Cla004273.1 (mRNA) Watermelon (97103) v1

Overview
NameCla004273
TypemRNA
OrganismCitrullus. lanatus (Watermelon (97103) v1)
Description3&apos-5&apos exonuclease domain-containing protein (AHRD V1 **-- Q9FIN8_ARATH); contains Interpro domain(s) IPR002782 Protein of unknown function DUF82
LocationChr5 : 9413533 .. 9415300 (+)
Sequence length852
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATATTGGGTTGAAAGTGATTCTGGAAAAGCAGGATGTGCATGAGAAGATATTAAGGTCCAAAGTTTCTGAAGCCTCAAACATTATCAGAGCTACTGCATCTGATTTTGCACAGAGTATGGCTAATATAAGGGGAAATTGTTCTGCATCTTCGAGTATAAATAGTATGCATATGGATAAAGATCTTCAGAAAATTGTCAAGAACTACGGTGAAAAAATTATTTTGAAAGAGTCAGACAAAAAGCCCAGGACCTCCAAACGAAAAGGCAAGAGATCATCAACTATGAAAGTGGTTTGCAGTGAAAAGCAAATCGTGTGTGTTGAAGATTGGCAAGGCCCCCCACCATGGGATTTGTCCTTTGGGGGTGATGGATGCCCTAAATTTCTATGTGATGTTATGGTAAATATTTAGGTTTCCTCTTTTCTCCTTGAAGCTTGTAGGTTTTATTTTCTTAAACGTATGCAAGATTGCAAGACAAGAAGAAACTAAAAAAATAGGGCTCTCATATTTTAGTCAAATTCTGAATCATCGAAAAAAGCACTTCTAGTAAAAAGTGTTTGTGGTCAATATCTTACTTTAATGAGTGTTTGGTAGGCCAAAGTTTAGGGGACAAGAACAAGTCTAATAGATGATAAATGTTTACTCCAGGTTGAAGGCCTTGCAAAACATCTACGTTGTGTTGGGATTGATGCTGCAGTTCCATTTTCCAAAAAGCCGGACACTAGGTTCTAAATTATTAACAGTTTTAATGGCTAACATTTTGCAGATTTATTTTGTAAGTTACCCACGGAGATATTGTCCATGCAGTCAATTGTAATTCTTTATCATATGTAGGGAATTAATTGATCAAGCGTGCAAGGAGAAGAGAGTACTCTTGACCAGGGATGCTAAACTGCTGAGACACGAGTATTTGATATGTAATCAAATATACAGAGTTAAAAGTCTTCTAAAGAACGAACAGTTACTCGAGGTATTGATGCCAATTGCCTATAATTGTAGCCATGTGCAATGGGAGTCAAAAGCATTTGTTCATTAATGGACCAACCTTGGTGATCTTGGAAACAATTTTGAGGAACTAAGCCTCCTGAACGTTCCTTAAATCCCTGGATTACCTTCTTTCAACAATAGTTCAAATTACCATATCACCATGCCTTTTTATATCAAATGTGTGTTCCCTACATTTCAAATTTGGTGGAGATTTATAGGTTGAAAGATTTGTGGAGATGAGAATGGAAAAGGAACTTTTAATGAGATCAATGAAGTAATAAAAATTTCATTAGAACCTAGGGACTTCAGAGTATCTATGTCTTTGCAGTTGAAAGCCTACGATACTTAATTTTGATTTCTATTCTAACTCTTTCTGGGTTGATAATAGATATATTTTTCCCTTCCAGTGAATAGGCACTCTTATATAGCTCTGAACTGTTAATTTAGCTTTGCACTGGAAAACAAAATAAATTCTCCAGTTAGGTTATTTTGCAGATACGGGAGGCCCATTCTAAATCCTCTATCATTTAACCTGTTGTAGGTTATTGAAACTTTCAATTTGAAAATTAGTGAGGATCAGCTGATGTCTAGATGCACCAAATGCAATGGAAGGTTTATTCAAAAGTCCCTTACAACAGAGGAGGCTGTGCAGGCAGCGAAGGGTTTCCAAAAAATTCCTAACTGTTTGTTTGACAGGAATTTAGAGTTCTGGCAGTGCATGGACTGTCACCAACTATACTGGGAGGTAATCTTCTACAGTGTTGTCGTTCTGCAATGA

mRNA sequence

ATGAATATTGGGTTGAAAGTGATTCTGGAAAAGCAGGATGTGCATGAGAAGATATTAAGGTCCAAAGTTTCTGAAGCCTCAAACATTATCAGAGCTACTGCATCTGATTTTGCACAGAGTATGGCTAATATAAGGGGAAATTGTTCTGCATCTTCGAGTATAAATAGTATGCATATGGATAAAGATCTTCAGAAAATTGTCAAGAACTACGGTGAAAAAATTATTTTGAAAGAGTCAGACAAAAAGCCCAGGACCTCCAAACGAAAAGGCAAGAGATCATCAACTATGAAAGTGGTTTGCAGTGAAAAGCAAATCGTGTGTGTTGAAGATTGGCAAGGCCCCCCACCATGGGATTTGTCCTTTGGGGGTGATGGATGCCCTAAATTTCTATGTGATGTTATGGTTGAAGGCCTTGCAAAACATCTACGTTGTGTTGGGATTGATGCTGCAGTTCCATTTTCCAAAAAGCCGGACACTAGGGAATTAATTGATCAAGCGTGCAAGGAGAAGAGAGTACTCTTGACCAGGGATGCTAAACTGCTGAGACACGAGTATTTGATATGTAATCAAATATACAGAGTTAAAAGTCTTCTAAAGAACGAACAGTTACTCGAGGTTATTGAAACTTTCAATTTGAAAATTAGTGAGGATCAGCTGATGTCTAGATGCACCAAATGCAATGGAAGGTTTATTCAAAAGTCCCTTACAACAGAGGAGGCTGTGCAGGCAGCGAAGGGTTTCCAAAAAATTCCTAACTGTTTGTTTGACAGGAATTTAGAGTTCTGGCAGTGCATGGACTGTCACCAACTATACTGGGAGGTAATCTTCTACAGTGTTGTCGTTCTGCAATGA

Coding sequence (CDS)

ATGAATATTGGGTTGAAAGTGATTCTGGAAAAGCAGGATGTGCATGAGAAGATATTAAGGTCCAAAGTTTCTGAAGCCTCAAACATTATCAGAGCTACTGCATCTGATTTTGCACAGAGTATGGCTAATATAAGGGGAAATTGTTCTGCATCTTCGAGTATAAATAGTATGCATATGGATAAAGATCTTCAGAAAATTGTCAAGAACTACGGTGAAAAAATTATTTTGAAAGAGTCAGACAAAAAGCCCAGGACCTCCAAACGAAAAGGCAAGAGATCATCAACTATGAAAGTGGTTTGCAGTGAAAAGCAAATCGTGTGTGTTGAAGATTGGCAAGGCCCCCCACCATGGGATTTGTCCTTTGGGGGTGATGGATGCCCTAAATTTCTATGTGATGTTATGGTTGAAGGCCTTGCAAAACATCTACGTTGTGTTGGGATTGATGCTGCAGTTCCATTTTCCAAAAAGCCGGACACTAGGGAATTAATTGATCAAGCGTGCAAGGAGAAGAGAGTACTCTTGACCAGGGATGCTAAACTGCTGAGACACGAGTATTTGATATGTAATCAAATATACAGAGTTAAAAGTCTTCTAAAGAACGAACAGTTACTCGAGGTTATTGAAACTTTCAATTTGAAAATTAGTGAGGATCAGCTGATGTCTAGATGCACCAAATGCAATGGAAGGTTTATTCAAAAGTCCCTTACAACAGAGGAGGCTGTGCAGGCAGCGAAGGGTTTCCAAAAAATTCCTAACTGTTTGTTTGACAGGAATTTAGAGTTCTGGCAGTGCATGGACTGTCACCAACTATACTGGGAGGTAATCTTCTACAGTGTTGTCGTTCTGCAATGA

Protein sequence

MNIGLKVILEKQDVHEKILRSKVSEASNIIRATASDFAQSMANIRGNCSASSSINSMHMDKDLQKIVKNYGEKIILKESDKKPRTSKRKGKRSSTMKVVCSEKQIVCVEDWQGPPPWDLSFGGDGCPKFLCDVMVEGLAKHLRCVGIDAAVPFSKKPDTRELIDQACKEKRVLLTRDAKLLRHEYLICNQIYRVKSLLKNEQLLEVIETFNLKISEDQLMSRCTKCNGRFIQKSLTTEEAVQAAKGFQKIPNCLFDRNLEFWQCMDCHQLYWEVIFYSVVVLQ
Homology
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BLAST of Cla004273 vs. Swiss-Prot
Match: MUT7_HUMAN (Exonuclease mut-7 homolog OS=Homo sapiens GN=EXD3 PE=2 SV=3)

HSP 1 Score: 52.8 bits (125), Expect = 7.3e-06
Identity = 32/102 (31.37%), Postives = 52/102 (50.98%), Query Frame = 1 

Query: 128 KFLCDVMVEGLAKHLRCVGIDAAVPFSKKPDTRELIDQACKEKRVLLTRDAKL--LRHEY 187
           + +CD M++GLA+ LRC+G+DA +      D R   + A +E R++LT       LR + 
Sbjct: 631 RVVCDNMLQGLARSLRCLGVDARM-LGNGEDHRRAAEVARQEGRIILTSGQPFHKLRAQV 690

Query: 188 LICNQIYRVKSLLKNEQLLEVIETFNLKISEDQLMSRCTKCN 228
                +    SL   +Q   V++ FN++++   + SRC  CN
Sbjct: 691 GAGRCLSVDCSLKAQQQAKAVLKHFNVRVTHADIFSRCQACN 731

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BLAST of Cla004273 vs. TrEMBL
Match: A0A0A0L6Q0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G238160 PE=4 SV=1)

HSP 1 Score: 490.7 bits (1262), Expect = 1.2e-135
Identity = 243/277 (87.73%), Postives = 257/277 (92.78%), Query Frame = 1 

Query: 1   MNIGLKVILEKQDVHEKILRSKVSEASNIIRATASDFAQSMANIRGNCSASSSINSMHMD 60
           MN GL+VILEKQD+HEKILR+KVSEASNIIRATAS F QSMANIRG CSASSSIN M MD
Sbjct: 233 MNTGLRVILEKQDMHEKILRTKVSEASNIIRATASGFPQSMANIRGICSASSSINCMPMD 292

Query: 61  KDLQKIVKNYGEKIILKESDKKPRTSKRKGKRSSTMKVVCSEKQIVCVEDWQGPPPWDLS 120
           +DLQK+VK+YGE+IILKESDKKP+TSKRK KRSSTMKV C EKQIV  EDW GPPPWDLS
Sbjct: 293 EDLQKVVKSYGERIILKESDKKPKTSKRKSKRSSTMKVGCIEKQIVSDEDWHGPPPWDLS 352

Query: 121 FGGDGCPKFLCDVMVEGLAKHLRCVGIDAAVPFSKKPDTRELIDQACKEKRVLLTRDAKL 180
            GGDGCPKFLCDVMVEGLAKHLRCVG+DAAVPFSK P +RELIDQA KEKRVLLTRDAKL
Sbjct: 353 LGGDGCPKFLCDVMVEGLAKHLRCVGVDAAVPFSKNPYSRELIDQAHKEKRVLLTRDAKL 412

Query: 181 LRHEYLICNQIYRVKSLLKNEQLLEVIETFNLKISEDQLMSRCTKCNGRFIQKSLTTEEA 240
           LRH YL+ NQIYRVK+LLKNEQLLEVIETF+LKISEDQLMSRCTKCNGRFIQKSLTTEEA
Sbjct: 413 LRHGYLLRNQIYRVKNLLKNEQLLEVIETFDLKISEDQLMSRCTKCNGRFIQKSLTTEEA 472

Query: 241 VQAAKGFQKIPNCLFDRNLEFWQCMDCHQLYWEVIFY 278
           VQAAKGFQKIPNCLFD+NLEFWQCMDCHQLYWE I Y
Sbjct: 473 VQAAKGFQKIPNCLFDQNLEFWQCMDCHQLYWEGIQY 509

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BLAST of Cla004273 vs. TrEMBL
Match: W9S1T5_9ROSA (Putative exonuclease mut-7-like protein OS=Morus notabilis GN=L484_011852 PE=4 SV=1)

HSP 1 Score: 390.6 bits (1002), Expect = 1.6e-105
Identity = 196/281 (69.75%), Postives = 229/281 (81.49%), Query Frame = 1 

Query: 2   NIGLKVILEKQDVHEKILRSKVSEASNIIRATAS-DFAQSMANIRGNCSASSSINSMHMD 61
           N+GLK ILEK  V EKI+R+   +A +I+RATA  D +Q +A+  G    S   +++ MD
Sbjct: 237 NVGLKEILEKNGVCEKIIRTTFCDALDIVRATACFDISQKIASEEGMVLRSQQRSTLPMD 296

Query: 62  KDLQKIVKNYGEKIILKESDKKPRTSKRKGKRSSTMKVVCSEKQIVCVEDWQGPPPWDLS 121
           + L KIV  YGEK++LKESDKKP+ SKRKGKR S+  ++  EKQ+  +ED QGP PWDLS
Sbjct: 297 ESLLKIVNRYGEKLVLKESDKKPKISKRKGKRRSSAGLINKEKQLENLEDGQGPIPWDLS 356

Query: 122 FGGDGCPKFLCDVMVEGLAKHLRCVGIDAAVPFSKKPDTRELIDQACKEKRVLLTRDAKL 181
            GG+G PKFLCDVMVEGLAKHLRCVGIDAA+P SKKP+ RELI QA +E RVLLTRDAKL
Sbjct: 357 LGGNGSPKFLCDVMVEGLAKHLRCVGIDAAIPHSKKPEPRELIGQAHRENRVLLTRDAKL 416

Query: 182 LRHEYLICNQIYRVKSLLKNEQLLEVIETFNLKISEDQLMSRCTKCNGRFIQKSLTTEEA 241
           LRH+Y++ NQIYRVKSLLKNEQLLEVIETF LKISEDQLMSRCTKCNGRFIQK LTTEEA
Sbjct: 417 LRHQYILKNQIYRVKSLLKNEQLLEVIETFQLKISEDQLMSRCTKCNGRFIQKPLTTEEA 476

Query: 242 VQAAKGFQKIPNCLFDRNLEFWQCMDCHQLYWEVIFYSVVV 282
           V+AAKGFQ+IPNCLF++NLEFWQCMDC+QLYWE   Y   V
Sbjct: 477 VEAAKGFQRIPNCLFNQNLEFWQCMDCNQLYWEGTQYKNAV 517

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BLAST of Cla004273 vs. TrEMBL
Match: F6H7B8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_16s0098g01430 PE=4 SV=1)

HSP 1 Score: 390.2 bits (1001), Expect = 2.2e-105
Identity = 194/270 (71.85%), Postives = 222/270 (82.22%), Query Frame = 1 

Query: 5   LKVILEKQDVHEKILRSKVSEASNIIRATASDFAQSMANIRGNCSASSSINSMHMDKDLQ 64
           LK ILE  D+  K+LRSK  +A +I+RAT S+F Q  A +    S SS  N++ MD  L 
Sbjct: 48  LKKILENPDICHKLLRSKFFDAVDIVRATTSEFPQRKATLEEVVSWSSCRNTIPMDDSLF 107

Query: 65  KIVKNYGEKIILKESDKKPRTSKRKGKRSSTMKVVCSEKQIVCVEDWQGPPPWDLSFGGD 124
            IV+ YGE+I+LKESD+KP+T K+KGK+ S+   VC EKQI   ++W  PPPWDL+ GGD
Sbjct: 108 SIVRKYGERILLKESDRKPKT-KKKGKKQSS--AVCKEKQIEIFDEWCSPPPWDLTLGGD 167

Query: 125 GCPKFLCDVMVEGLAKHLRCVGIDAAVPFSKKPDTRELIDQACKEKRVLLTRDAKLLRHE 184
           GCPKFLCDVMVEGLAKHLRCVGIDAA+P+SKKP++RELIDQA KE RVLLTRD+KLLRHE
Sbjct: 168 GCPKFLCDVMVEGLAKHLRCVGIDAAIPYSKKPESRELIDQARKENRVLLTRDSKLLRHE 227

Query: 185 YLICNQIYRVKSLLKNEQLLEVIETFNLKISEDQLMSRCTKCNGRFIQKSLTTEEAVQAA 244
           YLI NQIYRVK+LLKNEQLLEVIETF LKI EDQLMSRCTKCNGRFIQK LT EEA +AA
Sbjct: 228 YLIKNQIYRVKNLLKNEQLLEVIETFQLKICEDQLMSRCTKCNGRFIQKPLTAEEASEAA 287

Query: 245 KGFQKIPNCLFDRNLEFWQCMDCHQLYWEV 275
           KGFQ IPNCLFD NLEFWQCMDC+QLYWEV
Sbjct: 288 KGFQVIPNCLFDSNLEFWQCMDCNQLYWEV 314

[Close]
BLAST of Cla004273 vs. TrEMBL
Match: M5X298_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa004292mg PE=4 SV=1)

HSP 1 Score: 389.4 bits (999), Expect = 3.7e-105
Identity = 191/271 (70.48%), Postives = 223/271 (82.29%), Query Frame = 1 

Query: 3   IGLKVILEKQDVHEKILRSKVSEASNIIRATASDFAQSMANIRGNCSASSSINSMHMDKD 62
           +GLK +LEK DV  KI+R K  EA +I+RAT S    ++A   G    +   N++ MD+ 
Sbjct: 229 LGLKEVLEKLDVCNKIVRMKFHEALDIVRATTSYIYPNIATEEGMALRTRPRNTLPMDEL 288

Query: 63  LQKIVKNYGEKIILKESDKKPRTSKRKGKRSSTMKVVCSEKQIVCVEDWQGPPPWDLSFG 122
           L ++V  YGE+I+LKESDK+ RTSKRK KR S++ ++C EKQ    EDWQGPPPWDL+ G
Sbjct: 289 LARVVNKYGEEILLKESDKRARTSKRKSKRRSSVGLICKEKQGQSFEDWQGPPPWDLTLG 348

Query: 123 GDGCPKFLCDVMVEGLAKHLRCVGIDAAVPFSKKPDTRELIDQACKEKRVLLTRDAKLLR 182
           GDG PKFLCDVMVEGLAKHLRCVGI+AA+P+SKKP  R LI+QA KEKRVLLTRDAKLLR
Sbjct: 349 GDGHPKFLCDVMVEGLAKHLRCVGINAAIPYSKKPGPRALIEQANKEKRVLLTRDAKLLR 408

Query: 183 HEYLICNQIYRVKSLLKNEQLLEVIETFNLKISEDQLMSRCTKCNGRFIQKSLTTEEAVQ 242
           H+YLI NQIYRVK+LLKNEQLLE+IETF LKI EDQLMSRCTKCNGRFIQK LTTEEAV+
Sbjct: 409 HDYLIKNQIYRVKNLLKNEQLLEIIETFQLKICEDQLMSRCTKCNGRFIQKPLTTEEAVE 468

Query: 243 AAKGFQKIPNCLFDRNLEFWQCMDCHQLYWE 274
           AAKGFQ+IPN LFD+NLEFWQCMDC+QLYWE
Sbjct: 469 AAKGFQRIPNYLFDKNLEFWQCMDCNQLYWE 499

[Close]
BLAST of Cla004273 vs. TrEMBL
Match: A0A067F8Y2_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g009783mg PE=4 SV=1)

HSP 1 Score: 389.0 bits (998), Expect = 4.8e-105
Identity = 194/275 (70.55%), Postives = 230/275 (83.64%), Query Frame = 1 

Query: 1   MNIGLKVILEKQDVHEKILRSKVSEASNIIRATASDFAQSMANIRGNCSASSSINSMHMD 60
           +++GLK ILEK D+  K +R K+ EA +IIRAT S ++Q +    G  S  S +N+M MD
Sbjct: 238 LDLGLKGILEKPDIGNKTVRFKLCEALDIIRAT-SYYSQCLPE--GVVSRVSYLNTMPMD 297

Query: 61  KDLQKIVKNYGEKIILKESDKKPRTSKRKGKRSSTMKVVCSEKQIVCVEDWQGPPPWDLS 120
           + L KIV+ YGEKI+L+E DK P+TSK+KG++ S++ V   EK++  + DWQGPPPWDLS
Sbjct: 298 ESLVKIVRKYGEKILLRECDKAPKTSKKKGRKRSSVIVDSREKRLDDIGDWQGPPPWDLS 357

Query: 121 FGGDGCPKFLCDVMVEGLAKHLRCVGIDAAVPFSKKPDTRELIDQACKEKRVLLTRDAKL 180
            GGDG PKFLCDVMVEGLAKHLRCVGIDAA P SKKP+ RELIDQ  KEKRVLLTRDAKL
Sbjct: 358 LGGDGYPKFLCDVMVEGLAKHLRCVGIDAATPRSKKPEPRELIDQTSKEKRVLLTRDAKL 417

Query: 181 LRHEYLICNQIYRVKSLLKNEQLLEVIETFNLKISEDQLMSRCTKCNGRFIQKSLTTEEA 240
           LRH+YLI NQIYRVKSLLKN+QLLEVIE F LKISEDQLMSRCTKCNGRFIQK L+TEEA
Sbjct: 418 LRHQYLIKNQIYRVKSLLKNQQLLEVIEAFQLKISEDQLMSRCTKCNGRFIQKPLSTEEA 477

Query: 241 VQAAKGFQKIPNCLFDRNLEFWQCMDCHQLYWEVI 276
           V+AAKGFQ+IP+CLFD+NL+FWQCMDC+QLYWEV+
Sbjct: 478 VEAAKGFQRIPDCLFDKNLQFWQCMDCNQLYWEVM 509

[Close]
BLAST of Cla004273 vs. NCBI nr
Match: gi|659111952|ref|XP_008455993.1| (PREDICTED: exonuclease mut-7 homolog [Cucumis melo])

HSP 1 Score: 493.8 bits (1270), Expect = 2.0e-136
Identity = 243/277 (87.73%), Postives = 258/277 (93.14%), Query Frame = 1 

Query: 1   MNIGLKVILEKQDVHEKILRSKVSEASNIIRATASDFAQSMANIRGNCSASSSINSMHMD 60
           MN GLKVILEKQD+H+KILR+KVSEASNIIRATAS F QSMANIRGNCS SSSIN M MD
Sbjct: 232 MNTGLKVILEKQDMHKKILRTKVSEASNIIRATASGFPQSMANIRGNCSVSSSINCMPMD 291

Query: 61  KDLQKIVKNYGEKIILKESDKKPRTSKRKGKRSSTMKVVCSEKQIVCVEDWQGPPPWDLS 120
           +DLQK+VK+YGE+I+LKESDKKP+ SKRKGKRSSTMKV CSEKQIV  EDW GPPPWDLS
Sbjct: 292 EDLQKVVKSYGERIVLKESDKKPKISKRKGKRSSTMKVGCSEKQIVSDEDWLGPPPWDLS 351

Query: 121 FGGDGCPKFLCDVMVEGLAKHLRCVGIDAAVPFSKKPDTRELIDQACKEKRVLLTRDAKL 180
            GGDGCPKFLCDVMVEGLAKHLRCVG+DAAVPFSK P +RELID+A KEKRVLLTRDAKL
Sbjct: 352 LGGDGCPKFLCDVMVEGLAKHLRCVGVDAAVPFSKNPYSRELIDKAHKEKRVLLTRDAKL 411

Query: 181 LRHEYLICNQIYRVKSLLKNEQLLEVIETFNLKISEDQLMSRCTKCNGRFIQKSLTTEEA 240
           LRH YL+ NQIYRVK+LLKNEQLLEVIETFNLKISEDQLMSRCTKCNGRFIQKSLTTEEA
Sbjct: 412 LRHGYLLRNQIYRVKNLLKNEQLLEVIETFNLKISEDQLMSRCTKCNGRFIQKSLTTEEA 471

Query: 241 VQAAKGFQKIPNCLFDRNLEFWQCMDCHQLYWEVIFY 278
           VQAAKGFQKIPNCLFD+NLEFWQCMDCHQLYWE I Y
Sbjct: 472 VQAAKGFQKIPNCLFDQNLEFWQCMDCHQLYWEGIQY 508

[Close]
BLAST of Cla004273 vs. NCBI nr
Match: gi|449456993|ref|XP_004146233.1| (PREDICTED: exonuclease mut-7 homolog [Cucumis sativus])

HSP 1 Score: 490.7 bits (1262), Expect = 1.7e-135
Identity = 243/277 (87.73%), Postives = 257/277 (92.78%), Query Frame = 1 

Query: 1   MNIGLKVILEKQDVHEKILRSKVSEASNIIRATASDFAQSMANIRGNCSASSSINSMHMD 60
           MN GL+VILEKQD+HEKILR+KVSEASNIIRATAS F QSMANIRG CSASSSIN M MD
Sbjct: 233 MNTGLRVILEKQDMHEKILRTKVSEASNIIRATASGFPQSMANIRGICSASSSINCMPMD 292

Query: 61  KDLQKIVKNYGEKIILKESDKKPRTSKRKGKRSSTMKVVCSEKQIVCVEDWQGPPPWDLS 120
           +DLQK+VK+YGE+IILKESDKKP+TSKRK KRSSTMKV C EKQIV  EDW GPPPWDLS
Sbjct: 293 EDLQKVVKSYGERIILKESDKKPKTSKRKSKRSSTMKVGCIEKQIVSDEDWHGPPPWDLS 352

Query: 121 FGGDGCPKFLCDVMVEGLAKHLRCVGIDAAVPFSKKPDTRELIDQACKEKRVLLTRDAKL 180
            GGDGCPKFLCDVMVEGLAKHLRCVG+DAAVPFSK P +RELIDQA KEKRVLLTRDAKL
Sbjct: 353 LGGDGCPKFLCDVMVEGLAKHLRCVGVDAAVPFSKNPYSRELIDQAHKEKRVLLTRDAKL 412

Query: 181 LRHEYLICNQIYRVKSLLKNEQLLEVIETFNLKISEDQLMSRCTKCNGRFIQKSLTTEEA 240
           LRH YL+ NQIYRVK+LLKNEQLLEVIETF+LKISEDQLMSRCTKCNGRFIQKSLTTEEA
Sbjct: 413 LRHGYLLRNQIYRVKNLLKNEQLLEVIETFDLKISEDQLMSRCTKCNGRFIQKSLTTEEA 472

Query: 241 VQAAKGFQKIPNCLFDRNLEFWQCMDCHQLYWEVIFY 278
           VQAAKGFQKIPNCLFD+NLEFWQCMDCHQLYWE I Y
Sbjct: 473 VQAAKGFQKIPNCLFDQNLEFWQCMDCHQLYWEGIQY 509

[Close]
BLAST of Cla004273 vs. NCBI nr
Match: gi|1009138500|ref|XP_015886621.1| (PREDICTED: uncharacterized protein LOC107421806 [Ziziphus jujuba])

HSP 1 Score: 400.2 bits (1027), Expect = 3.0e-108
Identity = 197/274 (71.90%), Postives = 231/274 (84.31%), Query Frame = 1 

Query: 1   MNIGLKVILEKQDVHEKILRSKVSEASNIIRATAS-DFAQSMANIRGNCSASSSINSMHM 60
           +NIGLK ILEK D  +KI R K SEA +I+RATAS D  Q +A + G    S   +++ M
Sbjct: 240 VNIGLKEILEKDDGCDKISRLKFSEALHIVRATASSDVFQKIATVDGLVLKSRQRSTLPM 299

Query: 61  DKDLQKIVKNYGEKIILKESDKKPRTSKRKGKRSSTMKVVCSEKQIVCVEDWQGPPPWDL 120
           D+ L KIVK YGEKI+LKESDKKP+ +KRKGK+ S++ ++C EK+    ++ QGPPPWDL
Sbjct: 300 DESLLKIVKKYGEKILLKESDKKPKITKRKGKKRSSVGLICKEKRPEACDERQGPPPWDL 359

Query: 121 SFGGDGCPKFLCDVMVEGLAKHLRCVGIDAAVPFSKKPDTRELIDQACKEKRVLLTRDAK 180
           + GG+GCPKFLCDVMVEGLAKHLRCVGIDAA+P SKKPD+RELID A +E RVLLTRDAK
Sbjct: 360 TLGGNGCPKFLCDVMVEGLAKHLRCVGIDAAIPHSKKPDSRELIDHAKRENRVLLTRDAK 419

Query: 181 LLRHEYLICNQIYRVKSLLKNEQLLEVIETFNLKISEDQLMSRCTKCNGRFIQKSLTTEE 240
           LLRHEY+I NQIYRVKSLLKNEQLLEVIETF L ISEDQLMSRCTKCNGRFIQK L+TEE
Sbjct: 420 LLRHEYIIKNQIYRVKSLLKNEQLLEVIETFQLTISEDQLMSRCTKCNGRFIQKPLSTEE 479

Query: 241 AVQAAKGFQKIPNCLFDRNLEFWQCMDCHQLYWE 274
           A++AAKGFQ+IP+CLFD+NLEFWQCMDC+QLYWE
Sbjct: 480 AIEAAKGFQRIPSCLFDKNLEFWQCMDCNQLYWE 513

[Close]
BLAST of Cla004273 vs. NCBI nr
Match: gi|645258040|ref|XP_008234697.1| (PREDICTED: uncharacterized protein LOC103333607 [Prunus mume])

HSP 1 Score: 396.0 bits (1016), Expect = 5.6e-107
Identity = 193/273 (70.70%), Postives = 226/273 (82.78%), Query Frame = 1 

Query: 1   MNIGLKVILEKQDVHEKILRSKVSEASNIIRATASDFAQSMANIRGNCSASSSINSMHMD 60
           +N+GLK +LEK DV  KI+R K  EA +I+RAT S    ++A   G    +   N++ MD
Sbjct: 227 VNLGLKEVLEKLDVCNKIVRMKFREALDIVRATTSYIYPNIATEEGMALRTRPRNTLPMD 286

Query: 61  KDLQKIVKNYGEKIILKESDKKPRTSKRKGKRSSTMKVVCSEKQIVCVEDWQGPPPWDLS 120
           + L ++V  YGE+I+LKESDK+ RTSKRK KR S++ ++C EKQ    EDWQGPPPWDL+
Sbjct: 287 ELLVRVVNKYGEEILLKESDKRARTSKRKSKRRSSVGLICKEKQGQSFEDWQGPPPWDLT 346

Query: 121 FGGDGCPKFLCDVMVEGLAKHLRCVGIDAAVPFSKKPDTRELIDQACKEKRVLLTRDAKL 180
            GGDG PKFLCDVMVEGLAKHLRCVGI+AA+P+SKKP  R LI+QA KEKRVLLTRDAKL
Sbjct: 347 LGGDGHPKFLCDVMVEGLAKHLRCVGINAAIPYSKKPGPRALIEQANKEKRVLLTRDAKL 406

Query: 181 LRHEYLICNQIYRVKSLLKNEQLLEVIETFNLKISEDQLMSRCTKCNGRFIQKSLTTEEA 240
           LRH+YLI NQIYRVK+LLKNEQLLE+IETF LKI EDQLMSRCTKCNGRFIQK LTTEEA
Sbjct: 407 LRHDYLIKNQIYRVKNLLKNEQLLEIIETFQLKICEDQLMSRCTKCNGRFIQKPLTTEEA 466

Query: 241 VQAAKGFQKIPNCLFDRNLEFWQCMDCHQLYWE 274
           V+AAKGFQ+IPNCLFD+NLEFWQCMDC+QLYWE
Sbjct: 467 VEAAKGFQRIPNCLFDKNLEFWQCMDCNQLYWE 499

[Close]
BLAST of Cla004273 vs. NCBI nr
Match: gi|743902673|ref|XP_011044682.1| (PREDICTED: exonuclease mut-7 homolog [Populus euphratica])

HSP 1 Score: 394.0 bits (1011), Expect = 2.1e-106
Identity = 188/274 (68.61%), Postives = 235/274 (85.77%), Query Frame = 1 

Query: 1   MNIGLKVILEKQDVHEKILRSKVSEASNIIRAT-ASDFAQSMANIRGNCSASSSINSMHM 60
           +N+GLK ILEK D+ +KI+R K  EAS+I +AT +S+  Q +A +    S +SS N+M M
Sbjct: 229 VNLGLKEILEKHDIDDKIIRIKYFEASHIFQATVSSEHCQRIAEVDVAVSRTSSRNTMPM 288

Query: 61  DKDLQKIVKNYGEKIILKESDKKPRTSKRKGKRSSTMKVVCSEKQIVCVEDWQGPPPWDL 120
           ++ L KIV+ YGEKI+L++SD+KP+ +++K K+ S++  V  EKQ+    DWQGPPPWDL
Sbjct: 289 NESLLKIVRKYGEKILLRKSDRKPKAARKKVKKHSSLVAVTREKQLDNTGDWQGPPPWDL 348

Query: 121 SFGGDGCPKFLCDVMVEGLAKHLRCVGIDAAVPFSKKPDTRELIDQACKEKRVLLTRDAK 180
           S GGDGCPKFLCDVM+EGLAKHLRCVG+DAA+P SKKP++REL+DQA +E+RVLLTRDAK
Sbjct: 349 SLGGDGCPKFLCDVMIEGLAKHLRCVGVDAAIPSSKKPESRELLDQAYREQRVLLTRDAK 408

Query: 181 LLRHEYLICNQIYRVKSLLKNEQLLEVIETFNLKISEDQLMSRCTKCNGRFIQKSLTTEE 240
           LLRH+YLI NQIYRVK+LLKNEQLLEVIETF L+I+EDQLMSRCTKCNGRFIQK LTTEE
Sbjct: 409 LLRHQYLIKNQIYRVKNLLKNEQLLEVIETFQLQINEDQLMSRCTKCNGRFIQKPLTTEE 468

Query: 241 AVQAAKGFQKIPNCLFDRNLEFWQCMDCHQLYWE 274
           AV+AAKGFQ+IP+CLF++NLEFWQCM+C+QLYWE
Sbjct: 469 AVEAAKGFQRIPDCLFNKNLEFWQCMECNQLYWE 502

The following BLAST results are available for this feature:
BLAST of Cla004273 vs. Swiss-Prot
Match NameE-valueIdentityDescription
MUT7_HUMAN7.3e-0631.37Exonuclease mut-7 homolog OS=Homo sapiens GN=EXD3 PE=2 SV=3[more]
BLAST of Cla004273 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L6Q0_CUCSA1.2e-13587.73Uncharacterized protein OS=Cucumis sativus GN=Csa_3G238160 PE=4 SV=1[more]
W9S1T5_9ROSA1.6e-10569.75Putative exonuclease mut-7-like protein OS=Morus notabilis GN=L484_011852 PE=4 S... [more]
F6H7B8_VITVI2.2e-10571.85Putative uncharacterized protein OS=Vitis vinifera GN=VIT_16s0098g01430 PE=4 SV=... [more]
M5X298_PRUPE3.7e-10570.48Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa004292mg PE=4 SV=1[more]
A0A067F8Y2_CITSI4.8e-10570.55Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g009783mg PE=4 SV=1[more]
BLAST of Cla004273 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659111952|ref|XP_008455993.1|2.0e-13687.73PREDICTED: exonuclease mut-7 homolog [Cucumis melo][more]
gi|449456993|ref|XP_004146233.1|1.7e-13587.73PREDICTED: exonuclease mut-7 homolog [Cucumis sativus][more]
gi|1009138500|ref|XP_015886621.1|3.0e-10871.90PREDICTED: uncharacterized protein LOC107421806 [Ziziphus jujuba][more]
gi|645258040|ref|XP_008234697.1|5.6e-10770.70PREDICTED: uncharacterized protein LOC103333607 [Prunus mume][more]
gi|743902673|ref|XP_011044682.1|2.1e-10668.61PREDICTED: exonuclease mut-7 homolog [Populus euphratica][more]
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR002782Mut7-C_RNAse_dom
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0090305 nucleic acid phosphodiester bond hydrolysis
cellular_component GO:0005575 cellular_component
molecular_function GO:0008408 3'-5' exonuclease activity
molecular_function GO:0003676 nucleic acid binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cla004273Cla004273gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cla004273Cla004273.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cla004273.1.cds1Cla004273.1.cds1CDS
Cla004273.1.cds2Cla004273.1.cds2CDS
Cla004273.1.cds3Cla004273.1.cds3CDS
Cla004273.1.cds4Cla004273.1.cds4CDS


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002782Mut7-C RNAse domainPFAMPF01927Mut7-Ccoord: 127..273
score: 7.4
NoneNo IPR availablePANTHERPTHR12124POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATEDcoord: 8..277
score: 9.0E
NoneNo IPR availablePANTHERPTHR12124:SF383'-5' EXONUCLEASE DOMAIN-CONTAINING PROTEINcoord: 8..277
score: 9.0E