Cla002377 (gene) Watermelon (97103) v1

Overview
NameCla002377
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr9 : 25374350 .. 25375313 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCACACTCAGGTAAGACCATATATCTTTTATTAAAAAATAAATACTGCGAAATTTGGTTCTACTTATTAACTTTTTTCAATTTTAGATCAATTGGATGCCGTACACACAAGAAATCATCGCATCGTTGCCTGATTGCTGCTATAATGGTGAAGACATCTGGTTGACGGTGAGTCGTCTAATATGCTTTCATATTGTAGAGTGGCATTACCCAAACCGAGTGTTAAGACAATTTGGCTTGCGATAAATGGTGCCACCAATTTGTTATACATACCGTGACATGCATCAAATTGATTTAAGGGATAAGCATGACCAAGATTGGCGACAAATTCATACAAACCATTTATCCCATTGGCGAGCACGTCGTGACCATTGCGTAGGAGGTGACGTAGTAGATAGACCAGTTGTGTCAGAAGTCATCTACCTTGGTACAACTCAATCATAAGACGATATATCACACCAGAGGGCGTTTATTATTATTGCATGGTAAGAATTTTATTATTTATTTTATTCAATTTTTTTGTTTCCATATTATTTTAGATTGTTTATCTTTTTTCTTTTGTCCATACAGAATAATTTTGTACAAGATGTACAACAATATTCAGTGCAACATAATTTACCAGAGCTAAGTTCGATGTGTGATCAATGTGTTGTAAATGTCGAAGATATCGTAATTCAACAGACACGTAAACTTAATGTTGCCGACACTGATAGAAGACGCGTTCGTCGTCGACGTCAACAACAACAGGCCGAGAATATTCCAGAGCAACAGATTGACCCAAAACCTCAAGGAGATATTGCATCGAGTTCTGGTCATCAAAATGAGTATTATGCACCTGATGTATTTCCATCTATTGTCACCCAAGAAGACATCGATGATGTAATTCATCATCAAGAAAACTATGAGATTCCTGTACCTTGTCGTGGCCTACGTGAGAGAAGATGTCCACCGTGTGGCACATGA

mRNA sequence

ATGCACACTCAGAATAATTTTGTACAAGATGTACAACAATATTCAGTGCAACATAATTTACCAGAGCTAAGTTCGATGTGTGATCAATGTGTTGTAAATGTCGAAGATATCGTAATTCAACAGACACGTAAACTTAATGTTGCCGACACTGATAGAAGACGCGTTCGTCGTCGACGTCAACAACAACAGGCCGAGAATATTCCAGAGCAACAGATTGACCCAAAACCTCAAGGAGATATTGCATCGAGTTCTGGTCATCAAAATGAGTATTATGCACCTGATGTATTTCCATCTATTGTCACCCAAGAAGACATCGATGATGTAATTCATCATCAAGAAAACTATGAGATTCCTGTACCTTGTCGTGGCCTACGTGAGAGAAGATGTCCACCGTGTGGCACATGA

Coding sequence (CDS)

ATGCACACTCAGAATAATTTTGTACAAGATGTACAACAATATTCAGTGCAACATAATTTACCAGAGCTAAGTTCGATGTGTGATCAATGTGTTGTAAATGTCGAAGATATCGTAATTCAACAGACACGTAAACTTAATGTTGCCGACACTGATAGAAGACGCGTTCGTCGTCGACGTCAACAACAACAGGCCGAGAATATTCCAGAGCAACAGATTGACCCAAAACCTCAAGGAGATATTGCATCGAGTTCTGGTCATCAAAATGAGTATTATGCACCTGATGTATTTCCATCTATTGTCACCCAAGAAGACATCGATGATGTAATTCATCATCAAGAAAACTATGAGATTCCTGTACCTTGTCGTGGCCTACGTGAGAGAAGATGTCCACCGTGTGGCACATGA

Protein sequence

MHTQNNFVQDVQQYSVQHNLPELSSMCDQCVVNVEDIVIQQTRKLNVADTDRRRVRRRRQQQQAENIPEQQIDPKPQGDIASSSGHQNEYYAPDVFPSIVTQEDIDDVIHHQENYEIPVPCRGLRERRCPPCGT
Homology
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BLAST of Cla002377 vs. NCBI nr
Match: gi|659119282|ref|XP_008459571.1| (PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Cucumis melo])

HSP 1 Score: 80.5 bits (197), Expect = 2.5e-12
Identity = 38/58 (65.52%), Postives = 50/58 (86.21%), Query Frame = 1 

Query: 5   NNFVQDVQQYSVQHNLPELSSMCDQCVVNVEDIVIQQTRKLNVADTDRRRVRRRRQQQ 63
           NNFVQDV+ YS++HNL +L SMCDQ + N+E I IQQT++LNVADTDRR +RR+R++Q
Sbjct: 430 NNFVQDVRAYSMEHNLQDLGSMCDQFLENIEHI-IQQTKRLNVADTDRRCIRRKRRRQ 486

The following BLAST results are available for this feature:
BLAST of Cla002377 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659119282|ref|XP_008459571.1|2.5e-1265.52PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Cucumis mel... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla002377Cla002377.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla002377Watermelon (97103) v2wmwmbB045
Cla002377Wax gourdwgowmB246
Cla002377Cucurbita maxima (Rimu)cmawmB080
Cla002377Watermelon (Charleston Gray)wcgwmB012
Cla002377Bottle gourd (USVL1VR-Ls)lsiwmB229
Cla002377Bottle gourd (USVL1VR-Ls)lsiwmB239