ClCG10G001920.1 (mRNA) Watermelon (Charleston Gray)

Overview
NameClCG10G001920.1
TypemRNA
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionVacuolar protein sorting-associated protein-like protein
LocationCG_Chr10 : 2133751 .. 2134239 (+)
Sequence length315
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTTTATTATTCTTTGCGGGGTCAGATAGTTCTTCACTGTATTCTGATTCTAACGATAGGTTTGACTTTTGCCTCTGTAACCCATTTGATAAGTGTTTTTAATCAGTTGAAAACAGTAATTTTAAGATATTGAAAGATTGCCCAAAACAAACTTTTGTATTCATAAAATTCACGTACTCTTCCCCTTCTCCCCACATATCATTATCATTGAGACAGCTGGATCAACGCGACGAAATTCTTGACCGGAGCTTCGACTGTAGGAAGCATTGCCATCCCCATCATTCTGAAGCATGCCGGGATCATTGGCTGGGGGGCGATGGCAATGGACCTCTCATCGTTTGTGGTATTCGTGATTGCCATTTTGTGTTTCATGGGGATGAGCGAAGACAACGACTACACTATGTTCTGAGATACTCCATCTCCATGGCAATGAAGCTGTGCTATCTCCATCAGGTGAGGCTTCTGGCTCTGTTCATTCTTGTCTGA

mRNA sequence

ATGCCTTTATTATTCTTTGCGGGGTCAGATAGTTCTTCACTGTATTCTGATTCTAACGATAGGTTTGACTTTTGCCTCTACAGCTGGATCAACGCGACGAAATTCTTGACCGGAGCTTCGACTGTAGGAAGCATTGCCATCCCCATCATTCTGAAGCATGCCGGGATCATTGGCTGGGGGGCGATGGCAATGGACCTCTCATCGTTTGTGCGAAGACAACGACTACACTATGTTCTGAGATACTCCATCTCCATGGCAATGAAGCTGTGCTATCTCCATCAGGTGAGGCTTCTGGCTCTGTTCATTCTTGTCTGA

Coding sequence (CDS)

ATGCCTTTATTATTCTTTGCGGGGTCAGATAGTTCTTCACTGTATTCTGATTCTAACGATAGGTTTGACTTTTGCCTCTACAGCTGGATCAACGCGACGAAATTCTTGACCGGAGCTTCGACTGTAGGAAGCATTGCCATCCCCATCATTCTGAAGCATGCCGGGATCATTGGCTGGGGGGCGATGGCAATGGACCTCTCATCGTTTGTGCGAAGACAACGACTACACTATGTTCTGAGATACTCCATCTCCATGGCAATGAAGCTGTGCTATCTCCATCAGGTGAGGCTTCTGGCTCTGTTCATTCTTGTCTGA

Protein sequence

MPLLFFAGSDSSSLYSDSNDRFDFCLYSWINATKFLTGASTVGSIAIPIILKHAGIIGWGAMAMDLSSFVRRQRLHYVLRYSISMAMKLCYLHQVRLLALFILV
Homology
[Close]
BLAST of ClCG10G001920.1 vs. Swiss-Prot
Match: VSP55_ARATH (Vacuolar protein sorting-associated protein 55 homolog OS=Arabidopsis thaliana GN=At1g32410 PE=2 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 3.3e-20
Identity = 48/70 (68.57%), Postives = 57/70 (81.43%), Query Frame = 1 

Query: 1   MPLLFFAGSDSSSLYSDSNDRFDFCLYSWINATKFLTGASTVGSIAIPIILKHAGIIGWG 60
           MPLLFF GSDS+SL+++S++       SWINA KFLTGAS VGS+AIP ILKHAG+IGWG
Sbjct: 55  MPLLFFGGSDSTSLFNESDN-------SWINAAKFLTGASAVGSVAIPSILKHAGLIGWG 114

Query: 61  AMAMDLSSFV 71
           A+A+DLSS+V
Sbjct: 115 ALALDLSSYV 117

[Close]
BLAST of ClCG10G001920.1 vs. TrEMBL
Match: A0A0A0L5B3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G016420 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 3.4e-24
Identity = 61/70 (87.14%), Postives = 63/70 (90.00%), Query Frame = 1 

Query: 1   MPLLFFAGSDSSSLYSDSNDRFDFCLYSWINATKFLTGASTVGSIAIPIILKHAGIIGWG 60
           MPLLFFAGSDSSSLY+DSND       SWINATKFLTGASTVGSIAIP+ILKHAGIIGWG
Sbjct: 55  MPLLFFAGSDSSSLYTDSND-------SWINATKFLTGASTVGSIAIPVILKHAGIIGWG 114

Query: 61  AMAMDLSSFV 71
           AMAMDLSSFV
Sbjct: 115 AMAMDLSSFV 117

[Close]
BLAST of ClCG10G001920.1 vs. TrEMBL
Match: R0GKJ8_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10010576mg PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 2.3e-20
Identity = 54/70 (77.14%), Postives = 60/70 (85.71%), Query Frame = 1 

Query: 1   MPLLFFAGSDSSSLYSDSNDRFDFCLYSWINATKFLTGASTVGSIAIPIILKHAGIIGWG 60
           MPLLFFAGSDSSSLYSDS++       SWINA KFLTGAS VGSIAIP ILKHAG+IGWG
Sbjct: 55  MPLLFFAGSDSSSLYSDSDN-------SWINAAKFLTGASAVGSIAIPSILKHAGLIGWG 114

Query: 61  AMAMDLSSFV 71
           A+A+DLSS+V
Sbjct: 115 ALALDLSSYV 117

[Close]
BLAST of ClCG10G001920.1 vs. TrEMBL
Match: R0GK42_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10010576mg PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 2.3e-20
Identity = 54/70 (77.14%), Postives = 60/70 (85.71%), Query Frame = 1 

Query: 1   MPLLFFAGSDSSSLYSDSNDRFDFCLYSWINATKFLTGASTVGSIAIPIILKHAGIIGWG 60
           MPLLFFAGSDSSSLYSDS++       SWINA KFLTGAS VGSIAIP ILKHAG+IGWG
Sbjct: 61  MPLLFFAGSDSSSLYSDSDN-------SWINAAKFLTGASAVGSIAIPSILKHAGLIGWG 120

Query: 61  AMAMDLSSFV 71
           A+A+DLSS+V
Sbjct: 121 ALALDLSSYV 123

[Close]
BLAST of ClCG10G001920.1 vs. TrEMBL
Match: A0A067K773_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20002 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 6.6e-20
Identity = 52/69 (75.36%), Postives = 60/69 (86.96%), Query Frame = 1 

Query: 1   MPLLFFAGSDSSSLYSDSNDRFDFCLYSWINATKFLTGASTVGSIAIPIILKHAGIIGWG 60
           MPLLFFAGSDSSSL S+S++       SW+NATKFLTGAS VGSIAIP+ILKHAG+IGWG
Sbjct: 74  MPLLFFAGSDSSSLISESDN-------SWVNATKFLTGASVVGSIAIPVILKHAGVIGWG 133

Query: 61  AMAMDLSSF 70
           A+AM+LSSF
Sbjct: 134 ALAMELSSF 135

[Close]
BLAST of ClCG10G001920.1 vs. TrEMBL
Match: K4CN86_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 1.1e-19
Identity = 58/92 (63.04%), Postives = 67/92 (72.83%), Query Frame = 1 

Query: 1   MPLLFFAGSDSSSLYSDSNDRFDFCLYSWINATKFLTGASTVGSIAIPIILKHAGIIGWG 60
           MPL+FFAGSD+SSLY++S          W+NATKFLTGASTVGSIAIPIILKHAG+IGWG
Sbjct: 55  MPLVFFAGSDTSSLYTESGS-------CWLNATKFLTGASTVGSIAIPIILKHAGVIGWG 114

Query: 61  AMAMDLSSFVRRQRLHYVLRYSISMAMKLCYL 93
           AMA++LSSF       +V   SI     LCYL
Sbjct: 115 AMALELSSF-------FVFVLSI-----LCYL 127

[Close]
BLAST of ClCG10G001920.1 vs. TAIR10
Match: AT1G32410.1 (AT1G32410.1 Vacuolar protein sorting 55 (VPS55) family protein)

HSP 1 Score: 99.0 bits (245), Expect = 1.8e-21
Identity = 48/70 (68.57%), Postives = 57/70 (81.43%), Query Frame = 1 

Query: 1   MPLLFFAGSDSSSLYSDSNDRFDFCLYSWINATKFLTGASTVGSIAIPIILKHAGIIGWG 60
           MPLLFF GSDS+SL+++S++       SWINA KFLTGAS VGS+AIP ILKHAG+IGWG
Sbjct: 55  MPLLFFGGSDSTSLFNESDN-------SWINAAKFLTGASAVGSVAIPSILKHAGLIGWG 114

Query: 61  AMAMDLSSFV 71
           A+A+DLSS+V
Sbjct: 115 ALALDLSSYV 117

[Close]
BLAST of ClCG10G001920.1 vs. TAIR10
Match: AT3G11530.1 (AT3G11530.1 Vacuolar protein sorting 55 (VPS55) family protein)

HSP 1 Score: 65.9 bits (159), Expect = 1.7e-11
Identity = 35/69 (50.72%), Postives = 42/69 (60.87%), Query Frame = 1 

Query: 1  MPLLFFAGSDSSSLYSDSNDRFDFCLYSWINATKFLTGASTVGSIAIPIILKHAGIIGWG 60
          MP +FF G  +  L S            WI+A KFLTGASTVGS+AIPIIL+HA +I  G
Sbjct: 33 MPCMFFGGGSTQFLISRDGG-------GWIDAAKFLTGASTVGSLAIPIILRHAQMIETG 92

Query: 61 AMAMDLSSF 70
          AM ++ +SF
Sbjct: 93 AMLIEFTSF 94

[Close]
BLAST of ClCG10G001920.1 vs. NCBI nr
Match: gi|449464906|ref|XP_004150170.1| (PREDICTED: vacuolar protein sorting-associated protein 55 homolog [Cucumis sativus])

HSP 1 Score: 119.0 bits (297), Expect = 4.9e-24
Identity = 61/70 (87.14%), Postives = 63/70 (90.00%), Query Frame = 1 

Query: 1   MPLLFFAGSDSSSLYSDSNDRFDFCLYSWINATKFLTGASTVGSIAIPIILKHAGIIGWG 60
           MPLLFFAGSDSSSLY+DSND       SWINATKFLTGASTVGSIAIP+ILKHAGIIGWG
Sbjct: 55  MPLLFFAGSDSSSLYTDSND-------SWINATKFLTGASTVGSIAIPVILKHAGIIGWG 114

Query: 61  AMAMDLSSFV 71
           AMAMDLSSFV
Sbjct: 115 AMAMDLSSFV 117

[Close]
BLAST of ClCG10G001920.1 vs. NCBI nr
Match: gi|659095739|ref|XP_008448742.1| (PREDICTED: vacuolar protein sorting-associated protein 55 homolog [Cucumis melo])

HSP 1 Score: 119.0 bits (297), Expect = 4.9e-24
Identity = 61/70 (87.14%), Postives = 63/70 (90.00%), Query Frame = 1 

Query: 1   MPLLFFAGSDSSSLYSDSNDRFDFCLYSWINATKFLTGASTVGSIAIPIILKHAGIIGWG 60
           MPLLFFAGSDSSSLY+DSND       SWINATKFLTGASTVGSIAIP+ILKHAGIIGWG
Sbjct: 55  MPLLFFAGSDSSSLYTDSND-------SWINATKFLTGASTVGSIAIPVILKHAGIIGWG 114

Query: 61  AMAMDLSSFV 71
           AMAMDLSSFV
Sbjct: 115 AMAMDLSSFV 117

[Close]
BLAST of ClCG10G001920.1 vs. NCBI nr
Match: gi|697172934|ref|XP_009595403.1| (PREDICTED: vacuolar protein sorting-associated protein 55 homolog isoform X2 [Nicotiana tomentosiformis])

HSP 1 Score: 107.5 bits (267), Expect = 1.5e-20
Identity = 60/92 (65.22%), Postives = 68/92 (73.91%), Query Frame = 1 

Query: 1   MPLLFFAGSDSSSLYSDSNDRFDFCLYSWINATKFLTGASTVGSIAIPIILKHAGIIGWG 60
           MPL+FFAGSD+SSLYS+S          W+NATKFLTGASTVGSIAIPIILKHAG+IGWG
Sbjct: 34  MPLMFFAGSDTSSLYSESGS-------GWLNATKFLTGASTVGSIAIPIILKHAGVIGWG 93

Query: 61  AMAMDLSSFVRRQRLHYVLRYSISMAMKLCYL 93
           AMA++LSSF       +VL  SI     LCYL
Sbjct: 94  AMALELSSF-------FVLVLSI-----LCYL 106

[Close]
BLAST of ClCG10G001920.1 vs. NCBI nr
Match: gi|697172932|ref|XP_009595402.1| (PREDICTED: vacuolar protein sorting-associated protein 55 homolog isoform X1 [Nicotiana tomentosiformis])

HSP 1 Score: 107.5 bits (267), Expect = 1.5e-20
Identity = 60/92 (65.22%), Postives = 68/92 (73.91%), Query Frame = 1 

Query: 1   MPLLFFAGSDSSSLYSDSNDRFDFCLYSWINATKFLTGASTVGSIAIPIILKHAGIIGWG 60
           MPL+FFAGSD+SSLYS+S          W+NATKFLTGASTVGSIAIPIILKHAG+IGWG
Sbjct: 55  MPLMFFAGSDTSSLYSESGS-------GWLNATKFLTGASTVGSIAIPIILKHAGVIGWG 114

Query: 61  AMAMDLSSFVRRQRLHYVLRYSISMAMKLCYL 93
           AMA++LSSF       +VL  SI     LCYL
Sbjct: 115 AMALELSSF-------FVLVLSI-----LCYL 127

[Close]
BLAST of ClCG10G001920.1 vs. NCBI nr
Match: gi|565491520|ref|XP_006303399.1| (hypothetical protein CARUB_v10010576mg [Capsella rubella])

HSP 1 Score: 106.3 bits (264), Expect = 3.3e-20
Identity = 54/70 (77.14%), Postives = 60/70 (85.71%), Query Frame = 1 

Query: 1   MPLLFFAGSDSSSLYSDSNDRFDFCLYSWINATKFLTGASTVGSIAIPIILKHAGIIGWG 60
           MPLLFFAGSDSSSLYSDS++       SWINA KFLTGAS VGSIAIP ILKHAG+IGWG
Sbjct: 61  MPLLFFAGSDSSSLYSDSDN-------SWINAAKFLTGASAVGSIAIPSILKHAGLIGWG 120

Query: 61  AMAMDLSSFV 71
           A+A+DLSS+V
Sbjct: 121 ALALDLSSYV 123

The following BLAST results are available for this feature:
BLAST of ClCG10G001920.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
VSP55_ARATH3.3e-2068.57Vacuolar protein sorting-associated protein 55 homolog OS=Arabidopsis thaliana G... [more]
BLAST of ClCG10G001920.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L5B3_CUCSA3.4e-2487.14Uncharacterized protein OS=Cucumis sativus GN=Csa_3G016420 PE=4 SV=1[more]
R0GKJ8_9BRAS2.3e-2077.14Uncharacterized protein OS=Capsella rubella GN=CARUB_v10010576mg PE=4 SV=1[more]
R0GK42_9BRAS2.3e-2077.14Uncharacterized protein OS=Capsella rubella GN=CARUB_v10010576mg PE=4 SV=1[more]
A0A067K773_JATCU6.6e-2075.36Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20002 PE=4 SV=1[more]
K4CN86_SOLLC1.1e-1963.04Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1[more]
BLAST of ClCG10G001920.1 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G32410.11.8e-2168.57 Vacuolar protein sorting 55 (VPS55) family protein[more]
AT3G11530.11.7e-1150.72 Vacuolar protein sorting 55 (VPS55) family protein[more]
BLAST of ClCG10G001920.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449464906|ref|XP_004150170.1|4.9e-2487.14PREDICTED: vacuolar protein sorting-associated protein 55 homolog [Cucumis sativ... [more]
gi|659095739|ref|XP_008448742.1|4.9e-2487.14PREDICTED: vacuolar protein sorting-associated protein 55 homolog [Cucumis melo][more]
gi|697172934|ref|XP_009595403.1|1.5e-2065.22PREDICTED: vacuolar protein sorting-associated protein 55 homolog isoform X2 [Ni... [more]
gi|697172932|ref|XP_009595402.1|1.5e-2065.22PREDICTED: vacuolar protein sorting-associated protein 55 homolog isoform X1 [Ni... [more]
gi|565491520|ref|XP_006303399.1|3.3e-2077.14hypothetical protein CARUB_v10010576mg [Capsella rubella][more]
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR007262VPS55
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005773 vacuole
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
ClCG10G001920ClCG10G001920gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
ClCG10G001920.1ClCG10G001920.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
ClCG10G001920.1.cds1ClCG10G001920.1.cds1CDS
ClCG10G001920.1.cds2ClCG10G001920.1.cds2CDS
ClCG10G001920.1.cds3ClCG10G001920.1.cds3CDS


InterPro
Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007262Vacuolar protein sorting 55PANTHERPTHR12050LEPTIN RECEPTOR-RELATEDcoord: 6..70
score: 7.7
IPR007262Vacuolar protein sorting 55PFAMPF04133Vps55coord: 3..70
score: 1.9
NoneNo IPR availablePANTHERPTHR12050:SF1VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 55 HOMOLOGcoord: 6..70
score: 7.7