Cla003559.1 (mRNA) Watermelon (97103) v1

Overview
NameCla003559
TypemRNA
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr1 : 14474436 .. 14474852 (+)
Sequence length339
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAGGATCCTGTGATAATAATTTTTTTGAAGGGATCCCAAGTGCTTCAGGACTCCCTAGTGCTGTCATACCATTGGTATGTATGCTCTCTGTTCAAGTTATCTTTGTTCTTTTCTTTACCAGGTAATTTATTTATTTATTATTTTTTTTGTAGTCTCCCTTGAGTCCGCACCTTCAAGAGCTTGCGGAGCCGAACAGTGAAGAATCTTTGATGGGGTCTTATAATTTGGATTCATCCATGGACAAGGTTGGTACTTCTACATTACCAATAGCTGAAACAATTGAACCACCCTTGCGACCTCGAGCTATTTTAGAGGACATTCGACGCGGCAAAATGAAAGTAGGTAGTGAGAGCGTTGGAGTTTTAACCTCTCCACTTGAAGAAGTTGGTTGTTCTAAAGCCCTCTTCATATAG

mRNA sequence

ATGAAAGGATCCTGTGATAATAATTTTTTTGAAGGGATCCCAAGTGCTTCAGGACTCCCTAGTGCTGTCATACCATTGTCTCCCTTGAGTCCGCACCTTCAAGAGCTTGCGGAGCCGAACAGTGAAGAATCTTTGATGGGGTCTTATAATTTGGATTCATCCATGGACAAGGTTGGTACTTCTACATTACCAATAGCTGAAACAATTGAACCACCCTTGCGACCTCGAGCTATTTTAGAGGACATTCGACGCGGCAAAATGAAAGTAGGTAGTGAGAGCGTTGGAGTTTTAACCTCTCCACTTGAAGAAGTTGGTTGTTCTAAAGCCCTCTTCATATAG

Coding sequence (CDS)

ATGAAAGGATCCTGTGATAATAATTTTTTTGAAGGGATCCCAAGTGCTTCAGGACTCCCTAGTGCTGTCATACCATTGTCTCCCTTGAGTCCGCACCTTCAAGAGCTTGCGGAGCCGAACAGTGAAGAATCTTTGATGGGGTCTTATAATTTGGATTCATCCATGGACAAGGTTGGTACTTCTACATTACCAATAGCTGAAACAATTGAACCACCCTTGCGACCTCGAGCTATTTTAGAGGACATTCGACGCGGCAAAATGAAAGTAGGTAGTGAGAGCGTTGGAGTTTTAACCTCTCCACTTGAAGAAGTTGGTTGTTCTAAAGCCCTCTTCATATAG

Protein sequence

MKGSCDNNFFEGIPSASGLPSAVIPLSPLSPHLQELAEPNSEESLMGSYNLDSSMDKVGTSTLPIAETIEPPLRPRAILEDIRRGKMKVGSESVGVLTSPLEEVGCSKALFI
Homology
[Close]
BLAST of Cla003559 vs. TrEMBL
Match: E5GCB9_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.6e-06
Identity = 33/74 (44.59%), Postives = 48/74 (64.86%), Query Frame = 1 

Query: 36  LAEPNSEESLMGSYNLDSSMDKVGTSTLPIAETIEPPLRPRAILEDIRRGKMKVGSESVG 95
           L EP+S+ESL G + +DS+ ++VGTS  P+ +  E  L P A+ E+IRRGKM VG + + 
Sbjct: 388 LIEPDSDESLTGPHVVDSAFEEVGTSKTPVNKPAEQSLCPSALFEEIRRGKMTVGGKDLE 447

Query: 96  VLTSPLEEVGCSKA 110
             +S  +E  C KA
Sbjct: 448 SHSS--KEGVCPKA 459

[Close]
BLAST of Cla003559 vs. NCBI nr
Match: gi|307136292|gb|ADN34118.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 59.7 bits (143), Expect = 3.8e-06
Identity = 33/74 (44.59%), Postives = 48/74 (64.86%), Query Frame = 1 

Query: 36  LAEPNSEESLMGSYNLDSSMDKVGTSTLPIAETIEPPLRPRAILEDIRRGKMKVGSESVG 95
           L EP+S+ESL G + +DS+ ++VGTS  P+ +  E  L P A+ E+IRRGKM VG + + 
Sbjct: 388 LIEPDSDESLTGPHVVDSAFEEVGTSKTPVNKPAEQSLCPSALFEEIRRGKMTVGGKDLE 447

Query: 96  VLTSPLEEVGCSKA 110
             +S  +E  C KA
Sbjct: 448 SHSS--KEGVCPKA 459

The following BLAST results are available for this feature:
BLAST of Cla003559 vs. TrEMBL
Match NameE-valueIdentityDescription
E5GCB9_CUCME2.6e-0644.59Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
BLAST of Cla003559 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|307136292|gb|ADN34118.1|3.8e-0644.59hypothetical protein [Cucumis melo subsp. melo][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cla003559Cla003559gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cla003559Cla003559.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cla003559.1.cds1Cla003559.1.cds1CDS
Cla003559.1.cds2Cla003559.1.cds2CDS