Cla003359.1 (mRNA) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla003359
Type	mRNA
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr11 : 7470729 .. 7471162 (-)
Sequence length	342

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCCAAGTGAAGCTTGGAGGAATCAGTGGTGAAGGCACTAGTGGTGCTACGCTTAGAGGGTTAGGAAGACCAAAGCAGCAGAGTAAAGTATATGTTATGACTCAGAAGGAGGCAGAGGATGCTCCTGATGTTATCACGAGTACGATATTTATATGTGTTATGCCTATTCAAGTATTGATAGATCTAGGGGGTACGATATTTATATGTGGATAAGTGTTTGATCTATCATAGGAATGCAAATGAGGCTGGTGGGATGGAAAATCACGCCCATGGGCATGCTGAGGGCGTGGGGCGCCCAGGATGGGCAACAACTCATGCCTATGGGCGTGTCAGCTGGGTGGTGTGGGGTGGCAGTAGTTCTTGAAATTTTGAGATTTTCAACGCAACTTCAAACTACTCATTCTCACTCCATTCTTAACCAAATTAAGTGA

mRNA sequence

ATGAGCCAAGTGAAGCTTGGAGGAATCAGTGGTGAAGGCACTAGTGGTGCTACGCTTAGAGGGTTAGGAAGACCAAAGCAGCAGAGTAAAGTATATGTTATGACTCAGAAGGAGGCAGAGGATGCTCCTGATGTTATCACGAGAATGCAAATGAGGCTGGTGGGATGGAAAATCACGCCCATGGGCATGCTGAGGGCGTGGGGCGCCCAGGATGGGCAACAACTCATGCCTATGGGCGTGTCAGCTGGGTGGTGTGGGGTGGCAGTAGTTCTTGAAATTTTGAGATTTTCAACGCAACTTCAAACTACTCATTCTCACTCCATTCTTAACCAAATTAAGTGA

Coding sequence (CDS)

ATGAGCCAAGTGAAGCTTGGAGGAATCAGTGGTGAAGGCACTAGTGGTGCTACGCTTAGAGGGTTAGGAAGACCAAAGCAGCAGAGTAAAGTATATGTTATGACTCAGAAGGAGGCAGAGGATGCTCCTGATGTTATCACGAGAATGCAAATGAGGCTGGTGGGATGGAAAATCACGCCCATGGGCATGCTGAGGGCGTGGGGCGCCCAGGATGGGCAACAACTCATGCCTATGGGCGTGTCAGCTGGGTGGTGTGGGGTGGCAGTAGTTCTTGAAATTTTGAGATTTTCAACGCAACTTCAAACTACTCATTCTCACTCCATTCTTAACCAAATTAAGTGA

Protein sequence

MSQVKLGGISGEGTSGATLRGLGRPKQQSKVYVMTQKEAEDAPDVITRMQMRLVGWKITPMGMLRAWGAQDGQQLMPMGVSAGWCGVAVVLEILRFSTQLQTTHSHSILNQIK

Homology

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BLAST of Cla003359 vs. NCBI nr
Match: gi|659127634|ref|XP_008463805.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103501860 [Cucumis melo])

HSP 1 Score: 59.7 bits (143), Expect = 3.8e-06
Identity = 29/48 (60.42%), Postives = 38/48 (79.17%), Query Frame = 1


Query: 1   MSQVKLGGISGEGTSGATLRG-LGRPKQQSKVYVMTQKEAEDAPDVIT 48
           + Q+++   +GEGTSGA  +G +GRP+QQ KVY MTQ+EAEDA DVIT
Sbjct: 94  VEQLRISTAAGEGTSGARQKGFVGRPRQQGKVYAMTQQEAEDAQDVIT 141

The following BLAST results are available for this feature:

BLAST of Cla003359 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659127634\|ref\|XP_008463805.1\|	3.8e-06	60.42	PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103501860 [Cucumis me...	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cla003359	Cla003359	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cla003359	Cla003359.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cla003359.1.cds2	Cla003359.1.cds2	CDS
Cla003359.1.cds1	Cla003359.1.cds1	CDS