Cla001437.1 (mRNA) Watermelon (97103) v1
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGTTATTTACTGCATCATGCGGGGAATTTGGCTAGATGTGGGACGCATCATTGCCCCACAGATTCGGGGGTTTTTTTTCAAGCCAAGGGGTCAGCTGTTCTTCCCCTTTCTTGTGACAAGACTGTGCGCCAACGCAGAATTCATGGAGGATGCGCCGGTCAGAGCAGTAAATAGAGTCCTTTCAGCCCAAAGTCTGAGATGGATATTAAAGGACTCACCGGATCTGCTTGAGGCGGCCAACTCAAAGAAGAGGCCGACCAAGTCACAAGAACCATCATCCCCCAACACACAAGCCTTGACCATTTATACTCCTCCCATCGACCCAATCACTGAGGAGCCCTCTTCACCACCAACTTCCCCTTCCCCTAAAATCCAAAAAGAACCACTTCATGTACCTATCACCCAACGCAGCCTCCCATCGCGTCTTCAGCTTCCTATCACAGACTTAAATGAAGAGTCGAAGGAAGTGTCGTCGCCTTCTTTGCCCCATCTGGAGTTAACCCTCTCCCTGCCTCAATCATTTACCTTTCGAGAGGCAACTCCATCCCCACCAGCACCACCCGTTGAGCCGACCCTGACTCTGGATCCGCCCTTTCAATTCTCACCGCCTCGCCATGAACCTCAATCTTCCAATCTTCCAACTCCACCAACTACTGAACCTTCTGCCCACCCAACTTCTCAACCGCAGGCAGAAGCAACTATAAGCACGCATCTTCAAGAAGAACCATATCACTTATGGCATGCCTCTGCTCTGTTTGATTTAAATTTGGATGATTTGCTACGGTACTTGGATGATGGGATCCTTCACCCCGTCATGGGAGACCTGGATGAAATTCGGCGCAAGGAGATGGAAAGTCTCCAGCGGCAAGAAGAGTTGGCTCAACAAGTTTCACAATTGGGTCAGCAAGTGACTTAG ATGGTTATTTACTGCATCATGCGGGGAATTTGGCTAGATGTGGGACGCATCATTGCCCCACAGATTCGGGGGTTTTTTTTCAAGCCAAGGGGTCAGCTGTTCTTCCCCTTTCTTGTGACAAGACTGTGCGCCAACGCAGAATTCATGGAGGATGCGCCGGTCAGAGCAGTAAATAGAGTCCTTTCAGCCCAAAGTCTGAGATGGATATTAAAGGACTCACCGGATCTGCTTGAGGCGGCCAACTCAAAGAAGAGGCCGACCAAGTCACAAGAACCATCATCCCCCAACACACAAGCCTTGACCATTTATACTCCTCCCATCGACCCAATCACTGAGGAGCCCTCTTCACCACCAACTTCCCCTTCCCCTAAAATCCAAAAAGAACCACTTCATGTACCTATCACCCAACGCAGCCTCCCATCGCGTCTTCAGCTTCCTATCACAGACTTAAATGAAGAGTCGAAGGAAGTGTCGTCGCCTTCTTTGCCCCATCTGGAGTTAACCCTCTCCCTGCCTCAATCATTTACCTTTCGAGAGGCAACTCCATCCCCACCAGCACCACCCGTTGAGCCGACCCTGACTCTGGATCCGCCCTTTCAATTCTCACCGCCTCGCCATGAACCTCAATCTTCCAATCTTCCAACTCCACCAACTACTGAACCTTCTGCCCACCCAACTTCTCAACCGCAGGCAGAAGCAACTATAAGCACGCATCTTCAAGAAGAACCATATCACTTATGGCATGCCTCTGCTCTGTTTGATTTAAATTTGGATGATTTGCTACGGTACTTGGATGATGGGATCCTTCACCCCGTCATGGGAGACCTGGATGAAATTCGGCGCAAGGAGATGGAAAGTCTCCAGCGGCAAGAAGAGTTGGCTCAACAAGTTTCACAATTGGGTCAGCAAGTGACTTAG ATGGTTATTTACTGCATCATGCGGGGAATTTGGCTAGATGTGGGACGCATCATTGCCCCACAGATTCGGGGGTTTTTTTTCAAGCCAAGGGGTCAGCTGTTCTTCCCCTTTCTTGTGACAAGACTGTGCGCCAACGCAGAATTCATGGAGGATGCGCCGGTCAGAGCAGTAAATAGAGTCCTTTCAGCCCAAAGTCTGAGATGGATATTAAAGGACTCACCGGATCTGCTTGAGGCGGCCAACTCAAAGAAGAGGCCGACCAAGTCACAAGAACCATCATCCCCCAACACACAAGCCTTGACCATTTATACTCCTCCCATCGACCCAATCACTGAGGAGCCCTCTTCACCACCAACTTCCCCTTCCCCTAAAATCCAAAAAGAACCACTTCATGTACCTATCACCCAACGCAGCCTCCCATCGCGTCTTCAGCTTCCTATCACAGACTTAAATGAAGAGTCGAAGGAAGTGTCGTCGCCTTCTTTGCCCCATCTGGAGTTAACCCTCTCCCTGCCTCAATCATTTACCTTTCGAGAGGCAACTCCATCCCCACCAGCACCACCCGTTGAGCCGACCCTGACTCTGGATCCGCCCTTTCAATTCTCACCGCCTCGCCATGAACCTCAATCTTCCAATCTTCCAACTCCACCAACTACTGAACCTTCTGCCCACCCAACTTCTCAACCGCAGGCAGAAGCAACTATAAGCACGCATCTTCAAGAAGAACCATATCACTTATGGCATGCCTCTGCTCTGTTTGATTTAAATTTGGATGATTTGCTACGGTACTTGGATGATGGGATCCTTCACCCCGTCATGGGAGACCTGGATGAAATTCGGCGCAAGGAGATGGAAAGTCTCCAGCGGCAAGAAGAGTTGGCTCAACAAGTTTCACAATTGGGTCAGCAAGTGACTTAG MVIYCIMRGIWLDVGRIIAPQIRGFFFKPRGQLFFPFLVTRLCANAEFMEDAPVRAVNRVLSAQSLRWILKDSPDLLEAANSKKRPTKSQEPSSPNTQALTIYTPPIDPITEEPSSPPTSPSPKIQKEPLHVPITQRSLPSRLQLPITDLNEESKEVSSPSLPHLELTLSLPQSFTFREATPSPPAPPVEPTLTLDPPFQFSPPRHEPQSSNLPTPPTTEPSAHPTSQPQAEATISTHLQEEPYHLWHASALFDLNLDDLLRYLDDGILHPVMGDLDEIRRKEMESLQRQEELAQQVSQLGQQVT
BLAST of Cla001437 vs. Swiss-Prot
Match: GP1BA_CANLF (Platelet glycoprotein Ib alpha chain OS=Canis lupus familiaris GN=GP1BA PE=2 SV=2) HSP 1 Score: 52.8 bits (125), Expect = 7.9e-06 Identity = 48/154 (31.17%), Postives = 59/154 (38.31%), Query Frame = 1
BLAST of Cla001437 vs. TrEMBL
Match: B9RZI2_RICCO (Protein binding protein, putative OS=Ricinus communis GN=RCOM_0939530 PE=4 SV=1) HSP 1 Score: 69.7 bits (169), Expect = 6.9e-09 Identity = 57/163 (34.97%), Postives = 68/163 (41.72%), Query Frame = 1
BLAST of Cla001437 vs. TrEMBL
Match: B9RZI2_RICCO (Protein binding protein, putative OS=Ricinus communis GN=RCOM_0939530 PE=4 SV=1) HSP 1 Score: 66.2 bits (160), Expect = 7.7e-08 Identity = 59/178 (33.15%), Postives = 73/178 (41.01%), Query Frame = 1
HSP 2 Score: 56.2 bits (134), Expect = 7.9e-05 Identity = 49/159 (30.82%), Postives = 64/159 (40.25%), Query Frame = 1
HSP 3 Score: 52.0 bits (123), Expect = 1.5e-03 Identity = 46/157 (29.30%), Postives = 69/157 (43.95%), Query Frame = 1
HSP 4 Score: 48.5 bits (114), Expect = 1.7e-02 Identity = 51/167 (30.54%), Postives = 67/167 (40.12%), Query Frame = 1
HSP 5 Score: 69.3 bits (168), Expect = 9.1e-09 Identity = 55/167 (32.93%), Postives = 75/167 (44.91%), Query Frame = 1
BLAST of Cla001437 vs. TrEMBL
Match: A0A0R3FHS7_9MYCO (Uncharacterized protein OS=Mycobacterium sp. H092 GN=AOT91_08475 PE=4 SV=1) HSP 1 Score: 68.2 bits (165), Expect = 2.0e-08 Identity = 54/167 (32.34%), Postives = 75/167 (44.91%), Query Frame = 1
BLAST of Cla001437 vs. TrEMBL
Match: A0A145TKP6_9MYCO (Uncharacterized protein OS=Mycobacterium sp. QIA-37 GN=Chelonae_p2719 PE=4 SV=1) HSP 1 Score: 65.9 bits (159), Expect = 1.0e-07 Identity = 55/178 (30.90%), Postives = 78/178 (43.82%), Query Frame = 1
BLAST of Cla001437 vs. TrEMBL
Match: W5QDK3_SHEEP (Uncharacterized protein (Fragment) OS=Ovis aries PE=4 SV=1) HSP 1 Score: 63.5 bits (153), Expect = 5.0e-07 Identity = 51/151 (33.77%), Postives = 70/151 (46.36%), Query Frame = 1
BLAST of Cla001437 vs. NCBI nr
Match: gi|255556233|ref|XP_002519151.1| (PREDICTED: pollen-specific leucine-rich repeat extensin-like protein 1 [Ricinus communis]) HSP 1 Score: 69.7 bits (169), Expect = 1.0e-08 Identity = 57/163 (34.97%), Postives = 68/163 (41.72%), Query Frame = 1
BLAST of Cla001437 vs. NCBI nr
Match: gi|255556233|ref|XP_002519151.1| (PREDICTED: pollen-specific leucine-rich repeat extensin-like protein 1 [Ricinus communis]) HSP 1 Score: 66.2 bits (160), Expect = 1.1e-07 Identity = 59/178 (33.15%), Postives = 73/178 (41.01%), Query Frame = 1
HSP 2 Score: 56.2 bits (134), Expect = 1.1e-04 Identity = 49/159 (30.82%), Postives = 64/159 (40.25%), Query Frame = 1
HSP 3 Score: 52.0 bits (123), Expect = 2.2e-03 Identity = 46/157 (29.30%), Postives = 69/157 (43.95%), Query Frame = 1
HSP 4 Score: 48.5 bits (114), Expect = 2.4e-02 Identity = 51/167 (30.54%), Postives = 67/167 (40.12%), Query Frame = 1
HSP 5 Score: 69.3 bits (168), Expect = 1.3e-08 Identity = 55/167 (32.93%), Postives = 75/167 (44.91%), Query Frame = 1
BLAST of Cla001437 vs. NCBI nr
Match: gi|1015672738|gb|AMW20470.1| (hypothetical protein Chelonae_p2719 [Mycobacterium sp. QIA-37]) HSP 1 Score: 65.9 bits (159), Expect = 1.4e-07 Identity = 55/178 (30.90%), Postives = 78/178 (43.82%), Query Frame = 1
BLAST of Cla001437 vs. NCBI nr
Match: gi|914565936|gb|KOB70769.1| (Intestinal mucin, partial [Operophtera brumata]) HSP 1 Score: 64.3 bits (155), Expect = 4.2e-07 Identity = 47/149 (31.54%), Postives = 61/149 (40.94%), Query Frame = 1
BLAST of Cla001437 vs. NCBI nr
Match: gi|914565936|gb|KOB70769.1| (Intestinal mucin, partial [Operophtera brumata]) HSP 1 Score: 62.0 bits (149), Expect = 2.1e-06 Identity = 50/163 (30.67%), Postives = 62/163 (38.04%), Query Frame = 1
HSP 2 Score: 63.9 bits (154), Expect = 5.5e-07 Identity = 45/144 (31.25%), Postives = 63/144 (43.75%), Query Frame = 1
The following BLAST results are available for this feature:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
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