Cla001952.1 (mRNA) Watermelon (97103) v1

Overview
NameCla001952
TypemRNA
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr7 : 13686022 .. 13686318 (+)
Sequence length297
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTTCTCAAAAGGAGTTGGAACAAGAAGACACTGAGACGGCCAATTATGTTGATAGAGGACACTATAGAGGCCACCAACAACAACAACAACTTCCAACTCATTACCATCCTAACTTGAGGAACCATGAAAACTTTTTTTATGCTAACAATAGGAATGTTTTGCAAGGTCCTCCCGGTTTTTCCAATGTAGCTCTATCACACACCAAAAAGAAGTCCAACTTAGAATACTTGATGGTGGAGTTCATAAAGGAGTCAAGAGGAAGGACCACCGCATTGAAGAGTGATAGCACCTAA

mRNA sequence

ATGTCTTCTCAAAAGGAGTTGGAACAAGAAGACACTGAGACGGCCAATTATGTTGATAGAGGACACTATAGAGGCCACCAACAACAACAACAACTTCCAACTCATTACCATCCTAACTTGAGGAACCATGAAAACTTTTTTTATGCTAACAATAGGAATGTTTTGCAAGGTCCTCCCGGTTTTTCCAATGTAGCTCTATCACACACCAAAAAGAAGTCCAACTTAGAATACTTGATGGTGGAGTTCATAAAGGAGTCAAGAGGAAGGACCACCGCATTGAAGAGTGATAGCACCTAA

Coding sequence (CDS)

ATGTCTTCTCAAAAGGAGTTGGAACAAGAAGACACTGAGACGGCCAATTATGTTGATAGAGGACACTATAGAGGCCACCAACAACAACAACAACTTCCAACTCATTACCATCCTAACTTGAGGAACCATGAAAACTTTTTTTATGCTAACAATAGGAATGTTTTGCAAGGTCCTCCCGGTTTTTCCAATGTAGCTCTATCACACACCAAAAAGAAGTCCAACTTAGAATACTTGATGGTGGAGTTCATAAAGGAGTCAAGAGGAAGGACCACCGCATTGAAGAGTGATAGCACCTAA

Protein sequence

MSSQKELEQEDTETANYVDRGHYRGHQQQQQLPTHYHPNLRNHENFFYANNRNVLQGPPGFSNVALSHTKKKSNLEYLMVEFIKESRGRTTALKSDST
Homology
[Close]
BLAST of Cla001952 vs. NCBI nr
Match: gi|848865087|ref|XP_012833261.1| (PREDICTED: uncharacterized protein LOC105954132 [Erythranthe guttata])

HSP 1 Score: 67.4 bits (163), Expect = 1.6e-08
Identity = 30/64 (46.88%), Postives = 42/64 (65.62%), Query Frame = 1 

Query: 2   SSQKELEQEDTETANYVDR--GHYRGHQQQQQLPTHYHPNLRNHENFFYANNRNVLQGPP 61
           SS  +   +D E A++++    ++RG   Q Q PTHYHP +RNHENF YAN +N LQ PP
Sbjct: 271 SSTSQATNDDWEQAHFMNHRFNNFRGTNNQNQNPTHYHPGIRNHENFSYANPKNALQPPP 330

Query: 62  GFSN 64
            F++
Sbjct: 331 DFNH 334

[Close]
BLAST of Cla001952 vs. NCBI nr
Match: gi|848861027|ref|XP_012831341.1| (PREDICTED: uncharacterized protein LOC105952343 [Erythranthe guttata])

HSP 1 Score: 66.2 bits (160), Expect = 3.5e-08
Identity = 29/64 (45.31%), Postives = 42/64 (65.62%), Query Frame = 1 

Query: 2   SSQKELEQEDTETANYVDR--GHYRGHQQQQQLPTHYHPNLRNHENFFYANNRNVLQGPP 61
           +S  +   +D E A++++    ++RG   Q Q PTHYHP +RNHENF YAN +N LQ PP
Sbjct: 290 ASTSQATNDDWEQAHFMNHRFNNFRGTHNQNQNPTHYHPGIRNHENFSYANPKNALQPPP 349

Query: 62  GFSN 64
            F++
Sbjct: 350 DFNH 353

[Close]
BLAST of Cla001952 vs. NCBI nr
Match: gi|848888016|ref|XP_012844225.1| (PREDICTED: uncharacterized protein LOC105964250 [Erythranthe guttata])

HSP 1 Score: 66.2 bits (160), Expect = 3.5e-08
Identity = 29/64 (45.31%), Postives = 42/64 (65.62%), Query Frame = 1 

Query: 2   SSQKELEQEDTETANYVDR--GHYRGHQQQQQLPTHYHPNLRNHENFFYANNRNVLQGPP 61
           +S  +   +D E A++++    ++RG   Q Q PTHYHP +RNHENF YAN +N LQ PP
Sbjct: 290 ASTSQATNDDWEQAHFMNHRFNNFRGTHNQNQNPTHYHPGIRNHENFSYANPKNALQPPP 349

Query: 62  GFSN 64
            F++
Sbjct: 350 DFNH 353

[Close]
BLAST of Cla001952 vs. NCBI nr
Match: gi|848887961|ref|XP_012844200.1| (PREDICTED: uncharacterized protein LOC105964217 [Erythranthe guttata])

HSP 1 Score: 66.2 bits (160), Expect = 3.5e-08
Identity = 29/64 (45.31%), Postives = 42/64 (65.62%), Query Frame = 1 

Query: 2   SSQKELEQEDTETANYVDR--GHYRGHQQQQQLPTHYHPNLRNHENFFYANNRNVLQGPP 61
           +S  +   +D E A++++    ++RG   Q Q PTHYHP +RNHENF YAN +N LQ PP
Sbjct: 290 ASTSQATNDDWEQAHFMNHRFNNFRGTNNQNQNPTHYHPGIRNHENFSYANPKNALQPPP 349

Query: 62  GFSN 64
            F++
Sbjct: 350 DFNH 353

[Close]
BLAST of Cla001952 vs. NCBI nr
Match: gi|848884999|ref|XP_012842755.1| (PREDICTED: uncharacterized protein LOC105962957 [Erythranthe guttata])

HSP 1 Score: 66.2 bits (160), Expect = 3.5e-08
Identity = 29/64 (45.31%), Postives = 42/64 (65.62%), Query Frame = 1 

Query: 2   SSQKELEQEDTETANYVDR--GHYRGHQQQQQLPTHYHPNLRNHENFFYANNRNVLQGPP 61
           +S  +   +D E A++++    ++RG   Q Q PTHYHP +RNHENF YAN +N LQ PP
Sbjct: 290 ASTSQATNDDWEQAHFMNHRFNNFRGTHNQNQNPTHYHPGIRNHENFSYANPKNALQPPP 349

Query: 62  GFSN 64
            F++
Sbjct: 350 DFNH 353

The following BLAST results are available for this feature:
BLAST of Cla001952 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|848865087|ref|XP_012833261.1|1.6e-0846.88PREDICTED: uncharacterized protein LOC105954132 [Erythranthe guttata][more]
gi|848861027|ref|XP_012831341.1|3.5e-0845.31PREDICTED: uncharacterized protein LOC105952343 [Erythranthe guttata][more]
gi|848888016|ref|XP_012844225.1|3.5e-0845.31PREDICTED: uncharacterized protein LOC105964250 [Erythranthe guttata][more]
gi|848887961|ref|XP_012844200.1|3.5e-0845.31PREDICTED: uncharacterized protein LOC105964217 [Erythranthe guttata][more]
gi|848884999|ref|XP_012842755.1|3.5e-0845.31PREDICTED: uncharacterized protein LOC105962957 [Erythranthe guttata][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cla001952Cla001952gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cla001952Cla001952.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cla001952.1.cds1Cla001952.1.cds1CDS