ClCG10G001920 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG10G001920
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Vacuolar protein sorting-associated protein-like protein
Location	CG_Chr10 : 2133751 .. 2134239 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTTTATTATTCTTTGCGGGGTCAGATAGTTCTTCACTGTATTCTGATTCTAACGATAGGTTTGACTTTTGCCTCTGTAACCCATTTGATAAGTGTTTTTAATCAGTTGAAAACAGTAATTTTAAGATATTGAAAGATTGCCCAAAACAAACTTTTGTATTCATAAAATTCACGTACTCTTCCCCTTCTCCCCACATATCATTATCATTGAGACAGCTGGATCAACGCGACGAAATTCTTGACCGGAGCTTCGACTGTAGGAAGCATTGCCATCCCCATCATTCTGAAGCATGCCGGGATCATTGGCTGGGGGGCGATGGCAATGGACCTCTCATCGTTTGTGGTATTCGTGATTGCCATTTTGTGTTTCATGGGGATGAGCGAAGACAACGACTACACTATGTTCTGAGATACTCCATCTCCATGGCAATGAAGCTGTGCTATCTCCATCAGGTGAGGCTTCTGGCTCTGTTCATTCTTGTCTGA

mRNA sequence

ATGCCTTTATTATTCTTTGCGGGGTCAGATAGTTCTTCACTGTATTCTGATTCTAACGATAGGTTTGACTTTTGCCTCTACAGCTGGATCAACGCGACGAAATTCTTGACCGGAGCTTCGACTGTAGGAAGCATTGCCATCCCCATCATTCTGAAGCATGCCGGGATCATTGGCTGGGGGGCGATGGCAATGGACCTCTCATCGTTTGTGCGAAGACAACGACTACACTATGTTCTGAGATACTCCATCTCCATGGCAATGAAGCTGTGCTATCTCCATCAGGTGAGGCTTCTGGCTCTGTTCATTCTTGTCTGA

Coding sequence (CDS)

ATGCCTTTATTATTCTTTGCGGGGTCAGATAGTTCTTCACTGTATTCTGATTCTAACGATAGGTTTGACTTTTGCCTCTACAGCTGGATCAACGCGACGAAATTCTTGACCGGAGCTTCGACTGTAGGAAGCATTGCCATCCCCATCATTCTGAAGCATGCCGGGATCATTGGCTGGGGGGCGATGGCAATGGACCTCTCATCGTTTGTGCGAAGACAACGACTACACTATGTTCTGAGATACTCCATCTCCATGGCAATGAAGCTGTGCTATCTCCATCAGGTGAGGCTTCTGGCTCTGTTCATTCTTGTCTGA

Protein sequence

MPLLFFAGSDSSSLYSDSNDRFDFCLYSWINATKFLTGASTVGSIAIPIILKHAGIIGWGAMAMDLSSFVRRQRLHYVLRYSISMAMKLCYLHQVRLLALFILV

Homology

[Close]

BLAST of ClCG10G001920 vs. Swiss-Prot
Match: VSP55_ARATH (Vacuolar protein sorting-associated protein 55 homolog OS=Arabidopsis thaliana GN=At1g32410 PE=2 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 3.3e-20
Identity = 48/70 (68.57%), Postives = 57/70 (81.43%), Query Frame = 1


Query: 1   MPLLFFAGSDSSSLYSDSNDRFDFCLYSWINATKFLTGASTVGSIAIPIILKHAGIIGWG 60
           MPLLFF GSDS+SL+++S++       SWINA KFLTGAS VGS+AIP ILKHAG+IGWG
Sbjct: 55  MPLLFFGGSDSTSLFNESDN-------SWINAAKFLTGASAVGSVAIPSILKHAGLIGWG 114

Query: 61  AMAMDLSSFV 71
           A+A+DLSS+V
Sbjct: 115 ALALDLSSYV 117

[Close]

BLAST of ClCG10G001920 vs. TrEMBL
Match: A0A0A0L5B3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G016420 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 3.4e-24
Identity = 61/70 (87.14%), Postives = 63/70 (90.00%), Query Frame = 1


Query: 1   MPLLFFAGSDSSSLYSDSNDRFDFCLYSWINATKFLTGASTVGSIAIPIILKHAGIIGWG 60
           MPLLFFAGSDSSSLY+DSND       SWINATKFLTGASTVGSIAIP+ILKHAGIIGWG
Sbjct: 55  MPLLFFAGSDSSSLYTDSND-------SWINATKFLTGASTVGSIAIPVILKHAGIIGWG 114

Query: 61  AMAMDLSSFV 71
           AMAMDLSSFV
Sbjct: 115 AMAMDLSSFV 117

[Close]

BLAST of ClCG10G001920 vs. TrEMBL
Match: R0GKJ8_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10010576mg PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 2.3e-20
Identity = 54/70 (77.14%), Postives = 60/70 (85.71%), Query Frame = 1


Query: 1   MPLLFFAGSDSSSLYSDSNDRFDFCLYSWINATKFLTGASTVGSIAIPIILKHAGIIGWG 60
           MPLLFFAGSDSSSLYSDS++       SWINA KFLTGAS VGSIAIP ILKHAG+IGWG
Sbjct: 55  MPLLFFAGSDSSSLYSDSDN-------SWINAAKFLTGASAVGSIAIPSILKHAGLIGWG 114

Query: 61  AMAMDLSSFV 71
           A+A+DLSS+V
Sbjct: 115 ALALDLSSYV 117

[Close]

BLAST of ClCG10G001920 vs. TrEMBL
Match: R0GK42_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10010576mg PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 2.3e-20
Identity = 54/70 (77.14%), Postives = 60/70 (85.71%), Query Frame = 1


Query: 1   MPLLFFAGSDSSSLYSDSNDRFDFCLYSWINATKFLTGASTVGSIAIPIILKHAGIIGWG 60
           MPLLFFAGSDSSSLYSDS++       SWINA KFLTGAS VGSIAIP ILKHAG+IGWG
Sbjct: 61  MPLLFFAGSDSSSLYSDSDN-------SWINAAKFLTGASAVGSIAIPSILKHAGLIGWG 120

Query: 61  AMAMDLSSFV 71
           A+A+DLSS+V
Sbjct: 121 ALALDLSSYV 123

[Close]

BLAST of ClCG10G001920 vs. TrEMBL
Match: A0A067K773_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20002 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 6.6e-20
Identity = 52/69 (75.36%), Postives = 60/69 (86.96%), Query Frame = 1


Query: 1   MPLLFFAGSDSSSLYSDSNDRFDFCLYSWINATKFLTGASTVGSIAIPIILKHAGIIGWG 60
           MPLLFFAGSDSSSL S+S++       SW+NATKFLTGAS VGSIAIP+ILKHAG+IGWG
Sbjct: 74  MPLLFFAGSDSSSLISESDN-------SWVNATKFLTGASVVGSIAIPVILKHAGVIGWG 133

Query: 61  AMAMDLSSF 70
           A+AM+LSSF
Sbjct: 134 ALAMELSSF 135

[Close]

BLAST of ClCG10G001920 vs. TrEMBL
Match: K4CN86_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 1.1e-19
Identity = 58/92 (63.04%), Postives = 67/92 (72.83%), Query Frame = 1


Query: 1   MPLLFFAGSDSSSLYSDSNDRFDFCLYSWINATKFLTGASTVGSIAIPIILKHAGIIGWG 60
           MPL+FFAGSD+SSLY++S          W+NATKFLTGASTVGSIAIPIILKHAG+IGWG
Sbjct: 55  MPLVFFAGSDTSSLYTESGS-------CWLNATKFLTGASTVGSIAIPIILKHAGVIGWG 114

Query: 61  AMAMDLSSFVRRQRLHYVLRYSISMAMKLCYL 93
           AMA++LSSF       +V   SI     LCYL
Sbjct: 115 AMALELSSF-------FVFVLSI-----LCYL 127

[Close]

BLAST of ClCG10G001920 vs. TAIR10
Match: AT1G32410.1 (AT1G32410.1 Vacuolar protein sorting 55 (VPS55) family protein)

HSP 1 Score: 99.0 bits (245), Expect = 1.8e-21
Identity = 48/70 (68.57%), Postives = 57/70 (81.43%), Query Frame = 1


Query: 1   MPLLFFAGSDSSSLYSDSNDRFDFCLYSWINATKFLTGASTVGSIAIPIILKHAGIIGWG 60
           MPLLFF GSDS+SL+++S++       SWINA KFLTGAS VGS+AIP ILKHAG+IGWG
Sbjct: 55  MPLLFFGGSDSTSLFNESDN-------SWINAAKFLTGASAVGSVAIPSILKHAGLIGWG 114

Query: 61  AMAMDLSSFV 71
           A+A+DLSS+V
Sbjct: 115 ALALDLSSYV 117

[Close]

BLAST of ClCG10G001920 vs. TAIR10
Match: AT3G11530.1 (AT3G11530.1 Vacuolar protein sorting 55 (VPS55) family protein)

HSP 1 Score: 65.9 bits (159), Expect = 1.7e-11
Identity = 35/69 (50.72%), Postives = 42/69 (60.87%), Query Frame = 1


Query: 1  MPLLFFAGSDSSSLYSDSNDRFDFCLYSWINATKFLTGASTVGSIAIPIILKHAGIIGWG 60
          MP +FF G  +  L S            WI+A KFLTGASTVGS+AIPIIL+HA +I  G
Sbjct: 33 MPCMFFGGGSTQFLISRDGG-------GWIDAAKFLTGASTVGSLAIPIILRHAQMIETG 92

Query: 61 AMAMDLSSF 70
          AM ++ +SF
Sbjct: 93 AMLIEFTSF 94

[Close]

BLAST of ClCG10G001920 vs. NCBI nr
Match: gi|449464906|ref|XP_004150170.1| (PREDICTED: vacuolar protein sorting-associated protein 55 homolog [Cucumis sativus])

HSP 1 Score: 119.0 bits (297), Expect = 4.9e-24
Identity = 61/70 (87.14%), Postives = 63/70 (90.00%), Query Frame = 1


Query: 1   MPLLFFAGSDSSSLYSDSNDRFDFCLYSWINATKFLTGASTVGSIAIPIILKHAGIIGWG 60
           MPLLFFAGSDSSSLY+DSND       SWINATKFLTGASTVGSIAIP+ILKHAGIIGWG
Sbjct: 55  MPLLFFAGSDSSSLYTDSND-------SWINATKFLTGASTVGSIAIPVILKHAGIIGWG 114

Query: 61  AMAMDLSSFV 71
           AMAMDLSSFV
Sbjct: 115 AMAMDLSSFV 117

[Close]

BLAST of ClCG10G001920 vs. NCBI nr
Match: gi|659095739|ref|XP_008448742.1| (PREDICTED: vacuolar protein sorting-associated protein 55 homolog [Cucumis melo])

HSP 1 Score: 119.0 bits (297), Expect = 4.9e-24
Identity = 61/70 (87.14%), Postives = 63/70 (90.00%), Query Frame = 1


Query: 1   MPLLFFAGSDSSSLYSDSNDRFDFCLYSWINATKFLTGASTVGSIAIPIILKHAGIIGWG 60
           MPLLFFAGSDSSSLY+DSND       SWINATKFLTGASTVGSIAIP+ILKHAGIIGWG
Sbjct: 55  MPLLFFAGSDSSSLYTDSND-------SWINATKFLTGASTVGSIAIPVILKHAGIIGWG 114

Query: 61  AMAMDLSSFV 71
           AMAMDLSSFV
Sbjct: 115 AMAMDLSSFV 117

[Close]

BLAST of ClCG10G001920 vs. NCBI nr
Match: gi|697172934|ref|XP_009595403.1| (PREDICTED: vacuolar protein sorting-associated protein 55 homolog isoform X2 [Nicotiana tomentosiformis])

HSP 1 Score: 107.5 bits (267), Expect = 1.5e-20
Identity = 60/92 (65.22%), Postives = 68/92 (73.91%), Query Frame = 1


Query: 1   MPLLFFAGSDSSSLYSDSNDRFDFCLYSWINATKFLTGASTVGSIAIPIILKHAGIIGWG 60
           MPL+FFAGSD+SSLYS+S          W+NATKFLTGASTVGSIAIPIILKHAG+IGWG
Sbjct: 34  MPLMFFAGSDTSSLYSESGS-------GWLNATKFLTGASTVGSIAIPIILKHAGVIGWG 93

Query: 61  AMAMDLSSFVRRQRLHYVLRYSISMAMKLCYL 93
           AMA++LSSF       +VL  SI     LCYL
Sbjct: 94  AMALELSSF-------FVLVLSI-----LCYL 106

[Close]

BLAST of ClCG10G001920 vs. NCBI nr
Match: gi|697172932|ref|XP_009595402.1| (PREDICTED: vacuolar protein sorting-associated protein 55 homolog isoform X1 [Nicotiana tomentosiformis])

HSP 1 Score: 107.5 bits (267), Expect = 1.5e-20
Identity = 60/92 (65.22%), Postives = 68/92 (73.91%), Query Frame = 1


Query: 1   MPLLFFAGSDSSSLYSDSNDRFDFCLYSWINATKFLTGASTVGSIAIPIILKHAGIIGWG 60
           MPL+FFAGSD+SSLYS+S          W+NATKFLTGASTVGSIAIPIILKHAG+IGWG
Sbjct: 55  MPLMFFAGSDTSSLYSESGS-------GWLNATKFLTGASTVGSIAIPIILKHAGVIGWG 114

Query: 61  AMAMDLSSFVRRQRLHYVLRYSISMAMKLCYL 93
           AMA++LSSF       +VL  SI     LCYL
Sbjct: 115 AMALELSSF-------FVLVLSI-----LCYL 127

[Close]

BLAST of ClCG10G001920 vs. NCBI nr
Match: gi|565491520|ref|XP_006303399.1| (hypothetical protein CARUB_v10010576mg [Capsella rubella])

HSP 1 Score: 106.3 bits (264), Expect = 3.3e-20
Identity = 54/70 (77.14%), Postives = 60/70 (85.71%), Query Frame = 1


Query: 1   MPLLFFAGSDSSSLYSDSNDRFDFCLYSWINATKFLTGASTVGSIAIPIILKHAGIIGWG 60
           MPLLFFAGSDSSSLYSDS++       SWINA KFLTGAS VGSIAIP ILKHAG+IGWG
Sbjct: 61  MPLLFFAGSDSSSLYSDSDN-------SWINAAKFLTGASAVGSIAIPSILKHAGLIGWG 120

Query: 61  AMAMDLSSFV 71
           A+A+DLSS+V
Sbjct: 121 ALALDLSSYV 123

The following BLAST results are available for this feature:

BLAST of ClCG10G001920 vs. Swiss-Prot


Match Name	E-value	Identity	Description
VSP55_ARATH	3.3e-20	68.57	Vacuolar protein sorting-associated protein 55 homolog OS=Arabidopsis thaliana G...	[more]

BLAST of ClCG10G001920 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L5B3_CUCSA	3.4e-24	87.14	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G016420 PE=4 SV=1	[more]
R0GKJ8_9BRAS	2.3e-20	77.14	Uncharacterized protein OS=Capsella rubella GN=CARUB_v10010576mg PE=4 SV=1	[more]
R0GK42_9BRAS	2.3e-20	77.14	Uncharacterized protein OS=Capsella rubella GN=CARUB_v10010576mg PE=4 SV=1	[more]
A0A067K773_JATCU	6.6e-20	75.36	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20002 PE=4 SV=1	[more]
K4CN86_SOLLC	1.1e-19	63.04	Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1	[more]

BLAST of ClCG10G001920 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G32410.1	1.8e-21	68.57	Vacuolar protein sorting 55 (VPS55) family protein	[more]
AT3G11530.1	1.7e-11	50.72	Vacuolar protein sorting 55 (VPS55) family protein	[more]

BLAST of ClCG10G001920 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449464906\|ref\|XP_004150170.1\|	4.9e-24	87.14	PREDICTED: vacuolar protein sorting-associated protein 55 homolog [Cucumis sativ...	[more]
gi\|659095739\|ref\|XP_008448742.1\|	4.9e-24	87.14	PREDICTED: vacuolar protein sorting-associated protein 55 homolog [Cucumis melo]	[more]
gi\|697172934\|ref\|XP_009595403.1\|	1.5e-20	65.22	PREDICTED: vacuolar protein sorting-associated protein 55 homolog isoform X2 [Ni...	[more]
gi\|697172932\|ref\|XP_009595402.1\|	1.5e-20	65.22	PREDICTED: vacuolar protein sorting-associated protein 55 homolog isoform X1 [Ni...	[more]
gi\|565491520\|ref\|XP_006303399.1\|	3.3e-20	77.14	hypothetical protein CARUB_v10010576mg [Capsella rubella]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR007262	VPS55

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0008152	metabolic process
biological_process	GO:0032511	late endosome to vacuole transport via multivesicular body sorting pathway
biological_process	GO:2000009	negative regulation of protein localization to cell surface
cellular_component	GO:0005773	vacuole
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005768	endosome
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0016787	hydrolase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG10G001920.1	ClCG10G001920.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007262	Vacuolar protein sorting 55	PANTHER	PTHR12050	LEPTIN RECEPTOR-RELATED	coord: 6..70 score: 7.7
IPR007262	Vacuolar protein sorting 55	PFAM	PF04133	Vps55	coord: 3..70 score: 1.9
None	No IPR available	PANTHER	PTHR12050:SF1	VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 55 HOMOLOG	coord: 6..70 score: 7.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG10G001920	Cla008776	Watermelon (97103) v1	wcgwmB056
ClCG10G001920	CmaCh16G010860	Cucurbita maxima (Rimu)	cmawcgB281
ClCG10G001920	CsGy3G001890	Cucumber (Gy14) v2	cgybwcgB174

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG10G001920	Wax gourd	wcgwgoB095
ClCG10G001920	Wax gourd	wcgwgoB114
ClCG10G001920	Watermelon (Charleston Gray)	wcgwcgB003
ClCG10G001920	Watermelon (Charleston Gray)	wcgwcgB052
ClCG10G001920	Cucumber (Gy14) v1	cgywcgB535
ClCG10G001920	Cucumber (Gy14) v1	cgywcgB556
ClCG10G001920	Cucurbita maxima (Rimu)	cmawcgB515
ClCG10G001920	Cucurbita maxima (Rimu)	cmawcgB727
ClCG10G001920	Cucurbita moschata (Rifu)	cmowcgB272
ClCG10G001920	Cucurbita moschata (Rifu)	cmowcgB513
ClCG10G001920	Cucurbita moschata (Rifu)	cmowcgB730
ClCG10G001920	Wild cucumber (PI 183967)	cpiwcgB190
ClCG10G001920	Wild cucumber (PI 183967)	cpiwcgB192
ClCG10G001920	Cucumber (Chinese Long) v2	cuwcgB189
ClCG10G001920	Cucumber (Chinese Long) v2	cuwcgB191
ClCG10G001920	Melon (DHL92) v3.5.1	mewcgB317
ClCG10G001920	Melon (DHL92) v3.5.1	mewcgB415
ClCG10G001920	Watermelon (97103) v1	wcgwmB045
ClCG10G001920	Cucurbita pepo (Zucchini)	cpewcgB004
ClCG10G001920	Cucurbita pepo (Zucchini)	cpewcgB189
ClCG10G001920	Cucurbita pepo (Zucchini)	cpewcgB631
ClCG10G001920	Bottle gourd (USVL1VR-Ls)	lsiwcgB320
ClCG10G001920	Bottle gourd (USVL1VR-Ls)	lsiwcgB389
ClCG10G001920	Cucumber (Gy14) v2	cgybwcgB176
ClCG10G001920	Melon (DHL92) v3.6.1	medwcgB312
ClCG10G001920	Melon (DHL92) v3.6.1	medwcgB401
ClCG10G001920	Silver-seed gourd	carwcgB0549
ClCG10G001920	Silver-seed gourd	carwcgB0683
ClCG10G001920	Silver-seed gourd	carwcgB0754
ClCG10G001920	Cucumber (Chinese Long) v3	cucwcgB194
ClCG10G001920	Cucumber (Chinese Long) v3	cucwcgB196
ClCG10G001920	Watermelon (97103) v2	wcgwmbB038
ClCG10G001920	Watermelon (97103) v2	wcgwmbB053