Cla001952 (gene) Watermelon (97103) v1

Overview
NameCla001952
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr7 : 13686022 .. 13686318 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTTCTCAAAAGGAGTTGGAACAAGAAGACACTGAGACGGCCAATTATGTTGATAGAGGACACTATAGAGGCCACCAACAACAACAACAACTTCCAACTCATTACCATCCTAACTTGAGGAACCATGAAAACTTTTTTTATGCTAACAATAGGAATGTTTTGCAAGGTCCTCCCGGTTTTTCCAATGTAGCTCTATCACACACCAAAAAGAAGTCCAACTTAGAATACTTGATGGTGGAGTTCATAAAGGAGTCAAGAGGAAGGACCACCGCATTGAAGAGTGATAGCACCTAA

mRNA sequence

ATGTCTTCTCAAAAGGAGTTGGAACAAGAAGACACTGAGACGGCCAATTATGTTGATAGAGGACACTATAGAGGCCACCAACAACAACAACAACTTCCAACTCATTACCATCCTAACTTGAGGAACCATGAAAACTTTTTTTATGCTAACAATAGGAATGTTTTGCAAGGTCCTCCCGGTTTTTCCAATGTAGCTCTATCACACACCAAAAAGAAGTCCAACTTAGAATACTTGATGGTGGAGTTCATAAAGGAGTCAAGAGGAAGGACCACCGCATTGAAGAGTGATAGCACCTAA

Coding sequence (CDS)

ATGTCTTCTCAAAAGGAGTTGGAACAAGAAGACACTGAGACGGCCAATTATGTTGATAGAGGACACTATAGAGGCCACCAACAACAACAACAACTTCCAACTCATTACCATCCTAACTTGAGGAACCATGAAAACTTTTTTTATGCTAACAATAGGAATGTTTTGCAAGGTCCTCCCGGTTTTTCCAATGTAGCTCTATCACACACCAAAAAGAAGTCCAACTTAGAATACTTGATGGTGGAGTTCATAAAGGAGTCAAGAGGAAGGACCACCGCATTGAAGAGTGATAGCACCTAA

Protein sequence

MSSQKELEQEDTETANYVDRGHYRGHQQQQQLPTHYHPNLRNHENFFYANNRNVLQGPPGFSNVALSHTKKKSNLEYLMVEFIKESRGRTTALKSDST
Homology
[Close]
BLAST of Cla001952 vs. NCBI nr
Match: gi|848865087|ref|XP_012833261.1| (PREDICTED: uncharacterized protein LOC105954132 [Erythranthe guttata])

HSP 1 Score: 67.4 bits (163), Expect = 1.6e-08
Identity = 30/64 (46.88%), Postives = 42/64 (65.62%), Query Frame = 1 

Query: 2   SSQKELEQEDTETANYVDR--GHYRGHQQQQQLPTHYHPNLRNHENFFYANNRNVLQGPP 61
           SS  +   +D E A++++    ++RG   Q Q PTHYHP +RNHENF YAN +N LQ PP
Sbjct: 271 SSTSQATNDDWEQAHFMNHRFNNFRGTNNQNQNPTHYHPGIRNHENFSYANPKNALQPPP 330

Query: 62  GFSN 64
            F++
Sbjct: 331 DFNH 334

[Close]
BLAST of Cla001952 vs. NCBI nr
Match: gi|848861027|ref|XP_012831341.1| (PREDICTED: uncharacterized protein LOC105952343 [Erythranthe guttata])

HSP 1 Score: 66.2 bits (160), Expect = 3.5e-08
Identity = 29/64 (45.31%), Postives = 42/64 (65.62%), Query Frame = 1 

Query: 2   SSQKELEQEDTETANYVDR--GHYRGHQQQQQLPTHYHPNLRNHENFFYANNRNVLQGPP 61
           +S  +   +D E A++++    ++RG   Q Q PTHYHP +RNHENF YAN +N LQ PP
Sbjct: 290 ASTSQATNDDWEQAHFMNHRFNNFRGTHNQNQNPTHYHPGIRNHENFSYANPKNALQPPP 349

Query: 62  GFSN 64
            F++
Sbjct: 350 DFNH 353

[Close]
BLAST of Cla001952 vs. NCBI nr
Match: gi|848888016|ref|XP_012844225.1| (PREDICTED: uncharacterized protein LOC105964250 [Erythranthe guttata])

HSP 1 Score: 66.2 bits (160), Expect = 3.5e-08
Identity = 29/64 (45.31%), Postives = 42/64 (65.62%), Query Frame = 1 

Query: 2   SSQKELEQEDTETANYVDR--GHYRGHQQQQQLPTHYHPNLRNHENFFYANNRNVLQGPP 61
           +S  +   +D E A++++    ++RG   Q Q PTHYHP +RNHENF YAN +N LQ PP
Sbjct: 290 ASTSQATNDDWEQAHFMNHRFNNFRGTHNQNQNPTHYHPGIRNHENFSYANPKNALQPPP 349

Query: 62  GFSN 64
            F++
Sbjct: 350 DFNH 353

[Close]
BLAST of Cla001952 vs. NCBI nr
Match: gi|848887961|ref|XP_012844200.1| (PREDICTED: uncharacterized protein LOC105964217 [Erythranthe guttata])

HSP 1 Score: 66.2 bits (160), Expect = 3.5e-08
Identity = 29/64 (45.31%), Postives = 42/64 (65.62%), Query Frame = 1 

Query: 2   SSQKELEQEDTETANYVDR--GHYRGHQQQQQLPTHYHPNLRNHENFFYANNRNVLQGPP 61
           +S  +   +D E A++++    ++RG   Q Q PTHYHP +RNHENF YAN +N LQ PP
Sbjct: 290 ASTSQATNDDWEQAHFMNHRFNNFRGTNNQNQNPTHYHPGIRNHENFSYANPKNALQPPP 349

Query: 62  GFSN 64
            F++
Sbjct: 350 DFNH 353

[Close]
BLAST of Cla001952 vs. NCBI nr
Match: gi|848884999|ref|XP_012842755.1| (PREDICTED: uncharacterized protein LOC105962957 [Erythranthe guttata])

HSP 1 Score: 66.2 bits (160), Expect = 3.5e-08
Identity = 29/64 (45.31%), Postives = 42/64 (65.62%), Query Frame = 1 

Query: 2   SSQKELEQEDTETANYVDR--GHYRGHQQQQQLPTHYHPNLRNHENFFYANNRNVLQGPP 61
           +S  +   +D E A++++    ++RG   Q Q PTHYHP +RNHENF YAN +N LQ PP
Sbjct: 290 ASTSQATNDDWEQAHFMNHRFNNFRGTHNQNQNPTHYHPGIRNHENFSYANPKNALQPPP 349

Query: 62  GFSN 64
            F++
Sbjct: 350 DFNH 353

The following BLAST results are available for this feature:
BLAST of Cla001952 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|848865087|ref|XP_012833261.1|1.6e-0846.88PREDICTED: uncharacterized protein LOC105954132 [Erythranthe guttata][more]
gi|848861027|ref|XP_012831341.1|3.5e-0845.31PREDICTED: uncharacterized protein LOC105952343 [Erythranthe guttata][more]
gi|848888016|ref|XP_012844225.1|3.5e-0845.31PREDICTED: uncharacterized protein LOC105964250 [Erythranthe guttata][more]
gi|848887961|ref|XP_012844200.1|3.5e-0845.31PREDICTED: uncharacterized protein LOC105964217 [Erythranthe guttata][more]
gi|848884999|ref|XP_012842755.1|3.5e-0845.31PREDICTED: uncharacterized protein LOC105962957 [Erythranthe guttata][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla001952Cla001952.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla001952Watermelon (97103) v2wmwmbB172
Cla001952Watermelon (97103) v2wmwmbB181
Cla001952Wax gourdwgowmB547
Cla001952Cucurbita maxima (Rimu)cmawmB698
Cla001952Cucurbita moschata (Rifu)cmowmB692
Cla001952Melon (DHL92) v3.5.1mewmB054
Cla001952Watermelon (Charleston Gray)wcgwmB369
Cla001952Watermelon (Charleston Gray)wcgwmB381
Cla001952Cucumber (Chinese Long) v2cuwmB283
Cla001952Cucurbita pepo (Zucchini)cpewmB426
Cla001952Bottle gourd (USVL1VR-Ls)lsiwmB305
Cla001952Cucumber (Gy14) v2cgybwmB362
Cla001952Melon (DHL92) v3.6.1medwmB056
Cla001952Cucumber (Chinese Long) v3cucwmB414