Cla003559 (gene) Watermelon (97103) v1

Overview
NameCla003559
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr1 : 14474436 .. 14474852 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAGGATCCTGTGATAATAATTTTTTTGAAGGGATCCCAAGTGCTTCAGGACTCCCTAGTGCTGTCATACCATTGGTATGTATGCTCTCTGTTCAAGTTATCTTTGTTCTTTTCTTTACCAGGTAATTTATTTATTTATTATTTTTTTTGTAGTCTCCCTTGAGTCCGCACCTTCAAGAGCTTGCGGAGCCGAACAGTGAAGAATCTTTGATGGGGTCTTATAATTTGGATTCATCCATGGACAAGGTTGGTACTTCTACATTACCAATAGCTGAAACAATTGAACCACCCTTGCGACCTCGAGCTATTTTAGAGGACATTCGACGCGGCAAAATGAAAGTAGGTAGTGAGAGCGTTGGAGTTTTAACCTCTCCACTTGAAGAAGTTGGTTGTTCTAAAGCCCTCTTCATATAG

mRNA sequence

ATGAAAGGATCCTGTGATAATAATTTTTTTGAAGGGATCCCAAGTGCTTCAGGACTCCCTAGTGCTGTCATACCATTGTCTCCCTTGAGTCCGCACCTTCAAGAGCTTGCGGAGCCGAACAGTGAAGAATCTTTGATGGGGTCTTATAATTTGGATTCATCCATGGACAAGGTTGGTACTTCTACATTACCAATAGCTGAAACAATTGAACCACCCTTGCGACCTCGAGCTATTTTAGAGGACATTCGACGCGGCAAAATGAAAGTAGGTAGTGAGAGCGTTGGAGTTTTAACCTCTCCACTTGAAGAAGTTGGTTGTTCTAAAGCCCTCTTCATATAG

Coding sequence (CDS)

ATGAAAGGATCCTGTGATAATAATTTTTTTGAAGGGATCCCAAGTGCTTCAGGACTCCCTAGTGCTGTCATACCATTGTCTCCCTTGAGTCCGCACCTTCAAGAGCTTGCGGAGCCGAACAGTGAAGAATCTTTGATGGGGTCTTATAATTTGGATTCATCCATGGACAAGGTTGGTACTTCTACATTACCAATAGCTGAAACAATTGAACCACCCTTGCGACCTCGAGCTATTTTAGAGGACATTCGACGCGGCAAAATGAAAGTAGGTAGTGAGAGCGTTGGAGTTTTAACCTCTCCACTTGAAGAAGTTGGTTGTTCTAAAGCCCTCTTCATATAG

Protein sequence

MKGSCDNNFFEGIPSASGLPSAVIPLSPLSPHLQELAEPNSEESLMGSYNLDSSMDKVGTSTLPIAETIEPPLRPRAILEDIRRGKMKVGSESVGVLTSPLEEVGCSKALFI
Homology
[Close]
BLAST of Cla003559 vs. TrEMBL
Match: E5GCB9_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.6e-06
Identity = 33/74 (44.59%), Postives = 48/74 (64.86%), Query Frame = 1 

Query: 36  LAEPNSEESLMGSYNLDSSMDKVGTSTLPIAETIEPPLRPRAILEDIRRGKMKVGSESVG 95
           L EP+S+ESL G + +DS+ ++VGTS  P+ +  E  L P A+ E+IRRGKM VG + + 
Sbjct: 388 LIEPDSDESLTGPHVVDSAFEEVGTSKTPVNKPAEQSLCPSALFEEIRRGKMTVGGKDLE 447

Query: 96  VLTSPLEEVGCSKA 110
             +S  +E  C KA
Sbjct: 448 SHSS--KEGVCPKA 459

[Close]
BLAST of Cla003559 vs. NCBI nr
Match: gi|307136292|gb|ADN34118.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 59.7 bits (143), Expect = 3.8e-06
Identity = 33/74 (44.59%), Postives = 48/74 (64.86%), Query Frame = 1 

Query: 36  LAEPNSEESLMGSYNLDSSMDKVGTSTLPIAETIEPPLRPRAILEDIRRGKMKVGSESVG 95
           L EP+S+ESL G + +DS+ ++VGTS  P+ +  E  L P A+ E+IRRGKM VG + + 
Sbjct: 388 LIEPDSDESLTGPHVVDSAFEEVGTSKTPVNKPAEQSLCPSALFEEIRRGKMTVGGKDLE 447

Query: 96  VLTSPLEEVGCSKA 110
             +S  +E  C KA
Sbjct: 448 SHSS--KEGVCPKA 459

The following BLAST results are available for this feature:
BLAST of Cla003559 vs. TrEMBL
Match NameE-valueIdentityDescription
E5GCB9_CUCME2.6e-0644.59Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
BLAST of Cla003559 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|307136292|gb|ADN34118.1|3.8e-0644.59hypothetical protein [Cucumis melo subsp. melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla003559Cla003559.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla003559Cucurbita pepo (Zucchini)cpewmB518
Cla003559Bottle gourd (USVL1VR-Ls)lsiwmB260
Cla003559Cucumber (Gy14) v2cgybwmB043
Cla003559Melon (DHL92) v3.6.1medwmB155
Cla003559Cucumber (Chinese Long) v3cucwmB049
Cla003559Watermelon (97103) v2wmwmbB250
Cla003559Wax gourdwgowmB510
Cla003559Cucumber (Gy14) v1cgywmB392
Cla003559Cucurbita maxima (Rimu)cmawmB168
Cla003559Cucurbita maxima (Rimu)cmawmB199
Cla003559Cucurbita moschata (Rifu)cmowmB154
Cla003559Cucurbita moschata (Rifu)cmowmB186
Cla003559Melon (DHL92) v3.5.1mewmB159
Cla003559Watermelon (Charleston Gray)wcgwmB158
Cla003559Cucumber (Chinese Long) v2cuwmB042