identity = 125/171 (73.10%), Postives = 142/171 (83.04%), Query Frame = 1 

Query: 40  ATANNEQSQQCVVREQDQYMPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITG 99
           A  +N     C+VREQDQYMPIANVIRIMRRILP+HAKISDDAKETIQECVSEYISFITG
Sbjct: 40  AANSNTMPPPCMVREQDQYMPIANVIRIMRRILPTHAKISDDAKETIQECVSEYISFITG 99

Query: 100 EANERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLTVFLNRYRESESDR--IRTEPILRR 159
           EANERCQREQRKT+TAEDVLWAMGKLGFDDY+EPLTVFLNRYRE+E++R  +R+EP+L+R
Sbjct: 100 EANERCQREQRKTITAEDVLWAMGKLGFDDYVEPLTVFLNRYRENENERTSLRSEPMLKR 159

Query: 160 NVDYGPQVGMMPPYGQAFQIGHVPAGMFD---AMGGYY---GGGGSGGPSA 203
            +DYGP + MM PYG  F +GH   G+FD   AMGGY      GG GGPS+
Sbjct: 160 GIDYGPSM-MMAPYGAGFHVGH-QQGIFDGATAMGGYMRDGSSGGGGGPSS 208

[Close]
BLAST of Cla004478 vs. NCBI nr
Match: gi|659096616|ref|XP_008449191.1| (PREDICTED: nuclear transcription factor Y subunit B-9 [Cucumis melo])

HSP 1 Score: 396.7 bits (1018), Expect = 2.4e-107
Identity = 194/210 (92.38%), Postives = 199/210 (94.76%), Query Frame = 1 

Query: 1   MLLTPNKPTSANNTPNSNHHLSNGGAATGNSPATSPVPVATA--NNEQSQQCVVREQDQY 60
           M++TPNK TS NNTPNSNHHLSNGG ATGNS ATSP+ VA    NNEQ+QQCVVREQDQY
Sbjct: 1   MMVTPNKATSINNTPNSNHHLSNGGTATGNSSATSPLSVAATANNNEQNQQCVVREQDQY 60

Query: 61  MPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDV 120
           MPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDV
Sbjct: 61  MPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDV 120

Query: 121 LWAMGKLGFDDYIEPLTVFLNRYRESESDRIRTEPILRRNVDYGPQVGMMPPYGQAFQIG 180
           LWAMGKLGFDDYIEPLTVFLNRYRESESDRIRTEPILRRNVDYGPQVGM+ PYGQAFQIG
Sbjct: 121 LWAMGKLGFDDYIEPLTVFLNRYRESESDRIRTEPILRRNVDYGPQVGMISPYGQAFQIG 180

Query: 181 HVPAGMFDAMGGYYGGGGSGGPSAGNGSQL 209
           HVPAGMFDAMGGYYGGGG GGPSAGNGSQL
Sbjct: 181 HVPAGMFDAMGGYYGGGGGGGPSAGNGSQL 210

[Close]
BLAST of Cla004478 vs. NCBI nr
Match: gi|700200905|gb|KGN56038.1| (hypothetical protein Csa_3G049440 [Cucumis sativus])

HSP 1 Score: 360.9 bits (925), Expect = 1.5e-96
Identity = 178/209 (85.17%), Postives = 189/209 (90.43%), Query Frame = 1 

Query: 2   LLTPNKPTSANNTPNSNHHLSNGGAATGNSPATSPVPVATA--NNEQSQQCVVREQDQYM 61
           +LTPN PTS N+ PN+N HLSNGG + GNS ATSP+ VA    NNEQ+QQC+VREQDQYM
Sbjct: 33  MLTPNNPTSINSNPNTNQHLSNGGTSIGNSSATSPLSVAATANNNEQNQQCLVREQDQYM 92

Query: 62  PIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDVL 121
           P+ANVIRIM+RILPSHAKISDD KETIQECVSEYISFIT EANERCQREQRKTVTAEDVL
Sbjct: 93  PMANVIRIMKRILPSHAKISDDTKETIQECVSEYISFITSEANERCQREQRKTVTAEDVL 152

Query: 122 WAMGKLGFDDYIEPLTVFLNRYRESESDRIRTEPILRRNVDYGPQVGMMPPYGQAFQIGH 181
           WAMGKLGFDDYIEPLTVFLNRYRESES  IRTEP+LRRNVDYG QVGM+ PYGQAFQIG 
Sbjct: 153 WAMGKLGFDDYIEPLTVFLNRYRESES--IRTEPMLRRNVDYGAQVGMISPYGQAFQIGQ 212

Query: 182 VPAGMFDAMGGYYGGGGSGGPSAGNGSQL 209
           VPAGMFDAMGGYYGGGGSGGPSAGN SQL
Sbjct: 213 VPAGMFDAMGGYYGGGGSGGPSAGNNSQL 239

[Close]
BLAST of Cla004478 vs. NCBI nr
Match: gi|700200906|gb|KGN56039.1| (hypothetical protein Csa_3G055940 [Cucumis sativus])

HSP 1 Score: 295.4 bits (755), Expect = 7.6e-77
Identity = 151/210 (71.90%), Postives = 162/210 (77.14%), Query Frame = 1 

Query: 1   MLLTPNKPTSANNTPNSNHHLSNGGAATGNSPATSPVPVATA--NNEQSQQCVVREQDQY 60
           M+LTPN P S NN PN+NHHLS+GG + GNS ATSP+ VA    NNEQ+QQC+VREQDQY
Sbjct: 43  MMLTPNNPNSINNNPNTNHHLSDGGTSIGNSSATSPLSVAATANNNEQNQQCLVREQDQY 102

Query: 61  MPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDV 120
           MP+AN                             YISFIT EANERCQREQRKTVTAEDV
Sbjct: 103 MPMAN-----------------------------YISFITSEANERCQREQRKTVTAEDV 162

Query: 121 LWAMGKLGFDDYIEPLTVFLNRYRESESDRIRTEPILRRNVDYGPQVGMMPPYGQAFQIG 180
           LWAMGKLGFD+YIEPLTVFLNRYRESES  IRTEP+LRRNVDYGPQVGM+ PYGQAFQIG
Sbjct: 163 LWAMGKLGFDNYIEPLTVFLNRYRESES--IRTEPMLRRNVDYGPQVGMISPYGQAFQIG 221

Query: 181 HVPAGMFDAMGGYYGGGGSGGPSAGNGSQL 209
           HVPAGMFDAMGGYYGGGGS GPS GN SQL
Sbjct: 223 HVPAGMFDAMGGYYGGGGSCGPSTGNNSQL 221

[Close]
BLAST of Cla004478 vs. NCBI nr
Match: gi|728844156|gb|KHG23599.1| (Nuclear transcription factor Y subunit B-9 -like protein [Gossypium arboreum])

HSP 1 Score: 255.0 bits (650), Expect = 1.1e-64
Identity = 132/201 (65.67%), Postives = 157/201 (78.11%), Query Frame = 1 

Query: 10  SANNTPNSNHHLSNGGAATGNSPATSPVPVATANNEQSQQCVVREQDQYMPIANVIRIMR 69
           S+N+  N+N  ++N  A  GN+  ++ +P           C+VREQDQYMPIANVIRIMR
Sbjct: 27  SSNSNTNTNTIINNNAANNGNAANSNTMP---------PPCMVREQDQYMPIANVIRIMR 86

Query: 70  RILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDVLWAMGKLGFDD 129
           RILP+HAKISDDAKETIQECVSEYISFITGEANERCQREQRKT+TAEDVLWAMGKLGFDD
Sbjct: 87  RILPTHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMGKLGFDD 146

Query: 130 YIEPLTVFLNRYRESESDR--IRTEPILRRNVDYGPQVGMMPPYGQAFQIGHVPAGMFD- 189
           Y+EPLTVFLNRYRE+E++R  +R+EP+L+R +DYGP + MM PYG  F +GH   G+FD 
Sbjct: 147 YVEPLTVFLNRYRENENERTSLRSEPMLKRGIDYGPSM-MMAPYGAGFHVGH-QQGIFDG 206

Query: 190 --AMGGYY---GGGGSGGPSA 203
             AMGGY      GG GGPS+
Sbjct: 207 ATAMGGYMRDGSSGGGGGPSS 216

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BLAST of Cla004478 vs. NCBI nr
Match: gi|590605470|ref|XP_007020494.1| (Ccaat-binding transcription factor subunit A, putative [Theobroma cacao])

HSP 1 Score: 247.3 bits (630), Expect = 2.4e-62
Identity = 131/200 (65.50%), Postives = 150/200 (75.00%), Query Frame = 1 

Query: 19  HHLSNGGAAT---GNSPATSPVPVATANNEQSQQCVVREQDQYMPIANVIRIMRRILPSH 78
           H  S+ G +    G+S  T+       +N     C+VREQDQYMPIANVIRIMRRILP+H
Sbjct: 13  HAKSSSGLSVIQPGDSSNTNNGRNTANSNTMPPPCMVREQDQYMPIANVIRIMRRILPAH 72

Query: 79  AKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLT 138
           AKISDDAKETIQECVSEYISFITGEANERCQREQRKT+TAEDVLWAMGKLGFDDY+EPLT
Sbjct: 73  AKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMGKLGFDDYVEPLT 132

Query: 139 VFLNRYRESESDR--IRTEPILRRNVDYGPQVGMMPPYGQAFQIGHVPAGMFD------A 198
           VFL RYRESES+R  +R EPIL+R +DYGP + M PPYG  F +GH   G+FD      A
Sbjct: 133 VFLGRYRESESERTSLRGEPILKRGIDYGPMM-MAPPYGPGFHMGHHHQGIFDAAAAAAA 192

Query: 199 MGGYY-GGGGSGGPSAGNGS 207
           MGG+Y  G G+ G S+   S
Sbjct: 193 MGGFYRDGSGAAGSSSSQAS 211

The following BLAST results are available for this feature:
BLAST of Cla004478 vs. Swiss-Prot
Match NameE-valueIdentityDescription
NFYB9_ARATH1.3e-5255.05Nuclear transcription factor Y subunit B-9 OS=Arabidopsis thaliana GN=NFYB9 PE=1... [more]
NFYB6_ARATH1.4e-4669.57Nuclear transcription factor Y subunit B-6 OS=Arabidopsis thaliana GN=NFYB6 PE=1... [more]
NFYB2_ARATH4.2e-3551.27Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana GN=NFYB2 PE=2... [more]
NFYB3_ARATH1.0e-3364.65Nuclear transcription factor Y subunit B-3 OS=Arabidopsis thaliana GN=NFYB3 PE=2... [more]
NFYB3_ORYSJ1.2e-3263.54Nuclear transcription factor Y subunit B-3 OS=Oryza sativa subsp. japonica GN=NF... [more]
BLAST of Cla004478 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L2U1_CUCSA1.0e-9685.17Uncharacterized protein OS=Cucumis sativus GN=Csa_3G049440 PE=4 SV=1[more]
A0A0A0L4W1_CUCSA5.3e-7771.90Uncharacterized protein OS=Cucumis sativus GN=Csa_3G055940 PE=4 SV=1[more]
A0A0B0PGM2_GOSAR7.9e-6565.67Nuclear transcription factor Y subunit B-9-like protein OS=Gossypium arboreum GN... [more]
A0A061FC04_THECC1.7e-6265.50Ccaat-binding transcription factor subunit A, putative OS=Theobroma cacao GN=TCM... [more]
A0A0D2SEP9_GOSRA2.8e-6273.10Uncharacterized protein OS=Gossypium raimondii GN=B456_013G152500 PE=4 SV=1[more]
BLAST of Cla004478 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659096616|ref|XP_008449191.1|2.4e-10792.38PREDICTED: nuclear transcription factor Y subunit B-9 [Cucumis melo][more]
gi|700200905|gb|KGN56038.1|1.5e-9685.17hypothetical protein Csa_3G049440 [Cucumis sativus][more]
gi|700200906|gb|KGN56039.1|7.6e-7771.90hypothetical protein Csa_3G055940 [Cucumis sativus][more]
gi|728844156|gb|KHG23599.1|1.1e-6465.67Nuclear transcription factor Y subunit B-9 -like protein [Gossypium arboreum][more]
gi|590605470|ref|XP_007020494.1|2.4e-6265.50Ccaat-binding transcription factor subunit A, putative [Theobroma cacao][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR003956Transcrpt_fac_NFYB/HAP3_CS
IPR003958CBFA_NFYB_domain
IPR009072Histone-fold
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0043565sequence-specific DNA binding
GO:0046982protein heterodimerization activity
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009738 abscisic acid-activated signaling pathway
biological_process GO:0045893 positive regulation of transcription, DNA-templated
biological_process GO:0009860 pollen tube growth
biological_process GO:0009555 pollen development
biological_process GO:0009435 NAD biosynthetic process
biological_process GO:0010262 somatic embryogenesis
biological_process GO:0045723 positive regulation of fatty acid biosynthetic process
biological_process GO:0009785 blue light signaling pathway
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005667 transcription factor complex
cellular_component GO:0005634 nucleus
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
molecular_function GO:0043565 sequence-specific DNA binding
molecular_function GO:0046982 protein heterodimerization activity
molecular_function GO:0033613 activating transcription factor binding
molecular_function GO:0005524 ATP binding
molecular_function GO:0000309 nicotinamide-nucleotide adenylyltransferase activity
molecular_function GO:0004515 nicotinate-nucleotide adenylyltransferase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla004478Cla004478.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003956Transcription factor, NFYB/HAP3, conserved sitePROSITEPS00685NFYB_HAP3coord: 89..105
scor
IPR003958Transcription factor CBF/NF-Y/archaeal histone domainPFAMPF00808CBFD_NFYB_HMFcoord: 58..122
score: 1.3
IPR009072Histone-foldGENE3DG3DSA:1.10.20.10coord: 46..148
score: 1.3
IPR009072Histone-foldunknownSSF47113Histone-foldcoord: 55..148
score: 4.19
NoneNo IPR availablePRINTSPR00615CCAATSUBUNTAcoord: 105..123
score: 1.3E-15coord: 124..142
score: 1.3E-15coord: 86..104
score: 1.3
NoneNo IPR availablePANTHERPTHR11064CCAAT-BINDING TRANSCRIPTION FACTOR-RELATEDcoord: 37..191
score: 5.6
NoneNo IPR availablePANTHERPTHR11064:SF20NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6-RELATEDcoord: 37..191
score: 5.6

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla004478Cla97C10G188900Watermelon (97103) v2wmwmbB057
Cla004478Csa3G048940Cucumber (Chinese Long) v2cuwmB201
Cla004478MELO3C014120Melon (DHL92) v3.5.1mewmB447
Cla004478ClCG10G004460Watermelon (Charleston Gray)wcgwmB057
Cla004478CSPI03G04260Wild cucumber (PI 183967)cpiwmB201
Cla004478CSPI06G09270Wild cucumber (PI 183967)cpiwmB466
Cla004478Cucsa.042150Cucumber (Gy14) v1cgywmB017
Cla004478CmaCh20G006860Cucurbita maxima (Rimu)cmawmB512
Cla004478CmaCh16G009620Cucurbita maxima (Rimu)cmawmB303
Cla004478CmoCh16G010030Cucurbita moschata (Rifu)cmowmB297
Cla004478Lsi10G000420Bottle gourd (USVL1VR-Ls)lsiwmB050
Cla004478Lsi05G005110Bottle gourd (USVL1VR-Ls)lsiwmB351
Cla004478Cp4.1LG14g07850Cucurbita pepo (Zucchini)cpewmB214
Cla004478Cp4.1LG08g08410Cucurbita pepo (Zucchini)cpewmB828
Cla004478CsGy3G004280Cucumber (Gy14) v2cgybwmB189
Cla004478MELO3C014120.2Melon (DHL92) v3.6.1medwmB439
Cla004478CsaV3_3G004250Cucumber (Chinese Long) v3cucwmB210
Cla004478Bhi11G000375Wax gourdwgowmB023
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla004478Silver-seed gourdcarwmB0010
Cla004478Silver-seed gourdcarwmB0331
Cla004478Silver-seed gourdcarwmB0586
Cla004478Watermelon (97103) v2wmwmbB052
Cla004478Cucurbita maxima (Rimu)cmawmB294
Cla004478Cucurbita maxima (Rimu)cmawmB783
Cla004478Cucurbita moschata (Rifu)cmowmB286
Cla004478Cucurbita moschata (Rifu)cmowmB504
Cla004478Cucurbita moschata (Rifu)cmowmB776
Cla004478Cucurbita pepo (Zucchini)cpewmB203
Cla004478Cucurbita pepo (Zucchini)cpewmB278
Cla004478Cucurbita pepo (Zucchini)cpewmB834