Cla003359 (gene) Watermelon (97103) v1

Overview
NameCla003359
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr11 : 7470729 .. 7471162 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGCCAAGTGAAGCTTGGAGGAATCAGTGGTGAAGGCACTAGTGGTGCTACGCTTAGAGGGTTAGGAAGACCAAAGCAGCAGAGTAAAGTATATGTTATGACTCAGAAGGAGGCAGAGGATGCTCCTGATGTTATCACGAGTACGATATTTATATGTGTTATGCCTATTCAAGTATTGATAGATCTAGGGGGTACGATATTTATATGTGGATAAGTGTTTGATCTATCATAGGAATGCAAATGAGGCTGGTGGGATGGAAAATCACGCCCATGGGCATGCTGAGGGCGTGGGGCGCCCAGGATGGGCAACAACTCATGCCTATGGGCGTGTCAGCTGGGTGGTGTGGGGTGGCAGTAGTTCTTGAAATTTTGAGATTTTCAACGCAACTTCAAACTACTCATTCTCACTCCATTCTTAACCAAATTAAGTGA

mRNA sequence

ATGAGCCAAGTGAAGCTTGGAGGAATCAGTGGTGAAGGCACTAGTGGTGCTACGCTTAGAGGGTTAGGAAGACCAAAGCAGCAGAGTAAAGTATATGTTATGACTCAGAAGGAGGCAGAGGATGCTCCTGATGTTATCACGAGAATGCAAATGAGGCTGGTGGGATGGAAAATCACGCCCATGGGCATGCTGAGGGCGTGGGGCGCCCAGGATGGGCAACAACTCATGCCTATGGGCGTGTCAGCTGGGTGGTGTGGGGTGGCAGTAGTTCTTGAAATTTTGAGATTTTCAACGCAACTTCAAACTACTCATTCTCACTCCATTCTTAACCAAATTAAGTGA

Coding sequence (CDS)

ATGAGCCAAGTGAAGCTTGGAGGAATCAGTGGTGAAGGCACTAGTGGTGCTACGCTTAGAGGGTTAGGAAGACCAAAGCAGCAGAGTAAAGTATATGTTATGACTCAGAAGGAGGCAGAGGATGCTCCTGATGTTATCACGAGAATGCAAATGAGGCTGGTGGGATGGAAAATCACGCCCATGGGCATGCTGAGGGCGTGGGGCGCCCAGGATGGGCAACAACTCATGCCTATGGGCGTGTCAGCTGGGTGGTGTGGGGTGGCAGTAGTTCTTGAAATTTTGAGATTTTCAACGCAACTTCAAACTACTCATTCTCACTCCATTCTTAACCAAATTAAGTGA

Protein sequence

MSQVKLGGISGEGTSGATLRGLGRPKQQSKVYVMTQKEAEDAPDVITRMQMRLVGWKITPMGMLRAWGAQDGQQLMPMGVSAGWCGVAVVLEILRFSTQLQTTHSHSILNQIK
Homology
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BLAST of Cla003359 vs. NCBI nr
Match: gi|659127634|ref|XP_008463805.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103501860 [Cucumis melo])

HSP 1 Score: 59.7 bits (143), Expect = 3.8e-06
Identity = 29/48 (60.42%), Postives = 38/48 (79.17%), Query Frame = 1 

Query: 1   MSQVKLGGISGEGTSGATLRG-LGRPKQQSKVYVMTQKEAEDAPDVIT 48
           + Q+++   +GEGTSGA  +G +GRP+QQ KVY MTQ+EAEDA DVIT
Sbjct: 94  VEQLRISTAAGEGTSGARQKGFVGRPRQQGKVYAMTQQEAEDAQDVIT 141

The following BLAST results are available for this feature:
BLAST of Cla003359 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659127634|ref|XP_008463805.1|3.8e-0660.42PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103501860 [Cucumis me... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla003359Cla003359.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla003359ClCG11G009330Watermelon (Charleston Gray)wcgwmB105
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla003359Cucumber (Chinese Long) v3cucwmB169
Cla003359Watermelon (97103) v2wmwmbB365
Cla003359Wax gourdwgowmB151
Cla003359Cucurbita maxima (Rimu)cmawmB771
Cla003359Cucurbita moschata (Rifu)cmowmB762
Cla003359Wild cucumber (PI 183967)cpiwmB160
Cla003359Melon (DHL92) v3.5.1mewmB427
Cla003359Cucumber (Chinese Long) v2cuwmB158
Cla003359Bottle gourd (USVL1VR-Ls)lsiwmB113
Cla003359Cucumber (Gy14) v2cgybwmB150
Cla003359Melon (DHL92) v3.6.1medwmB417