Cla002377.1 (mRNA) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla002377
Type	mRNA
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr9 : 25374350 .. 25375313 (+)
Sequence length	405

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCACACTCAGGTAAGACCATATATCTTTTATTAAAAAATAAATACTGCGAAATTTGGTTCTACTTATTAACTTTTTTCAATTTTAGATCAATTGGATGCCGTACACACAAGAAATCATCGCATCGTTGCCTGATTGCTGCTATAATGGTGAAGACATCTGGTTGACGGTGAGTCGTCTAATATGCTTTCATATTGTAGAGTGGCATTACCCAAACCGAGTGTTAAGACAATTTGGCTTGCGATAAATGGTGCCACCAATTTGTTATACATACCGTGACATGCATCAAATTGATTTAAGGGATAAGCATGACCAAGATTGGCGACAAATTCATACAAACCATTTATCCCATTGGCGAGCACGTCGTGACCATTGCGTAGGAGGTGACGTAGTAGATAGACCAGTTGTGTCAGAAGTCATCTACCTTGGTACAACTCAATCATAAGACGATATATCACACCAGAGGGCGTTTATTATTATTGCATGGTAAGAATTTTATTATTTATTTTATTCAATTTTTTTGTTTCCATATTATTTTAGATTGTTTATCTTTTTTCTTTTGTCCATACAGAATAATTTTGTACAAGATGTACAACAATATTCAGTGCAACATAATTTACCAGAGCTAAGTTCGATGTGTGATCAATGTGTTGTAAATGTCGAAGATATCGTAATTCAACAGACACGTAAACTTAATGTTGCCGACACTGATAGAAGACGCGTTCGTCGTCGACGTCAACAACAACAGGCCGAGAATATTCCAGAGCAACAGATTGACCCAAAACCTCAAGGAGATATTGCATCGAGTTCTGGTCATCAAAATGAGTATTATGCACCTGATGTATTTCCATCTATTGTCACCCAAGAAGACATCGATGATGTAATTCATCATCAAGAAAACTATGAGATTCCTGTACCTTGTCGTGGCCTACGTGAGAGAAGATGTCCACCGTGTGGCACATGA

mRNA sequence

ATGCACACTCAGAATAATTTTGTACAAGATGTACAACAATATTCAGTGCAACATAATTTACCAGAGCTAAGTTCGATGTGTGATCAATGTGTTGTAAATGTCGAAGATATCGTAATTCAACAGACACGTAAACTTAATGTTGCCGACACTGATAGAAGACGCGTTCGTCGTCGACGTCAACAACAACAGGCCGAGAATATTCCAGAGCAACAGATTGACCCAAAACCTCAAGGAGATATTGCATCGAGTTCTGGTCATCAAAATGAGTATTATGCACCTGATGTATTTCCATCTATTGTCACCCAAGAAGACATCGATGATGTAATTCATCATCAAGAAAACTATGAGATTCCTGTACCTTGTCGTGGCCTACGTGAGAGAAGATGTCCACCGTGTGGCACATGA

Coding sequence (CDS)

ATGCACACTCAGAATAATTTTGTACAAGATGTACAACAATATTCAGTGCAACATAATTTACCAGAGCTAAGTTCGATGTGTGATCAATGTGTTGTAAATGTCGAAGATATCGTAATTCAACAGACACGTAAACTTAATGTTGCCGACACTGATAGAAGACGCGTTCGTCGTCGACGTCAACAACAACAGGCCGAGAATATTCCAGAGCAACAGATTGACCCAAAACCTCAAGGAGATATTGCATCGAGTTCTGGTCATCAAAATGAGTATTATGCACCTGATGTATTTCCATCTATTGTCACCCAAGAAGACATCGATGATGTAATTCATCATCAAGAAAACTATGAGATTCCTGTACCTTGTCGTGGCCTACGTGAGAGAAGATGTCCACCGTGTGGCACATGA

Protein sequence

MHTQNNFVQDVQQYSVQHNLPELSSMCDQCVVNVEDIVIQQTRKLNVADTDRRRVRRRRQQQQAENIPEQQIDPKPQGDIASSSGHQNEYYAPDVFPSIVTQEDIDDVIHHQENYEIPVPCRGLRERRCPPCGT

Homology

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BLAST of Cla002377 vs. NCBI nr
Match: gi|659119282|ref|XP_008459571.1| (PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Cucumis melo])

HSP 1 Score: 80.5 bits (197), Expect = 2.5e-12
Identity = 38/58 (65.52%), Postives = 50/58 (86.21%), Query Frame = 1


Query: 5   NNFVQDVQQYSVQHNLPELSSMCDQCVVNVEDIVIQQTRKLNVADTDRRRVRRRRQQQ 63
           NNFVQDV+ YS++HNL +L SMCDQ + N+E I IQQT++LNVADTDRR +RR+R++Q
Sbjct: 430 NNFVQDVRAYSMEHNLQDLGSMCDQFLENIEHI-IQQTKRLNVADTDRRCIRRKRRRQ 486

The following BLAST results are available for this feature:

BLAST of Cla002377 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659119282\|ref\|XP_008459571.1\|	2.5e-12	65.52	PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Cucumis mel...	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cla002377	Cla002377	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cla002377	Cla002377.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cla002377.1.cds1	Cla002377.1.cds1	CDS
Cla002377.1.cds2	Cla002377.1.cds2	CDS