ClCG08G010030.1 (mRNA) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG08G010030.1
Type	mRNA
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Chromosome chr9 scaffold_7, whole genome shotgun sequence
Location	CG_Chr08 : 22822509 .. 22822787 (+)
Sequence length	279

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGATGAGAGAAGAAGTTCTTATGGAAACTCGTCTATGGAGATTGAAAAGTATTATGGGCCACCAAAAAGCCAAGAATCTGTAAAGAAAGGGAAAAGTATTTCTGGGTCATCTTCAAAATCATGGAGATTTGTTGGAGACCCTGAATTTCAAAGGAAAAGAAGAGTTGCAAGCTACAAGATGTATTCTGTTGAAGGCAAGATGAAAGGATCCTTCAGAAAAAGCTTCAAATGGCTTAAAGATAAGTACACCCAAATGCTTTATGGCTGGTGGTGA

mRNA sequence

ATGGATGATGAGAGAAGAAGTTCTTATGGAAACTCGTCTATGGAGATTGAAAAGTATTATGGGCCACCAAAAAGCCAAGAATCTGTAAAGAAAGGGAAAAGTATTTCTGGGTCATCTTCAAAATCATGGAGATTTGTTGGAGACCCTGAATTTCAAAGGAAAAGAAGAGTTGCAAGCTACAAGATGTATTCTGTTGAAGGCAAGATGAAAGGATCCTTCAGAAAAAGCTTCAAATGGCTTAAAGATAAGTACACCCAAATGCTTTATGGCTGGTGGTGA

Coding sequence (CDS)

ATGGATGATGAGAGAAGAAGTTCTTATGGAAACTCGTCTATGGAGATTGAAAAGTATTATGGGCCACCAAAAAGCCAAGAATCTGTAAAGAAAGGGAAAAGTATTTCTGGGTCATCTTCAAAATCATGGAGATTTGTTGGAGACCCTGAATTTCAAAGGAAAAGAAGAGTTGCAAGCTACAAGATGTATTCTGTTGAAGGCAAGATGAAAGGATCCTTCAGAAAAAGCTTCAAATGGCTTAAAGATAAGTACACCCAAATGCTTTATGGCTGGTGGTGA

Protein sequence

MDDERRSSYGNSSMEIEKYYGPPKSQESVKKGKSISGSSSKSWRFVGDPEFQRKRRVASYKMYSVEGKMKGSFRKSFKWLKDKYTQMLYGWW

Homology

[Close]

BLAST of ClCG08G010030.1 vs. TrEMBL
Match: A0A0A0KFK3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G364115 PE=4 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 1.9e-34
Identity = 73/80 (91.25%), Postives = 75/80 (93.75%), Query Frame = 1


Query: 14 MEIEKYYGPP-KSQESVKKGKSISGSSSKSWRFVGDPEFQRKRRVASYKMYSVEGKMKGS 73
          MEIEKYYGP  KSQ SVKKGKS SGSSSKSWRFV DPEFQRK+RVASYKMYSVEGKMKGS
Sbjct: 1  MEIEKYYGPSSKSQVSVKKGKSTSGSSSKSWRFVADPEFQRKKRVASYKMYSVEGKMKGS 60

Query: 74 FRKSFKWLKDKYTQMLYGWW 93
          FRKSF+WLKDKYTQMLYGWW
Sbjct: 61 FRKSFRWLKDKYTQMLYGWW 80

[Close]

BLAST of ClCG08G010030.1 vs. TrEMBL
Match: W9R3W8_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_000591 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 2.2e-27
Identity = 66/112 (58.93%), Postives = 78/112 (69.64%), Query Frame = 1


Query: 2   DDERRSSYGNSSMEIEKYYGPPKSQES--------------------VKKGKSISGSSS- 61
           D  R  SYG+  M+I+ YYGPP+S  +                    +KKGK+ SGSSS 
Sbjct: 3   DCNRSRSYGSGMMQIDNYYGPPRSFSTSHTQTQMGNDINNNNIRDLKMKKGKNASGSSSS 62

Query: 62  KSWRFVGDPEFQRKRRVASYKMYSVEGKMKGSFRKSFKWLKDKYTQMLYGWW 93
           K W F GDPEFQRK+RVASYKMYSVEGK+KGSFRKSF+WLKDKYTQ++YGWW
Sbjct: 63  KPWSF-GDPEFQRKKRVASYKMYSVEGKVKGSFRKSFRWLKDKYTQVVYGWW 113

[Close]

BLAST of ClCG08G010030.1 vs. TrEMBL
Match: M1AEQ2_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400008197 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 7.9e-25
Identity = 61/107 (57.01%), Postives = 73/107 (68.22%), Query Frame = 1


Query: 1   MDDERRSSYGNSSMEIEKYYGPPKSQE----------------SVKKGKSISGSSSKSWR 60
           MDD R  SY +  M+++KY+ P  S +                 +KKGKS SGSSSKSW 
Sbjct: 1   MDDYRSKSYADGRMQMDKYHEPQFSNDLRSVGAPPPAHHNKDLKLKKGKSTSGSSSKSWN 60

Query: 61  FVGDPEFQRKRRVASYKMYSVEGKMKGSFRKSFKWLKDKYTQMLYGW 92
           F  DPEFQRKRRVASYK+YSVEGK+KGS R+S +W KDKYTQ+LYGW
Sbjct: 61  F-NDPEFQRKRRVASYKVYSVEGKVKGSLRRSLRWFKDKYTQVLYGW 106

[Close]

BLAST of ClCG08G010030.1 vs. TrEMBL
Match: A0A0D2RTX7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G043500 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 1.8e-24
Identity = 64/123 (52.03%), Postives = 78/123 (63.41%), Query Frame = 1


Query: 1   MDDERRS-SYGNSSMEIEKYYGPPKSQES-----------------------------VK 60
           M+D  RS SYGN  M+++ Y+GPP+   S                             +K
Sbjct: 1   MEDYNRSRSYGNGMMQLDTYHGPPRPSASYDLRCHSAAAYAQSQMANNYNSGNNRDFKLK 60

Query: 61  KGKSISGSSSKS-WRFVGDPEFQRKRRVASYKMYSVEGKMKGSFRKSFKWLKDKYTQMLY 93
           KGKS S SSS + W F GDPEFQRK+RVASYKMYSVEGK+KGS R+SF+WLKDKYTQ++Y
Sbjct: 61  KGKSASASSSSNPWSF-GDPEFQRKKRVASYKMYSVEGKVKGSLRRSFRWLKDKYTQVVY 120

[Close]

BLAST of ClCG08G010030.1 vs. TrEMBL
Match: M5XFG9_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013495mg PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 2.3e-24
Identity = 65/117 (55.56%), Postives = 74/117 (63.25%), Query Frame = 1


Query: 2   DDERRSSYGNSS--MEIEKYYGPPKSQES------------------------VKKGKSI 61
           D  R  SYG  S  M++E YYGPP+   S                        +KKGKS 
Sbjct: 3   DYSRSKSYGTGSGTMQMENYYGPPRPPTSYELRSYSVSYAQTQMANNNNRDFKLKKGKST 62

Query: 62  SGSSSKSWRFVGDPEFQRKRRVASYKMYSVEGKMKGSFRKSFKWLKDKYTQMLYGWW 93
           SGSSSKS   + DPE QRK+RVASYKMYSVEGKMKGSFRKSF+WLKDK TQ++YGWW
Sbjct: 63  SGSSSKSNWGLMDPELQRKKRVASYKMYSVEGKMKGSFRKSFRWLKDKCTQVVYGWW 119

[Close]

BLAST of ClCG08G010030.1 vs. TAIR10
Match: AT5G11970.1 (AT5G11970.1 Protein of unknown function (DUF3511))

HSP 1 Score: 99.8 bits (247), Expect = 9.6e-22
Identity = 53/106 (50.00%), Postives = 64/106 (60.38%), Query Frame = 1


Query: 2   DDERRSSYGNSSMEIEKYYGPPKSQ---------------ESVKKGKSISGSSSKSWRFV 61
           D  R+  YG+  M+I+ Y+G                      VKK KSI+   SKSW  +
Sbjct: 3   DFGRQRPYGDGGMQIQPYHGNQGGDFRSYSASYGTRENNIYDVKKEKSIA--RSKSWG-I 62

Query: 62  GDPEFQRKRRVASYKMYSVEGKMKGSFRKSFKWLKDKYTQMLYGWW 93
            DPE QRK+RVASYKMY VEGK+KGSFR SF+WLK +YTQ++YGWW
Sbjct: 63  TDPELQRKKRVASYKMYGVEGKVKGSFRNSFRWLKQRYTQVVYGWW 105

[Close]

BLAST of ClCG08G010030.1 vs. TAIR10
Match: AT2G19460.1 (AT2G19460.1 Protein of unknown function (DUF3511))

HSP 1 Score: 79.7 bits (195), Expect = 1.0e-15
Identity = 39/62 (62.90%), Postives = 48/62 (77.42%), Query Frame = 1


Query: 27  ESVKKGKSISGSSSKSWRFVGDPEFQRKRRVASYKMYSVEGKMKGSFRKSFKWLKDKYTQ 86
           ++ KKG+S   SSS SW FV DP+ QRK+RV SY+ Y+VEGK+KGSFRKSFKW+KDK  +
Sbjct: 58  QNPKKGRS---SSSSSWGFV-DPDLQRKKRVVSYRAYTVEGKLKGSFRKSFKWIKDKCNK 115

Query: 87  ML 89
           +L
Sbjct: 118 LL 115

[Close]

BLAST of ClCG08G010030.1 vs. TAIR10
Match: AT3G13910.1 (AT3G13910.1 Protein of unknown function (DUF3511))

HSP 1 Score: 72.4 bits (176), Expect = 1.6e-13
Identity = 37/60 (61.67%), Postives = 42/60 (70.00%), Query Frame = 1


Query: 26 QESVKKGKSISGS---SSKSWRFVGDPEFQRKRRVASYKMYSVEGKMKGSFRKSFKWLKD 83
          Q  +KK KS+  +   +S+SW F  DPE +RKRRVA YK+YSVE KMKGS RKSFKW KD
Sbjct: 39 QLKIKKSKSVPNADRAASRSWSF-SDPESRRKRRVAGYKVYSVEQKMKGSIRKSFKWFKD 97

[Close]

BLAST of ClCG08G010030.1 vs. TAIR10
Match: AT1G72720.1 (AT1G72720.1 Protein of unknown function (DUF3511))

HSP 1 Score: 65.5 bits (158), Expect = 2.0e-11
Identity = 29/66 (43.94%), Postives = 41/66 (62.12%), Query Frame = 1


Query: 27  ESVKKGKSISGSSSKSWRFVGDPEFQRKRRVASYKMYSVEGKMKGSFRKSFKWLKDKYTQ 86
           +S  K K  +    K ++ + + E QRK+RVASY +Y VEG++KGS +KSFKW K+  + 
Sbjct: 62  DSNNKSKRSNKVKKKGFKGLCEAEIQRKKRVASYNVYGVEGRVKGSMKKSFKWFKETCSN 121

Query: 87  MLYGWW 93
            +YG W
Sbjct: 122 AVYGLW 127

[Close]

BLAST of ClCG08G010030.1 vs. TAIR10
Match: AT3G05725.1 (AT3G05725.1 Protein of unknown function (DUF3511))

HSP 1 Score: 62.8 bits (151), Expect = 1.3e-10
Identity = 31/56 (55.36%), Postives = 40/56 (71.43%), Query Frame = 1


Query: 38  SSSKSWRFVG---DPEFQRKRRVASYKMYSVEGKMKGSFRKSFKWLKDKYTQMLYG 91
           SSS S  F G   DPE +RKRRVA YK+YS EGKMK + RKS+KW+K + +++++G
Sbjct: 68  SSSHSTLFKGWWNDPEIKRKRRVAKYKLYSAEGKMKITLRKSYKWIKIQCSKIIHG 123

[Close]

BLAST of ClCG08G010030.1 vs. NCBI nr
Match: gi|700192405|gb|KGN47609.1| (hypothetical protein Csa_6G364115 [Cucumis sativus])

HSP 1 Score: 152.9 bits (385), Expect = 2.7e-34
Identity = 73/80 (91.25%), Postives = 75/80 (93.75%), Query Frame = 1


Query: 14 MEIEKYYGPP-KSQESVKKGKSISGSSSKSWRFVGDPEFQRKRRVASYKMYSVEGKMKGS 73
          MEIEKYYGP  KSQ SVKKGKS SGSSSKSWRFV DPEFQRK+RVASYKMYSVEGKMKGS
Sbjct: 1  MEIEKYYGPSSKSQVSVKKGKSTSGSSSKSWRFVADPEFQRKKRVASYKMYSVEGKMKGS 60

Query: 74 FRKSFKWLKDKYTQMLYGWW 93
          FRKSF+WLKDKYTQMLYGWW
Sbjct: 61 FRKSFRWLKDKYTQMLYGWW 80

[Close]

BLAST of ClCG08G010030.1 vs. NCBI nr
Match: gi|1009134393|ref|XP_015884421.1| (PREDICTED: uncharacterized protein LOC107420071 [Ziziphus jujuba])

HSP 1 Score: 129.8 bits (325), Expect = 2.4e-27
Identity = 68/120 (56.67%), Postives = 77/120 (64.17%), Query Frame = 1


Query: 1   MDDERRS---SYGNSSMEIEKYYGPPKSQES-------------------------VKKG 60
           M+D  RS   SYG   M++E YYGPP    +                          KKG
Sbjct: 1   MEDYNRSKSYSYGGGMMQMETYYGPPPGAPTSYDLRSYSASYSQTQMGYNTNRDIKFKKG 60

Query: 61  KSISGSSSKSWRFVGDPEFQRKRRVASYKMYSVEGKMKGSFRKSFKWLKDKYTQMLYGWW 93
           KS SGSSS+SW F  DPEFQRK+RVASYKMYSVEGKMKGSFRKSF+WLKDKYTQ++YGWW
Sbjct: 61  KSTSGSSSRSWNFT-DPEFQRKKRVASYKMYSVEGKMKGSFRKSFRWLKDKYTQVVYGWW 119

[Close]

BLAST of ClCG08G010030.1 vs. NCBI nr
Match: gi|703091265|ref|XP_010094301.1| (hypothetical protein L484_000591 [Morus notabilis])

HSP 1 Score: 129.4 bits (324), Expect = 3.2e-27
Identity = 66/112 (58.93%), Postives = 78/112 (69.64%), Query Frame = 1


Query: 2   DDERRSSYGNSSMEIEKYYGPPKSQES--------------------VKKGKSISGSSS- 61
           D  R  SYG+  M+I+ YYGPP+S  +                    +KKGK+ SGSSS 
Sbjct: 3   DCNRSRSYGSGMMQIDNYYGPPRSFSTSHTQTQMGNDINNNNIRDLKMKKGKNASGSSSS 62

Query: 62  KSWRFVGDPEFQRKRRVASYKMYSVEGKMKGSFRKSFKWLKDKYTQMLYGWW 93
           K W F GDPEFQRK+RVASYKMYSVEGK+KGSFRKSF+WLKDKYTQ++YGWW
Sbjct: 63  KPWSF-GDPEFQRKKRVASYKMYSVEGKVKGSFRKSFRWLKDKYTQVVYGWW 113

[Close]

BLAST of ClCG08G010030.1 vs. NCBI nr
Match: gi|747040821|ref|XP_011100119.1| (PREDICTED: uncharacterized protein LOC105178320 [Sesamum indicum])

HSP 1 Score: 123.2 bits (308), Expect = 2.3e-25
Identity = 62/123 (50.41%), Postives = 76/123 (61.79%), Query Frame = 1


Query: 1   MDDERRSSYGNSSMEIEKYYGPPKSQ-------------------------------ESV 60
           M D R   Y + +M+IE YYGPP S                                + +
Sbjct: 1   MADYRSKFYSDGNMQIEPYYGPPSSARTDDLRSYSASYASASSSSSYHYAPPPVAPPQKL 60

Query: 61  KKGKSISGSSSKSWRFVGDPEFQRKRRVASYKMYSVEGKMKGSFRKSFKWLKDKYTQMLY 93
           KKGKS  GS+SKSW F  DPEFQRK+RVASYK+YSVEGK+KG+FRKSF+WLKD+YTQ++Y
Sbjct: 61  KKGKSTGGSTSKSWSFT-DPEFQRKKRVASYKVYSVEGKVKGTFRKSFRWLKDRYTQVVY 120

[Close]

BLAST of ClCG08G010030.1 vs. NCBI nr
Match: gi|565369945|ref|XP_006351591.1| (PREDICTED: uncharacterized protein LOC102597557 [Solanum tuberosum])

HSP 1 Score: 120.9 bits (302), Expect = 1.1e-24
Identity = 61/107 (57.01%), Postives = 73/107 (68.22%), Query Frame = 1


Query: 1   MDDERRSSYGNSSMEIEKYYGPPKSQE----------------SVKKGKSISGSSSKSWR 60
           MDD R  SY +  M+++KY+ P  S +                 +KKGKS SGSSSKSW 
Sbjct: 1   MDDYRSKSYADGRMQMDKYHEPQFSNDLRSVGAPPPAHHNKDLKLKKGKSTSGSSSKSWN 60

Query: 61  FVGDPEFQRKRRVASYKMYSVEGKMKGSFRKSFKWLKDKYTQMLYGW 92
           F  DPEFQRKRRVASYK+YSVEGK+KGS R+S +W KDKYTQ+LYGW
Sbjct: 61  F-NDPEFQRKRRVASYKVYSVEGKVKGSLRRSLRWFKDKYTQVLYGW 106

The following BLAST results are available for this feature:

BLAST of ClCG08G010030.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KFK3_CUCSA	1.9e-34	91.25	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G364115 PE=4 SV=1	[more]
W9R3W8_9ROSA	2.2e-27	58.93	Uncharacterized protein OS=Morus notabilis GN=L484_000591 PE=4 SV=1	[more]
M1AEQ2_SOLTU	7.9e-25	57.01	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400008197 PE=4 SV=1	[more]
A0A0D2RTX7_GOSRA	1.8e-24	52.03	Uncharacterized protein OS=Gossypium raimondii GN=B456_009G043500 PE=4 SV=1	[more]
M5XFG9_PRUPE	2.3e-24	55.56	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013495mg PE=4 SV=1	[more]

BLAST of ClCG08G010030.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G11970.1	9.6e-22	50.00	Protein of unknown function (DUF3511)	[more]
AT2G19460.1	1.0e-15	62.90	Protein of unknown function (DUF3511)	[more]
AT3G13910.1	1.6e-13	61.67	Protein of unknown function (DUF3511)	[more]
AT1G72720.1	2.0e-11	43.94	Protein of unknown function (DUF3511)	[more]
AT3G05725.1	1.3e-10	55.36	Protein of unknown function (DUF3511)	[more]

BLAST of ClCG08G010030.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700192405\|gb\|KGN47609.1\|	2.7e-34	91.25	hypothetical protein Csa_6G364115 [Cucumis sativus]	[more]
gi\|1009134393\|ref\|XP_015884421.1\|	2.4e-27	56.67	PREDICTED: uncharacterized protein LOC107420071 [Ziziphus jujuba]	[more]
gi\|703091265\|ref\|XP_010094301.1\|	3.2e-27	58.93	hypothetical protein L484_000591 [Morus notabilis]	[more]
gi\|747040821\|ref\|XP_011100119.1\|	2.3e-25	50.41	PREDICTED: uncharacterized protein LOC105178320 [Sesamum indicum]	[more]
gi\|565369945\|ref\|XP_006351591.1\|	1.1e-24	57.01	PREDICTED: uncharacterized protein LOC102597557 [Solanum tuberosum]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR021899	DUF3511

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
ClCG08G010030	ClCG08G010030	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
ClCG08G010030.1	ClCG08G010030.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG08G010030.1.cds1	ClCG08G010030.1.cds1	CDS

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021899	Protein of unknown function DUF3511	PFAM	PF12023	DUF3511	coord: 47..90 score: 8.8
None	No IPR available	PANTHER	PTHR33193	FAMILY NOT NAMED	coord: 1..92 score: 3.7
None	No IPR available	PANTHER	PTHR33193:SF8	GENOMIC DNA, CHROMOSOME 3, P1 CLONE: MDC16	coord: 1..92 score: 3.7