ClCG08G005170.1 (mRNA) Watermelon (Charleston Gray)

Overview
NameClCG08G005170.1
TypemRNA
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionRegulator of Vps4 activity in the MVB pathway protein LENGTH=409
LocationCG_Chr08 : 16309340 .. 16321480 (-)
Sequence length728
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TAAAGCTTGTGGATTTAAAATTCCAATCCGATTTAGAAAACAAAAGAATGAGAAGAATTTTGAATCCTCTTGTGGGAAGAAGTTTCAAGTCCTCTGGTTTCAGACGTTTGGTCCAATCTGCTTTCACGCGCCTTCAATCGCTGAAGAACTATCGCCATGGAAGATACTCCGAAGATCGCAACGACGTCGTTCGCCTCCTTCAAGATGGCCTTCCCAAACTTGCTCTCTCTCGTGTACGCTTCTCATCCTTTTCTTTTTCCTTTACTTTCCCACCATTTGTGTATCAATTTCCATTTAAAACTTTCCTTTTTTTTTTTTTTCCTCCTAATTTCCTTTTTGGCATTAAATAAATTGTTGGCTTAGAAATTTTTTTTTGTACTTATAAATTGGATCTATAATATTTTAAACAATATTAGGTGGGAAAAATTTTTAACTTCTTTCTTTCCCCTTAACTTTTCATTAATGACTCTTTTGCCCTCATACTCACACTCATACCTTTTCTTTTCTTTTTCTATATAATTAAACTTTTTTCTTTTTTTCTTTTTTTTTTTTTTTTGCCATTTTATGTTTCAACCATTCCTATTTTGTTTTCACTTCCTTTCCTACTTTTATTGTACCTCTATTTTTTTTCTACCTTTCATGCCTTCTTTTTCTTTTTCTTTTTCTTTTTCATTTAAATTTACATTTTCATTTTGTTATTAGATTTTTCAACGATTCCTATTTTGTTCTCGAGAGAAACATTGAAATGTGATCAAAGGAATAGAATTTAGAAGTTCATTTTTGTTGGATGAAGCGACATGGTTAGATTTTACGAAGGTACAATTTTTTTTAATAGCTTATCTGAAAAAGCATATGTAAAATTTAACTCAAAAAACTATTTGGAATTTTTCCTCTAATTAGATAGTTTATTATTAATTTGTTTTCTCAAGTAACAAACAAGTTCAATGTTGCGAAATGATTGATTTTATGTATGTTAAAAAAAAAAAAAAAAAAATCAATTGTATCAAGATTTCTATATCCAGCCAATCCAATTTTGTTTTGTTTTTTAAATTTTAAGAAGATATAATTATTTACAGAATGGAAATATAATTCACACAACTATTTAAAGTTTTTCTTTCACAAAAGTTCTTAGATAACTAATGTATATTTATATTATTTTAAAATTACATTTCACTATTGTTTACACCTTTTTATTTTTATTTGAATTCAATGTTTATGGTTAATATTTGAAAAGGTAAAAAATGTTCTTAAAGTAAATTTTTGTTTCGAATTGTTAAAAATTTTTATTGAAAAAATCAAAATAAAAAATTAATTGTTGTCCAATCTATAAAATTCTACAATGTTTTAGAAAATACGACATAGCTTCAAATTTTAAAAAAATAAAAAATAAAAAATAAAAAATCAAGTGCGTATCGTTATTAAAGTTAATGGTAATTTATTTTTACTCAAGACCATTTAAGATTATAAATGAATATATATTTTTCCACTTTTATCTCTTTATTTAATTTTAAACTTCATGTCTAATATTTATTAAAATTATATTTGCTCAACCATTTATATTTCACTTTATGAAATTATATTTCAAAGAGTTTCAACTACATCTAACACATTTCATATTCATCATGAATTAACTAATAAAACATACATATAGTCTTAATCATCATCTTTTTCATTACTTTTAAACTTCTCATTCGATATTTATCCTATTTAAATTTAAATAAAAGTATATTTATTTAAAATTTTATATCCTCTAACCAATATATAATAAATGACAAAACCGTTGGATATTGTACTCTTTAAATTTTTACGATAATATCTTCTTTTTTTTCGCCTTAAATTTGACTAGTTGTAACAATTTTAACCTTAACCTTTCAATTATCAATTTAAACTTCAAACTTGAATAAGTGTATCAATTTACACTCCTAGTTTAGTTTTGGTTTCAATCACCATTAGATCTATAGGTTGATGACTCAAACAACTCGATCAATCCAATTCGTATGATTTTTGGTTGGGTTGGATTTAAATAAATGAAAACTTTATGGGTTGAGAGTTATTTCATGGGTTCACCTAAAATATATGAAATAACCTTAACTTATTATTAATTCCAAAAAGTATGTTTTTCACTAACAATACAGTTATATATACATATATTTATGGGTTGTTTTCAAATATAGTGAAATAAGCTAACTTATTTACAAATATAGCAAAATATCATTTATCAGTGTCTATCACTGATAGACAATAATAGATGATAGTAGTCTATTAATGTCTATCATTGTCTATTACTGATGGGTAAAGACATTTTGCTATATTTGAAAATATTTTCAACAATTTTGTTATTTAAAACAATTATTATCCTATATTTATTTAAATGTTACGTAATTACATGATGTTTTTAGATTATTTATTCTCCAACAACTATTAAAATATTTTTTAACACTTCGGACAGAATATCTTCAATATATAAATTGAAATTGAGTTGTTAATCTTAATTCAATACATTAGAATAATTAAATATCTTCTTTTACATATAAACATTTTACTTCTCCTTAAAACAAATTTTTAAATAATGACTTAAGTAAGCCGACTAGCCGAACCCAAATGTTTCATGGCTTGGTCGGGTTGTGTTTATTATTTAAGTAAGGGTTATGGGTTGAAGAAACTTATAATCTGTAGAATTGGGTTGGGTCTAAGAAGTGTTTCAACCCACAAATTATAACACCCCAAGTTTAGGAGAGAGACATGAATGAACCGAGTCACATCCGAATGAGAGGGATCCTAAGAATATGAAAGTATTGCTAAGCTTAAAAGAAGTTGAAAGTTACTACGTATTACCAACAAGATGTACCTACCTTTTCGGTTGCTCAATCATAGGAATTTCATAGTTAAGCATACTTAGCTTGAACCAATCCTATGTGTGGGTGGCCTCTTGGAAATTTTCCTAGGAAGCATGTGAGTGAGGACAAAGCATGCTAAAAGAACCTGTGTTAGTTTGCCTTCAATCGCGTTCTCATGTTCTCCCTTAATGTCGTTACCATCAATGACGTCCAAGTGTGAGAAAAAATCTAGTTGAGGAGTTTGAGCTTAACTTAAATGTGGACATGTTGGAACAACTACTCTGATAGACAGCAATTAACAGTACGAACTGCAACCATCAATAACAAACAACCCGGACAGACCCTACAAAATAGAAACGCATGATAGGCTGAGTCGCGAAGCTCGCTCTCTTTAAGATGTTTTGTGGCTCTATCAGAGTACAAGCAGTTCTTCAAGATACCACGAAGTCCCCAAGATAAAACAGTCTTAGCGGTCAATCGAACTTGTGGAGGAGAGTTGTCCTCCCAGCTTAACATGTGGCAGCTTGATGTCCAATGAACGTACACGTACGGCTAGGAGGGAAACCGACGACTATTCTCAACCTAACACTTGAAGAATCTTGTTGACTGTTCTCGACTGAACACATGAACAGAGGTTCAAAAAAATATCTAAAAAATTGTTATATAAAAAATTCTTTCTTTCACGCCTCGCCCATCCTGACAACGACGACGGCATGCATCCTCACTCTTTCTAAAACTCAAGTTTCCCCTTGGGCTCAAAGTTAAATGGGTAAGGGGGAGTTAATAAAGAAGAGTCCCACTTCTAAAATAACCAATGTGGGATTCGTAAAATACCAAATCTCCTTTATTCAAAACAAATTTTTTCACTAACAATTCCCCACTTGAAAAACTTTTTCGAACACAAGAAATAAATAATTCATTGAGCAAAATATGTAACGTTGTGCATAAGCAAAGGTGTCTTGTGACTTGAACCTTTACATAGTGAAGATGATCCAGAACAAACCAGATTAACCCTTGGTTTTAAACTCTATCTCCAACAACATTTTACACATGGCATTACTAGGGTGTAGTTCGTAAACTCGTGTTTTAAGGCCTTGCACATGTATCCCAGTGTAGTGAACACTCTAGAGAATTTGCCTATTATTCCATAGGAAGCAACTCTCACTTCCACATTCACGTAGGTGAGTCTATCAAGGGTACTCCTGCAGCTAGGTACTCCACCTGACATCAGGTATAGATCTCATTAAGAACTAAGTTCAACCTTACATACGCTTCAAGATATCATACCGAGACTCTAGGTCATAGGAAGGGAACTCGATGTTTACTTTGCATGATTTACTTCATATCACTTGTGATCAATTATTACCCTTTGAACCTATTTTTTGGGATCTCCAATCTGCTGGTTGGGTTTACCTCACAGGTGATTCATCTCTCTATAGGCAAGAGTCTCATCCTTTCTGAGGTTTTGAAAACCTTTTCTCTGGCCAATCCTTTGGTCAAATGATCTGCCAAGTTATCATCAGTCCTTATATGATCCACTCTAACAACATCAGTAATGAGAAGCTCTCTAATGGTACTGTGCTTATGACGTATTTGTCGTCTCTTTCTGTTGTAGTAACGTTTCTGAACTTTTACGATTGCTGCAATACTATCGCAATGGATCAAGATGGCTGGTACCGGTTTTTCCCATAAGGGAATCTCTGATAGAAGACTTCTAAGCCAACCTGCTTCTTCACTGGCGTTGCCAGTGCTATCATTTCTGACTCCACATTGACTGAGCTAAGATTGTCTGTTTTTTAGATTTCCAGGAAACAACTCCACCTGTTATATTGAAGATATAGCCACTTGTAGCTTTTGAGTCATCTGAGAGGGAATTCCAGTCTGCATCGCTGTAGCCTTCTAGAACAGCGGGAAACTTCTGATAGTGCAATCCTAGGTTTTGGGTTTTCTTTAAGTACCTCATAACTCTTTCTATAGCACTCTAGTGCTTTATACTAGGTCTGCTTGTAAACCTACATAGTAACCCTACAACATAAGCTATGTCAGGTCTAGTGCAATTAGTAGCATACCTCAAGCTGCCTATGATGCTCGCATACTCGAATTGATTAACACTGTCACCAGTGTTCTTGAACAACTTTACACTAGGGTTGTAGGGTGTACGCGCTGGTTTACGATCTAATTAGTTGTATTTCCTAAGAATCTTTTCTACCTATTTAGATTGATTTAGGGAAATTTCCTTTTTGAACCTAGTAACTTTTATGCCTAAGATCACATTGGCTTCTCCTAAATCTTTCATATCGAAGTTTGCACACAATATGGATTTCATATCATTAATGACGTGCAGGTTCGACTCAAATATTAACAAGTCATCTACATATAAACATAAGATTGTGTAAAGACCGTCCTCACTCTTATAGTTGATGAATTTATCACTTTCATTAACCTTGAAACCTTTGGAAAGGATTAGGTTATCAAACTTTTCATGCCATTGGTTAGGAACTTGTTTTAAGCCATAGAGAGATTTATCTAACTTACAGACTTTGTTCTCCTGACCATGGATCACAAAACCTTCTGGTTGTTCCATATAAATCTCTTCTTCGAGATCACCGTTTAGGAAGGCAATCTTAATGCCCATATGATATACCATGAGGTTGTTTAAAGAAGCAAGAGAGAACAAAACACAGATAGACGTAATTCTCAAGACAGGGGAGAAGGTGTCGAAGGAGTCTGTGTTCTCTCTCTGTCTAAAGCCCTTGGCCACCAATCTAGCTTTAAACTTGTCTATTGATCCATCAGGCTTAAGTTTTTTTCTTAGTATCCACTTACAACCTATGGCCTTACAGCCTAAAGGGAGGTCTACTAGGTGCCAAGTCCTATTTGACTCTAGAGAATCCATCTCGTCATTTATCGCTTCTTGCCATAAGTTGGCACCGACAGAGGACAAGACTTCTTTTAGGTCTTTTGGGTCTTCTTCTACGTTAAAGGTTTGGAAATCATCCCCAAAGCTTTTAACAGTTCTAGACCTTTTACTCCTTCTCAACTCCAAGCTGAGATCTTCAAAGGAGATAGGATTTCTAATTATAGGGCGACTATTGGAGCTTGTGCCCCCATTATTTCTAGATTTAAAAGAAAATTTATCCTCAAAGAAGTCAGCGTCATTTGACTCAATGACCACTCGATTAGCTAGATCATAGAACCTATAGGTTTTACTATTTACTGTGTACCCTATAAATACACACTTATAGCCTCTATTGGCAAGTTTTCTTCTTTTGGGATCAGGAATCCTTACAAAGGCTAAGCAACCCCAAGTTCTAAAATAGGATAGGTTAGGTCTTTTATTCTTAAGAACTTCGTAGGGTGAAGTTGAGCTTTTAGACTTAGATATTCTATTTAGAACGTAACAAACGGTAAGGATTATTTCATCCCACCAATAAGAAGCAGCTTCTTAATTCAAAAGAATAGCAACTACTAGCTCAGCTAGAGTTCTATTTTTCTTTTCGGCTTTACCACATTCATTTCAGGAGAGTGAGGTGCAGTTTTTTCATGTATTATTCCACGTGATTTATAAAAATCGTTAAAACTGTCTGAGTCATACTCAGTTCCCCCATCACTACAAAGTCTTTTTTACTTTTCTATTATGCTGAGTTTCTAATTCATTCACGAATTGTTTAAAGGCATCAAAAGCATCATTTTTATTTCTCAGCAAATATATAAAAGTAAAATCAAAGCAGTCATCAATAAAGGTGATAAAATATCATTTACTATTTCTAGTCAAGATGCCATCAAATTCATATATATCTGAATGAATCAAGTCTAGAGGCTCAGTTTCCCTAAGAGCAGATTTATGCGACGTTTTAGTGATCTTAGCCTGACTACAATATTTGCATTTATCAAAATCATTCAGAGATATCTTAGGAATCATTTCCAACCTACTCATGTTACTAATTATTCGTTTGTTAACGTGACAAAGTCTAGCATGCCAAATATTAACAGAACACAACATATACACAAAAGAATTCATTTTATTAGCAATCAAGTCAATTTAAACATGCCTTCCGTAGCATATCCTTTTCCAATAAATACATTGTTTTTAGTAAAAGTAAATTGGTCTGCCCTTATCGTTTGAGTGAAGCCGTCCTTGTTGAGGAGGTATCCCCAGACTAGATTCTTCCTTATCTCTGGAGTGTGCAGGACCTCCCTAAGAGTGAGAGTCTTCCCAGAGGTAAATTTCAACTCCACCTCGCCAATTCTAGCAACTTTCATCAAGTGATGATCCCCCAACAGAATATTCTTATCTTTAGTTTCATTATAAGTTTTAAATAAACTAAGGTCGTGACAAACATGGCGCATAACGCCAGTGTCTATCCACCACCCCTCAGAACTACCGATCACATTTACTTCTGTGATCATGGCCACTAATTCCTCTTCAGTTAGGTTCACCTGCCCAGTAGGATGACGCCTATTCCCACAGTTCCTAGTCATATGTCCAGGTTCATTATAGTTAAAGCAAAGGAACTATATTATTTCTCCTGTGTTTCTTTTTGTTCTGTTGGTTGTTGGATCCGCGGTTCTAACCCTTTCTCTAAGTCCCCTTCGACTTCTGGTCAAACTTTACAGCTGCTAGAGCGGGGTTCCTTGTCACAAGATTTATCCCTTCCCTCTAGTCCTCCTTTCGAGCCTTCTCCTCTATCCTCAGCCGGGTGATTAGACTTTCCAAGGAGAATTCCATGGTTTTGTGCCTTAGAGTGTTTTTGAAATCCTTTCACAATGGATGTAGCTTGTCAATAATAACAGCAATTTGAAATTGCTCGTCTAGAGGCATACTTTCACTTATTATTTCGTGGGCAATTTTCTACTGTTCATGTGACTGGACTTCCACTGACTTGTCATCCGTCATTTAGAACTTCATGTAGTAGCTGACGGCATACTTCTTTGAACCAGCTTCTTCGGTGTCGTAGTTCTTCTGTAGGGCATCCCATACTTCTTTTGATGTTTTCATCATGTTGTAATAATAATAAAGATCATTAGTCAAACCATTTAAAATAAATTTTTTGCACATAAAATCTTTTTCCTTCCACTCAGCAGCATCCTTTAGTTGATCTTTGGTTGGATTGGTTTTCGGGACAGCGGCGGATTCGTGATACAGAGGTCAACTACTTTCTTGACCGTCAGGAATAACAGCATCTTTTGTTTCCACCGTTTGAAATTCGCCCCTTCAAAGCGGAAAGGACGGTTGAGATCAGAGGACATGATGTCGTTTTAGGTTGACAGTGCCATCACAACAGCGGTTGATCATTTTAAAATTGTTGGAACAACTACTCTAATAGGCAGCAATTAACAGCACGAACTGCAACTGTCAGTAACGAACGACTCGAATAGACTCTTCAAAATAGAAACTCATGACAGGCTGAGTCGCGGAGCTCGCTCTCTTTAAGATGTTTCGTGGCTCTGCTAAAGTGCAAGCAGTTCTTCAAAATACCACGTCGTTCCCAAGATAAAATAGCCTTAACAGTCAACCAAACTTGCATCTAGACCGATTGATAATGCTAACACCCTTCTAATATTTTGCTAAAAAACGTGAATAAAATAAAGGTTTTACAAATAAATTATTTTAGAAAGAAGTTTTTGTGAGGAGAGTTGGGAGATGAGATGTGGGAAGGGAAGATGACAAAAAGAAGTGAGGAAGAAGTGAGGGGAGGAAGCAGCATTTATAGTGTTGGTGACCAACGGTCAGATGCACTACTTCCTCCCAGCTTGAGGAACACTGTTCTCAACCGAACATGTGGACAAAGGTTCAAAAAAATATCTAAAAAATTTTTATATAAGAAATTCTTTCTTTCACGCCTTGCCACGCCCGTCTGGATGACGGTGGTGACGCACGTGCGAGTGGAGATCCTGATAAACCCAGCTTGCACTATCTCTTCACCCTTTCTAAAACTCGGGTTCCCCCTTGGGCCTAAAGCCAAAGGGCTAAAGAGGAGTTAGTAAAGAGGAGTCCCACTTCTTGTGGGATTCTTAAAATATCAAATCTCCTTTATTCAAAACAAATTTTTTCACCAATAGGACAAGAACAAAAAAAAAAGGTGGTGATGGACAAAAAAAAGCCCACGAATTCAATAAACTAGTCATATTCGACCTTGTCAACCCTGTCGACGATCTAACTATAAAAGAGGAAGGTGACATCAATTTCAAAGAGGAAGGAGAATAGAGATTTCAGTAACGGAGATTTTGAAAGCCTAATACTCATTGCGGTAGATATTGCACAAATTGAACTAGAGGCCGACGTGAAATAAAAGATCAACAACAAACCAATACTCTCAAAGATTTTGAAAATGGGAGTAGTCAATTGAGGAAAAAAACTAGTGCAAATAAGCTTTGTTTCTACCAATAGCCGATAGACGAGTAGAATCATGCTCTAAAATTGGAAAACTCTTCATAAATAAGTGAAAAAAGTAGCACAGAAGATGAGAAGTGAAAAAATAATAATAATAATAAAGCTCTATCCTAAAATTGAAAAACACTCTAACGAGTCTACTATAATTTTCTCCCTCAACCCTTTTTTTTAAAAAAAAATAACAAGTACATGAGAAACTTGTGGCATTTTGAATATGAGTTGGAACTCTTTTAAACGATGATTGAAGCATAAACTTAAATCGAGTATGTGAGTTGATACACTTATTTAAGTTTGAAGTTTAAATGAATTAAATCGAAAGTGTAGAGTAAAAATTGACACAATTTTATCGGGTGATTGTCTTGGCTATATAATAAGGAAATTTTTTTTAAACAATTTTTCTACACAAATTATTTTTTATAATAAAAAATTTAATAAAAATTCATCCAATTAATCATTTCTTTTTCATTCTTAATTAATTATAATAATTTTGTTCATAAATAAAAAAATTTTAAAAAAACTATGATATACTAATATATACATGCAGAAACACACATCACATCAGCTTTCTAGATGTTTTTCTTCAGGGACGTATAAAAGTAGCCCACAACCTAACTTTTTTAGCTTCCTCTTCTGAATTGTCTCGGATTAGAAAGATGTCCTTCTAGCTTTCGTTTATTTCCCTTGTTCTATAAGGGATTAATTCATTTCTGTTATTATTATTTTTATTTATTTTTTTATTTTATTTTTTTTTTTTTTTGAATAGAAAGACTTTCTAAATGTTGAACTCAATTTCACATTTTCAATTTCTAGAAATTCCAAGTTTGGTTATCACATTTGAATGATGTTTGCAGTGCGAGCAAATGATTAAACATCAAAATCTTTTGGATGCTTATGGAATGATTGAAGGATATCTCAATCTCTTGGTAGAAAGGATCAACCTCCTTGGACGTGGAAGGTTTTGTTTGCATTTTTATTTTATAATCATTTTTCATTTTCAAATCAATACGATTTCAACAACATTTTCTAGTCTTTTTTCATTTTTATCACATATTTTGTGAATAATGATTTTATTTTTTACGATAGTATCATTCATCGATTATATTGATTAAAATCAAATTGAAAAAAAAATATATTTTTAAAACAAAATTCAATTATAGCTTTCCATACCAAATATTTCAATTTTCATATTTATTGGAAAAAAAAAAAAAAAGAGAGGTTACTTTGGGTTTTTTCTACCTTTTATTTTGACAAAGGTTTTTTTTTTTTTTAATTTTACGAAGAGAATGCCCCGATGAATTGAAGGAGGCAGTGTCAAGTGTAGTATTTGCAGCTTCAAGATGGAAGGATTTTCCCGAACTTGAAGACATTAAATCAATATTGACTTCTCAATTTGGCAAAGAGTTCACTGGTCGTGCTGTTGAATTACGCAACAACAATAGTGTAAATGACTCGGTAAGAATCATTTTCTCATAACATTTTAGTTTCGTTTGATAACAATCTCGTTTTGAATTTTGTATTGGGTTGATATTTTTCATTATTATTTGATAGATAATGCAAAAACTATCAACAAGGAAGCCAAATATGGAGAGTAAAATGAATCTTCTTAGAGTCATTGCTTCTGAAAATGGTATTACTTTGCAATTCGACGAACAGGTAAGCCACCCTATAAGAATAACTAAAGAACGTACAAATATTATTATCCAAAAAATGAGCCAATAAATTTTAAAGCTCGCCAATCAATATTCTTTTTTTAATTTTAAATTATAATGAATCTCTAATATTAATCTTCGTGTCATTACTTTTTTTAAATTTTATTTATAAAATTTGCTATTTTATTCTTTATGTATTGCAGTTTTTTTTTTAATTAAGTATTTCCTGTCACTAAATATAAAAAGTAAGGTGGTTGTATTATCATATATTGAACAAAAAAGGTTGTCGTATGAATTTAAAAACAATTTTTGATAAAATAACAAATCATTCTAGGCACGTTACTAGCTTTATTAGAACACATGAAATGTTTGCTTCTTGTTGGCTAAATATATGTTATGGTTCTTGTAATTTGAATATATTTTTTTTAATTTAGCTTTTACTATTTAAAATGATTTATTCAAATTGATTCTTTTATGTGTTAAACATTTTTCAATTTAGTCTATCCTAGTTAGCTAAAGTTAGTTTACCATTCATTTATATGACTTACATGCAAGTATTATTACTCAATTTTATATTACTCACAGGTGAGGGATTAGTTGCAAATTACTTTAAAAAAAAAAAAAAAAAAAAAAAATGGGATTAAATTGAAGCAATAGGACTAAAATATATATTAAATTTTTTTTTTTAATTTTATGAGTGGATATTATAATTTTGTTTCATGAAATTAAAACATAAAATGCAATTTAGTAAAATGAGTCAAAATATTTATAAATATAGAAAAATTTCAATGTCTATCAGCTAACGTTGATAGACATTGAAATTTTTCTATAGTTGTAAATAATTTGATATTTTTTCTCGTTATAATAGTTTTCTTTTAGCTAATGTAATTTAGATTAAAATATTATTTTAGTGCTTGGGGTTCTATTTCATTCTAGCCCATATCCTTTGAAGTTAATTTTATTGAGAATAAAATAGATGTACGTGTGTGTATATAACTAGACACTAAGGCTAAATGATATATTTAGCCTATTACTAATCTATTCAATTGATTAGGAATTTAGATATTAATTAGAATGATCATACAAGTTATTTATTTTTATTCAATTAATTATTTAAATAATTCTTTTTTTTTTTTCCTTGAAACAGGGTGAGTTATCCAGTTCGATTCAAAATAGAAAACGAAGCAGACAACAAAACAAAGGTATGGGTTTGACCACAAGCTCATATCAAACCCGCAGCTCAAGTCGCAAACATAGACGT

mRNA sequence

TAAAGCTTGTGGATTTAAAATTCCAATCCGATTTAGAAAACAAAAGAATGAGAAGAATTTTGAATCCTCTTGTGGGAAGAAGTTTCAAGTCCTCTGGTTTCAGACGTTTGGTCCAATCTGCTTTCACGCGCCTTCAATCGCTGAAGAACTATCGCCATGGAAGATACTCCGAAGATCGCAACGACGTCGTTCGCCTCCTTCAAGATGGCCTTCCCAAACTTGCTCTCTCTCGTTGCGAGCAAATGATTAAACATCAAAATCTTTTGGATGCTTATGGAATGATTGAAGGATATCTCAATCTCTTGGTAGAAAGGATCAACCTCCTTGGACGTGGAAGAGAATGCCCCGATGAATTGAAGGAGGCAGTGTCAAGTGTAGTATTTGCAGCTTCAAGATGGAAGGATTTTCCCGAACTTGAAGACATTAAATCAATATTGACTTCTCAATTTGGCAAAGAGTTCACTGGTCGTGCTGTTGAATTACGCAACAACAATAGTGTAAATGACTCGATAATGCAAAAACTATCAACAAGGAAGCCAAATATGGAGAGTAAAATGAATCTTCTTAGAGTCATTGCTTCTGAAAATGGTATTACTTTGCAATTCGACGAACAGGGTGAGTTATCCAGTTCGATTCAAAATAGAAAACGAAGCAGACAACAAAACAAAGGTATGGGTTTGACCACAAGCTCATATCAAACCCGCAGCTCAAGTCGCAAACATAGACGT

Coding sequence (CDS)

ATGAGAAGAATTTTGAATCCTCTTGTGGGAAGAAGTTTCAAGTCCTCTGGTTTCAGACGTTTGGTCCAATCTGCTTTCACGCGCCTTCAATCGCTGAAGAACTATCGCCATGGAAGATACTCCGAAGATCGCAACGACGTCGTTCGCCTCCTTCAAGATGGCCTTCCCAAACTTGCTCTCTCTCGTTGCGAGCAAATGATTAAACATCAAAATCTTTTGGATGCTTATGGAATGATTGAAGGATATCTCAATCTCTTGGTAGAAAGGATCAACCTCCTTGGACGTGGAAGAGAATGCCCCGATGAATTGAAGGAGGCAGTGTCAAGTGTAGTATTTGCAGCTTCAAGATGGAAGGATTTTCCCGAACTTGAAGACATTAAATCAATATTGACTTCTCAATTTGGCAAAGAGTTCACTGGTCGTGCTGTTGAATTACGCAACAACAATAGTGTAAATGACTCGATAATGCAAAAACTATCAACAAGGAAGCCAAATATGGAGAGTAAAATGAATCTTCTTAGAGTCATTGCTTCTGAAAATGGTATTACTTTGCAATTCGACGAACAGGGTGAGTTATCCAGTTCGATTCAAAATAGAAAACGAAGCAGACAACAAAACAAAGGTATGGGTTTGACCACAAGCTCATATCAAACCCGCAGCTCAAGTCGCAAACATAGACGT

Protein sequence

MRRILNPLVGRSFKSSGFRRLVQSAFTRLQSLKNYRHGRYSEDRNDVVRLLQDGLPKLALSRCEQMIKHQNLLDAYGMIEGYLNLLVERINLLGRGRECPDELKEAVSSVVFAASRWKDFPELEDIKSILTSQFGKEFTGRAVELRNNNSVNDSIMQKLSTRKPNMESKMNLLRVIASENGITLQFDEQGELSSSIQNRKRSRQQNKGMGLTTSSYQTRSSSRKHRR
Homology
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BLAST of ClCG08G005170.1 vs. Swiss-Prot
Match: IST1L_DICDI (IST1-like protein OS=Dictyostelium discoideum GN=DDB_G0289029 PE=3 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.1e-12
Identity = 52/170 (30.59%), Postives = 88/170 (51.76%), Query Frame = 1 

Query: 10  GRSFKSSGFRRLVQSAFTRLQSLKNYRHGRYSEDRNDVVRLLQDGLPKLALSRCEQMIKH 69
           G S+ S   +  ++ A +R+Q LKN +     +++ +V  LL+    + A  R E +I+ 
Sbjct: 5   GPSYDSYKLKVQLKLAVSRIQILKNKKANIVRDEKRNVAELLRKKNEESARIRVETIIRD 64

Query: 70  QNLLDAYGMIEGYLNLLVERINLLGRGRECPDELKEAVSSVVFAASRWKDFPELEDIKSI 129
           + L++ + +IE    LL  RINL+    E P E+KE++ ++V+++ R +  PELE IK+ 
Sbjct: 65  EYLIECFQIIEVLCELLHARINLINATTEMPLEMKESIFTLVYSSQRIQ-IPELEQIKNQ 124

Query: 130 LTSQFGKEFTGRAVELRNNNSVNDSIMQKLSTRKPNMESKMNLLRVIASE 180
           L +++GK     A     +  VN  I+ KLS   P+       L  IA +
Sbjct: 125 LKAKYGKGLENEA-NCHCSTHVNPKIVHKLSYATPDPSIIFQTLSEIAEK 172

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BLAST of ClCG08G005170.1 vs. TrEMBL
Match: A0A0A0K949_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G031970 PE=4 SV=1)

HSP 1 Score: 317.0 bits (811), Expect = 1.9e-83
Identity = 159/227 (70.04%), Postives = 196/227 (86.34%), Query Frame = 1 

Query: 1   MRRILNPLVGRSFKSSGFRRLVQSAFTRLQSLKNYRHGRYSEDRNDVVRLLQDGLPKLAL 60
           MR+I+  ++GRSF SS F+R VQS+FTRL+SL ++R  R+SED N+VV LLQ+ L +LAL
Sbjct: 1   MRKIMKRVLGRSFSSSCFKRSVQSSFTRLKSLTDHRRRRFSEDLNEVVSLLQEDLQELAL 60

Query: 61  SRCEQMIKHQNLLDAYGMIEGYLNLLVERINLLGRGRECPDELKEAVSSVVFAASRWKDF 120
           SRCEQMIKHQNL+DAYG+IEGYLNLL+ERI+LLGR RECPDELKEAVSSV+FAASRWKDF
Sbjct: 61  SRCEQMIKHQNLVDAYGLIEGYLNLLIERIHLLGRERECPDELKEAVSSVIFAASRWKDF 120

Query: 121 PELEDIKSILTSQFGKEFTGRAVELRNNNSVNDSIMQKLSTRKPNMESKMNLLRVIASEN 180
            EL D+KSI TSQFGKEFT RAVELRNNN VN SI+QKLS +KP+ +SKMNLL++IAS+ 
Sbjct: 121 TELGDVKSIFTSQFGKEFTARAVELRNNNRVNQSIIQKLSAKKPDTKSKMNLLKLIASDK 180

Query: 181 GITLQFDEQGELSSSIQNRKRSRQQNKGMGLTTSSYQTRSSSRKHRR 228
           GI ++ +E+G+LS SIQ RKR R++NK +  TTSSYQTR+SSR+ +R
Sbjct: 181 GIVVKLNEEGKLSKSIQIRKRGREKNKVVTATTSSYQTRNSSRRPKR 227

[Close]
BLAST of ClCG08G005170.1 vs. TrEMBL
Match: A0A0B2SE71_GLYSO (IST1-like protein OS=Glycine soja GN=glysoja_044795 PE=4 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 1.1e-48
Identity = 105/207 (50.72%), Postives = 147/207 (71.01%), Query Frame = 1 

Query: 1   MRRILNPLVGRSFKSSGFRRLVQSAFTRLQSLKNYRHGRYSEDRNDVVRLLQDGLPKLAL 60
           M + L+ L+GR+FK S F+ +V  A +RL  LKN R  R    R+DV+ LLQ G  + A 
Sbjct: 1   MGKKLDALLGRTFKVSKFKAIVNLAISRLAVLKNQRQARLRHARSDVLELLQLGHQERAS 60

Query: 61  SRCEQMIKHQNLLDAYGMIEGYLNLLVERINLLGRGRECPDELKEAVSSVVFAASRWKDF 120
            R E +IK QN+LD YG IEGY NLL+ER++L+ + RECP+ELKEA S +++AASR  DF
Sbjct: 61  LRVEHVIKDQNMLDVYGRIEGYFNLLIERVHLIEQERECPEELKEAASGLLYAASRCGDF 120

Query: 121 PELEDIKSILTSQFGKEFTGRAVELRNNNSVNDSIMQKLSTRKPNMESKMNLLRVIASEN 180
           PE++ I+ ILTS+FGKEF  R++ELRNN  V+  ++QKLST+ P++ES+M +L+ IASEN
Sbjct: 121 PEIQQIRVILTSRFGKEFAARSIELRNNCGVHPQMIQKLSTKMPSLESRMKVLKDIASEN 180

Query: 181 GITLQFDEQGELSSSIQNRKRSRQQNK 208
           GI LQ +   E S S++ +    +QN+
Sbjct: 181 GIVLQLE---ETSVSVEEQSSVEKQNQ 204

[Close]
BLAST of ClCG08G005170.1 vs. TrEMBL
Match: C6TEJ2_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_01G083000 PE=2 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 1.1e-48
Identity = 105/207 (50.72%), Postives = 147/207 (71.01%), Query Frame = 1 

Query: 1   MRRILNPLVGRSFKSSGFRRLVQSAFTRLQSLKNYRHGRYSEDRNDVVRLLQDGLPKLAL 60
           M + L+ L+GR+FK S F+ +V  A +RL  LKN R  R    R+DV+ LLQ G  + A 
Sbjct: 1   MGKKLDALLGRTFKVSKFKAIVNLAISRLAVLKNQRQARLRHARSDVLELLQLGHQERAS 60

Query: 61  SRCEQMIKHQNLLDAYGMIEGYLNLLVERINLLGRGRECPDELKEAVSSVVFAASRWKDF 120
            R E +IK QN+LD YG IEGY NLL+ER++L+ + RECP+ELKEA S +++AASR  DF
Sbjct: 61  LRVEHVIKDQNMLDVYGRIEGYFNLLIERVHLIEQERECPEELKEAASGLLYAASRCGDF 120

Query: 121 PELEDIKSILTSQFGKEFTGRAVELRNNNSVNDSIMQKLSTRKPNMESKMNLLRVIASEN 180
           PE++ I+ ILTS+FGKEF  R++ELRNN  V+  ++QKLST+ P++ES+M +L+ IASEN
Sbjct: 121 PEIQQIRVILTSRFGKEFAARSIELRNNCGVHPQMIQKLSTKMPSLESRMKVLKDIASEN 180

Query: 181 GITLQFDEQGELSSSIQNRKRSRQQNK 208
           GI LQ +   E S S++ +    +QN+
Sbjct: 181 GIVLQLE---ETSVSVEEQSSVEKQNQ 204

[Close]
BLAST of ClCG08G005170.1 vs. TrEMBL
Match: C6TIN4_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 1.1e-48
Identity = 103/210 (49.05%), Postives = 149/210 (70.95%), Query Frame = 1 

Query: 1   MRRILNPLVGRSFKSSGFRRLVQSAFTRLQSLKNYRHGRYSEDRNDVVRLLQDGLPKLAL 60
           M + L+ L+GR+FK++ F+ +V  A +RL  LKN R  R  + R+D++ LLQ G  + A 
Sbjct: 1   MGKKLDALLGRTFKAAKFKAIVNLAISRLAVLKNQRQARLRQARSDILELLQIGHLERAS 60

Query: 61  SRCEQMIKHQNLLDAYGMIEGYLNLLVERINLLGRGRECPDELKEAVSSVVFAASRWKDF 120
            R E ++K QN+LD Y  IEGY NLL+ER++L+ + RECP+ELKEA S +++AASR  DF
Sbjct: 61  LRVEHVMKDQNMLDVYVRIEGYCNLLIERVHLIAQERECPEELKEAASGLLYAASRCGDF 120

Query: 121 PELEDIKSILTSQFGKEFTGRAVELRNNNSVNDSIMQKLSTRKPNMESKMNLLRVIASEN 180
           PE+++I++ILTS+FGKEF  R++ELRNN  V+  + QKLSTR P++ES+M +L+ IASEN
Sbjct: 121 PEIQEIRAILTSRFGKEFAARSIELRNNCGVHPQMTQKLSTRMPSLESRMKVLKDIASEN 180

Query: 181 GITLQFDEQG---ELSSSIQNRKRSRQQNK 208
           GI LQ +E     E  SS++ + R   + K
Sbjct: 181 GIVLQLEETSVSVEEQSSVEKQNRHESEKK 210

[Close]
BLAST of ClCG08G005170.1 vs. TrEMBL
Match: A0A151QR33_CAJCA (IST1-like protein OS=Cajanus cajan GN=KK1_046528 PE=4 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 1.9e-48
Identity = 104/206 (50.49%), Postives = 145/206 (70.39%), Query Frame = 1 

Query: 1   MRRILNPLVGRSFKSSGFRRLVQSAFTRLQSLKNYRHGRYSEDRNDVVRLLQDGLPKLAL 60
           M + L+ L+GR+FK+S F+  V  A +R+  LKN RH R    R+DV+ LLQ G  + A 
Sbjct: 1   MGKKLDALLGRTFKASKFKATVNLATSRIAVLKNQRHARLRHARSDVLELLQLGHQERAS 60

Query: 61  SRCEQMIKHQNLLDAYGMIEGYLNLLVERINLLGRGRECPDELKEAVSSVVFAASRWKDF 120
            R E +IK QN+LD Y MIEGY NLL+ER++L+ + RECP+ELKEA S +++AASR  DF
Sbjct: 61  LRAEHVIKDQNMLDVYDMIEGYCNLLIERVHLIEQERECPEELKEAASGLLYAASRCGDF 120

Query: 121 PELEDIKSILTSQFGKEFTGRAVELRNNNSVNDSIMQKLSTRKPNMESKMNLLRVIASEN 180
           PE+++I+ +LT++FGKEF  RA+ELRNN  V+  I+QK+STR P++E +M  L+ IASEN
Sbjct: 121 PEIQEIRGVLTTRFGKEFAARAIELRNNCGVHPQIIQKMSTRMPSLEIRMKALKDIASEN 180

Query: 181 GITLQFDEQGELSSSIQNRKRSRQQN 207
           GI LQ +   E S S++      +QN
Sbjct: 181 GIVLQLE---ETSVSVEEHFNLEKQN 203

[Close]
BLAST of ClCG08G005170.1 vs. TAIR10
Match: AT1G13340.1 (AT1G13340.1 Regulator of Vps4 activity in the MVB pathway protein)

HSP 1 Score: 170.2 bits (430), Expect = 1.4e-42
Identity = 90/207 (43.48%), Postives = 131/207 (63.29%), Query Frame = 1 

Query: 1   MRRILNPLVGRSFKSSGFRRLVQSAFTRLQSLKNYRHGRYSEDRNDVVRLLQDGLPKLAL 60
           M + L+ L+GRSFK++ F+ L+  A TRL  LKN R  R S+  +DV  LL+ G  + A 
Sbjct: 1   MGKKLDALLGRSFKTNKFKSLITLALTRLSILKNQRQARLSQAISDVTELLKLGQHEHAY 60

Query: 61  SRCEQMIKHQNLLDAYGMIEGYLNLLVERINLLGRGRECPDELKEAVSSVVFAASRWKDF 120
            R +Q++K QN LD    I GY  L ++RI+L    R+CP+EL EAVS ++FAASR  +F
Sbjct: 61  HRVDQVVKDQNTLDVLFFIHGYFTLCLDRIHLFEHNRDCPEELLEAVSGLLFAASRIGEF 120

Query: 121 PELEDIKSILTSQFGKEFTGRAVELRNNNSVNDSIMQKLSTRKPNMESKMNLLRVIASEN 180
           PEL++I+++L S+FGK+   R++ELR+N  V+  I+QKLSTR P  E +M  L+ IA+EN
Sbjct: 121 PELQEIRNVLISRFGKDLAARSIELRSNCGVDPKIIQKLSTRPPPKEVRMKALKEIAAEN 180

Query: 181 GITLQFDEQGELSSSIQNRKRSRQQNK 208
            I L+ D+    +    N + +   +K
Sbjct: 181 NIVLKLDQASTSTEGTTNMQGTSDVSK 207

[Close]
BLAST of ClCG08G005170.1 vs. TAIR10
Match: AT2G19710.1 (AT2G19710.1 Regulator of Vps4 activity in the MVB pathway protein)

HSP 1 Score: 118.6 bits (296), Expect = 4.9e-27
Identity = 68/213 (31.92%), Postives = 119/213 (55.87%), Query Frame = 1 

Query: 5   LNPLVGRSFKSSGFRRLVQSAFTRLQSLKNYRHGRYSEDRNDVVRLLQDGLPKLALSRCE 64
           +  ++ R FK +  +  +Q A +RL+ LKN +  +  + R ++ +LL+ G    A  R E
Sbjct: 1   MKKVLQRGFKPAKCKTALQMANSRLKILKNKKEIQIKQLRRELAQLLESGQTPTARIRVE 60

Query: 65  QMIKHQNLLDAYGMIEGYLNLLVERINLLGRGRECPDELKEAVSSVVFAASRWKDFPELE 124
            +++ +  + AY +I  Y  LLV R+ ++   + CP +LKEAV+SV+FA+ R  D PEL 
Sbjct: 61  HVVREEKTVAAYELIGIYCELLVVRLGVIESQKNCPIDLKEAVTSVLFASQRLSDVPELS 120

Query: 125 DIKSILTSQFGKEFTGRAVELRNNNSVNDSIMQKLSTRKPNMESKMNLLRVIASENGITL 184
           +I    T+++GK+F+  AVELR ++ V+  +++KLS + P+  +K+ +L  IA E+ +  
Sbjct: 121 EIFKQFTTKYGKDFSTSAVELRPDSGVSRLLVEKLSAKAPDGPTKVKILMAIAEEHNVVW 180

Query: 185 Q---FDEQGELSSSIQNRKRSRQQNKGMGLTTS 215
           +   F E     + + N   S Q    M + +S
Sbjct: 181 EAQSFVESDPKDTELLNGANSFQPASSMNMDSS 213

[Close]
BLAST of ClCG08G005170.1 vs. TAIR10
Match: AT4G35730.1 (AT4G35730.1 Regulator of Vps4 activity in the MVB pathway protein)

HSP 1 Score: 115.2 bits (287), Expect = 5.4e-26
Identity = 60/172 (34.88%), Postives = 98/172 (56.98%), Query Frame = 1 

Query: 8   LVGRSFKSSGFRRLVQSAFTRLQSLKNYRHGRYSEDRNDVVRLLQDGLPKLALSRCEQMI 67
           L  R F SS  +   + A  R++ ++N R     + R D+  LLQ G    A  R E +I
Sbjct: 21  LFRRGFNSSKCKTAAKMAVARIKLIRNKRLVVVKQMRRDIAVLLQSGQDATARIRVEHVI 80

Query: 68  KHQNLLDAYGMIEGYLNLLVERINLLGRGRECPDELKEAVSSVVFAASRWKDFPELEDIK 127
           + QN+  A  +IE +  L+V R+ ++ + ++CP +LKE ++S++FAA R  + PEL D++
Sbjct: 81  REQNIQAANEIIELFCELIVSRLTIITKQKQCPVDLKEGIASLIFAAPRCSEIPELGDLR 140

Query: 128 SILTSQFGKEFTGRAVELRNNNSVNDSIMQKLSTRKPNMESKMNLLRVIASE 180
            I   ++GK+F   A +LR +  VN  ++ KLS R P  E K+ +++ IA E
Sbjct: 141 DIFAKKYGKDFVSAATDLRPSCGVNRMLIDKLSVRNPGGEYKLKIMKEIAKE 192

[Close]
BLAST of ClCG08G005170.1 vs. TAIR10
Match: AT4G29440.1 (AT4G29440.1 Regulator of Vps4 activity in the MVB pathway protein)

HSP 1 Score: 111.7 bits (278), Expect = 6.0e-25
Identity = 65/226 (28.76%), Postives = 123/226 (54.42%), Query Frame = 1 

Query: 1   MRRILNPLVGRSFKSSGFRRLVQSAFTRLQSLKNYRHGRYSEDRNDVVRLLQDGLPKLAL 60
           M+++L+    RSFK +  +  +Q A +RL+ LKN +  +  + R ++  LL+ G  + A 
Sbjct: 1   MKKVLH----RSFKPAKCKIALQMAASRLKILKNKKDTQIKQLRRELAHLLESGQTQTAK 60

Query: 61  SRCEQMIKHQNLLDAYGMIEGYLNLLVERINLLGRGRECPDELKEAVSSVVFAASRWKDF 120
            R E +++ +  + AY ++  Y  LLV R+ ++   + CP++LKEAV+SV++A+ R  D 
Sbjct: 61  IRVEHVVREEKTVAAYELVGIYCELLVARLGVIDSQKTCPNDLKEAVASVLYASQRLTDV 120

Query: 121 PELEDIKSILTSQFGKEFTGRAVELRNNNSVNDSIMQKLSTRKPNMESKMNLLRVIASEN 180
            EL DI    ++++GK+F   A+ L+ ++ V+  +++KLS + P+  +K+ +L  IA+++
Sbjct: 121 GELSDIVKHFSAKYGKDFVSAAIGLQPDSGVSRLLVEKLSVKAPDGPTKIKILTEIATQH 180

Query: 181 GITLQFDEQGELSSSIQNRKRSRQQNKGMGLTTSSYQTRSSSRKHR 227
            +T       E  S +++  +      G   + S   T   S   R
Sbjct: 181 NVT------WEAESLVESDPKETMSASGASSSVSQPATGIKSESSR 216

[Close]
BLAST of ClCG08G005170.1 vs. TAIR10
Match: AT1G25420.1 (AT1G25420.1 Regulator of Vps4 activity in the MVB pathway protein)

HSP 1 Score: 110.5 bits (275), Expect = 1.3e-24
Identity = 58/176 (32.95%), Postives = 101/176 (57.39%), Query Frame = 1 

Query: 4   ILNPLVGRSFKSSGFRRLVQSAFTRLQSLKNYRHGRYSEDRNDVVRLLQDGLPKLALSRC 63
           +LN L  R    +  +  +  A  R++ L+N R  +    + ++   LQ G   +A  R 
Sbjct: 3   LLNQLFNRGIFGAKCKTSLNLAIARMKLLQNKRDMQLKHMKKEIAHFLQAGQEPIARIRV 62

Query: 64  EQMIKHQNLLDAYGMIEGYLNLLVERINLLGRGRECPDELKEAVSSVVFAASRWKDFPEL 123
           E +I+  NL  AY ++E +   ++ R+ +L   +ECP EL+EA++S++FAA R  + P+L
Sbjct: 63  EHVIREMNLWAAYEILELFCEFILARVPILESEKECPRELREAIASIIFAAPRCSEVPDL 122

Query: 124 EDIKSILTSQFGKEFTGRAVELRNNNSVNDSIMQKLSTRKPNMESKMNLLRVIASE 180
             IK++  +++GKEF   A ELR ++ VN +I++KLS   P+  +++ +L+ IA E
Sbjct: 123 LQIKNLFGTKYGKEFIMVASELRPDSGVNRTIIEKLSPTSPSGAARLKMLKEIAQE 178

[Close]
BLAST of ClCG08G005170.1 vs. NCBI nr
Match: gi|659089696|ref|XP_008445649.1| (PREDICTED: uncharacterized protein LOC103488605 [Cucumis melo])

HSP 1 Score: 341.3 bits (874), Expect = 1.3e-90
Identity = 176/227 (77.53%), Postives = 199/227 (87.67%), Query Frame = 1 

Query: 1   MRRILNPLVGRSFKSSGFRRLVQSAFTRLQSLKNYRHGRYSEDRNDVVRLLQDGLPKLAL 60
           MRRILN +VGRSF+SSGF+RLVQS+FTRLQSL ++R  RYSED NDV+ LLQDGL KLAL
Sbjct: 1   MRRILNRVVGRSFRSSGFKRLVQSSFTRLQSLTDHRRRRYSEDLNDVLSLLQDGLHKLAL 60

Query: 61  SRCEQMIKHQNLLDAYGMIEGYLNLLVERINLLGRGRECPDELKEAVSSVVFAASRWKDF 120
           SRCEQMIKHQNLLDAYG+IEGYLNLL+ERI LLGR RECPDELKEA SSVVFAASRWKDF
Sbjct: 61  SRCEQMIKHQNLLDAYGLIEGYLNLLMERIQLLGRARECPDELKEAASSVVFAASRWKDF 120

Query: 121 PELEDIKSILTSQFGKEFTGRAVELRNNNSVNDSIMQKLSTRKPNMESKMNLLRVIASEN 180
            EL DIKSI TSQFGKEFT  AVELRNNN VN SI+QKLST+KP+M+SKMNLL++IAS+ 
Sbjct: 121 TELGDIKSIFTSQFGKEFTAPAVELRNNNRVNQSIIQKLSTKKPDMKSKMNLLKLIASDK 180

Query: 181 GITLQFDEQGELSSSIQNRKRSRQQNKGMGLTTSSYQTRSSSRKHRR 228
           GI +Q ++QGE   SIQ RKRSR+QN+ +  TTSSYQTR+SSRK RR
Sbjct: 181 GIVVQLNDQGEPFGSIQTRKRSREQNEVVIATTSSYQTRNSSRKLRR 227

[Close]
BLAST of ClCG08G005170.1 vs. NCBI nr
Match: gi|778710094|ref|XP_011656518.1| (PREDICTED: uncharacterized protein LOC101210797 [Cucumis sativus])

HSP 1 Score: 317.0 bits (811), Expect = 2.7e-83
Identity = 159/227 (70.04%), Postives = 196/227 (86.34%), Query Frame = 1 

Query: 1   MRRILNPLVGRSFKSSGFRRLVQSAFTRLQSLKNYRHGRYSEDRNDVVRLLQDGLPKLAL 60
           MR+I+  ++GRSF SS F+R VQS+FTRL+SL ++R  R+SED N+VV LLQ+ L +LAL
Sbjct: 1   MRKIMKRVLGRSFSSSCFKRSVQSSFTRLKSLTDHRRRRFSEDLNEVVSLLQEDLQELAL 60

Query: 61  SRCEQMIKHQNLLDAYGMIEGYLNLLVERINLLGRGRECPDELKEAVSSVVFAASRWKDF 120
           SRCEQMIKHQNL+DAYG+IEGYLNLL+ERI+LLGR RECPDELKEAVSSV+FAASRWKDF
Sbjct: 61  SRCEQMIKHQNLVDAYGLIEGYLNLLIERIHLLGRERECPDELKEAVSSVIFAASRWKDF 120

Query: 121 PELEDIKSILTSQFGKEFTGRAVELRNNNSVNDSIMQKLSTRKPNMESKMNLLRVIASEN 180
            EL D+KSI TSQFGKEFT RAVELRNNN VN SI+QKLS +KP+ +SKMNLL++IAS+ 
Sbjct: 121 TELGDVKSIFTSQFGKEFTARAVELRNNNRVNQSIIQKLSAKKPDTKSKMNLLKLIASDK 180

Query: 181 GITLQFDEQGELSSSIQNRKRSRQQNKGMGLTTSSYQTRSSSRKHRR 228
           GI ++ +E+G+LS SIQ RKR R++NK +  TTSSYQTR+SSR+ +R
Sbjct: 181 GIVVKLNEEGKLSKSIQIRKRGREKNKVVTATTSSYQTRNSSRRPKR 227

[Close]
BLAST of ClCG08G005170.1 vs. NCBI nr
Match: gi|659089698|ref|XP_008445650.1| (PREDICTED: uncharacterized protein LOC103488606 [Cucumis melo])

HSP 1 Score: 206.8 bits (525), Expect = 3.9e-50
Identity = 118/225 (52.44%), Postives = 160/225 (71.11%), Query Frame = 1 

Query: 1   MRRILNPLVGRSFKSSGFRRLVQSAFTRLQSLKNYRHGRYSEDRNDVVRLLQDGLPKLAL 60
           M R L+ L+GR+F++S FR L+  + +RL  L + R  R S+  +DV++LLQ      AL
Sbjct: 1   MGRKLDALLGRNFRASKFRPLLNLSLSRLSILTSQRRLRCSQANSDVLQLLQLSHHHRAL 60

Query: 61  SRCEQMIKHQNLLDAYGMIEGYLNLLVERINLLGRGRECPDELKEAVSSVVFAASRWKDF 120
            R E++IK QN LDAY +IEGYLNLL+ER  LL +  ECP+ELKEAV+ ++FAASR  DF
Sbjct: 61  LRVEKVIKDQNALDAYVLIEGYLNLLLERTTLLEQQSECPEELKEAVAGLLFAASRCGDF 120

Query: 121 PELEDIKSILTSQFGKEFTGRAVELRNNNSVNDSIMQKLSTRKPNMESKMNLLRVIASEN 180
           PEL +IKS+LT++FGKEFT RAVELRNN  VN S+MQKLSTR+P +E++M +L+ IASEN
Sbjct: 121 PELHEIKSVLTTRFGKEFTARAVELRNNCGVNLSLMQKLSTRQPTLETRMEVLKSIASEN 180

Query: 181 GITLQFDEQGELSSSIQNRKRSRQQNKGMGLTTS-SYQTRSSSRK 225
           GI LQFD+     S+ +   RS +Q++  G +   S +  S S+K
Sbjct: 181 GIVLQFDQLPH--SNEEKVARSGRQSEAEGRSEKFSNEVASDSKK 223

[Close]
BLAST of ClCG08G005170.1 vs. NCBI nr
Match: gi|719967967|ref|XP_010263421.1| (PREDICTED: uncharacterized protein LOC104601677 isoform X1 [Nelumbo nucifera])

HSP 1 Score: 206.8 bits (525), Expect = 3.9e-50
Identity = 109/207 (52.66%), Postives = 152/207 (73.43%), Query Frame = 1 

Query: 1   MRRILNPLVGRSFKSSGFRRLVQSAFTRLQSLKNYRHGRYSEDRNDVVRLLQDGLPKLAL 60
           M + L+ L+GR+FK+S F+ LV  A +RL  LKN R  R S+ R+DVV LL  G  + AL
Sbjct: 1   MGKKLDALLGRTFKASKFKALVNLAISRLAVLKNQREVRGSQARSDVVHLLNLGHHERAL 60

Query: 61  SRCEQMIKHQNLLDAYGMIEGYLNLLVERINLLGRGRECPDELKEAVSSVVFAASRWKDF 120
            R EQ+IK QN+L+ + MIEGY +LL+ER+ L+   ++CPDELKEA+SS++FAASR  +F
Sbjct: 61  LRVEQVIKEQNMLNVFVMIEGYCHLLMERVVLIENNKQCPDELKEAISSLIFAASRCGEF 120

Query: 121 PELEDIKSILTSQFGKEFTGRAVELRNNNSVNDSIMQKLSTRKPNMESKMNLLRVIASEN 180
           PEL+++++I TS+FGKEF  RAVELRNN  VN  I+QK+STR+PN+ES+  +L+ IASEN
Sbjct: 121 PELQELRAIFTSRFGKEFAARAVELRNNCQVNPKIIQKMSTRQPNLESRSKVLKEIASEN 180

Query: 181 GITLQFDEQGELSSSIQNRKRSRQQNK 208
           GI+L  +   E+SS    ++R  Q+ K
Sbjct: 181 GISLHLE---EVSSDTNKQERMDQEQK 204

[Close]
BLAST of ClCG08G005170.1 vs. NCBI nr
Match: gi|719967970|ref|XP_010263425.1| (PREDICTED: uncharacterized protein LOC104601677 isoform X2 [Nelumbo nucifera])

HSP 1 Score: 203.0 bits (515), Expect = 5.6e-49
Identity = 105/201 (52.24%), Postives = 147/201 (73.13%), Query Frame = 1 

Query: 1   MRRILNPLVGRSFKSSGFRRLVQSAFTRLQSLKNYRHGRYSEDRNDVVRLLQDGLPKLAL 60
           M + L+ L+GR+FK+S F+ LV  A +RL  LKN R  R S+ R+DVV LL  G  + AL
Sbjct: 1   MGKKLDALLGRTFKASKFKALVNLAISRLAVLKNQREVRGSQARSDVVHLLNLGHHERAL 60

Query: 61  SRCEQMIKHQNLLDAYGMIEGYLNLLVERINLLGRGRECPDELKEAVSSVVFAASRWKDF 120
            R EQ+IK QN+L+ + MIEGY +LL+ER+ L+   ++CPDELKEA+SS++FAASR  +F
Sbjct: 61  LRVEQVIKEQNMLNVFVMIEGYCHLLMERVVLIENNKQCPDELKEAISSLIFAASRCGEF 120

Query: 121 PELEDIKSILTSQFGKEFTGRAVELRNNNSVNDSIMQKLSTRKPNMESKMNLLRVIASEN 180
           PEL+++++I TS+FGKEF  RAVELRNN  VN  I+QK+STR+PN+ES+  +L+ IASEN
Sbjct: 121 PELQELRAIFTSRFGKEFAARAVELRNNCQVNPKIIQKMSTRQPNLESRSKVLKEIASEN 180

Query: 181 GITLQFDEQGELSSSIQNRKR 202
           GI+L  +++       QN  +
Sbjct: 181 GISLHLEQERMDQEQKQNHHK 201

The following BLAST results are available for this feature:
BLAST of ClCG08G005170.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
IST1L_DICDI1.1e-1230.59IST1-like protein OS=Dictyostelium discoideum GN=DDB_G0289029 PE=3 SV=1[more]
BLAST of ClCG08G005170.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K949_CUCSA1.9e-8370.04Uncharacterized protein OS=Cucumis sativus GN=Csa_6G031970 PE=4 SV=1[more]
A0A0B2SE71_GLYSO1.1e-4850.72IST1-like protein OS=Glycine soja GN=glysoja_044795 PE=4 SV=1[more]
C6TEJ2_SOYBN1.1e-4850.72Uncharacterized protein OS=Glycine max GN=GLYMA_01G083000 PE=2 SV=1[more]
C6TIN4_SOYBN1.1e-4849.05Putative uncharacterized protein OS=Glycine max PE=2 SV=1[more]
A0A151QR33_CAJCA1.9e-4850.49IST1-like protein OS=Cajanus cajan GN=KK1_046528 PE=4 SV=1[more]
BLAST of ClCG08G005170.1 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G13340.11.4e-4243.48 Regulator of Vps4 activity in the MVB pathway protein[more]
AT2G19710.14.9e-2731.92 Regulator of Vps4 activity in the MVB pathway protein[more]
AT4G35730.15.4e-2634.88 Regulator of Vps4 activity in the MVB pathway protein[more]
AT4G29440.16.0e-2528.76 Regulator of Vps4 activity in the MVB pathway protein[more]
AT1G25420.11.3e-2432.95 Regulator of Vps4 activity in the MVB pathway protein[more]
BLAST of ClCG08G005170.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659089696|ref|XP_008445649.1|1.3e-9077.53PREDICTED: uncharacterized protein LOC103488605 [Cucumis melo][more]
gi|778710094|ref|XP_011656518.1|2.7e-8370.04PREDICTED: uncharacterized protein LOC101210797 [Cucumis sativus][more]
gi|659089698|ref|XP_008445650.1|3.9e-5052.44PREDICTED: uncharacterized protein LOC103488606 [Cucumis melo][more]
gi|719967967|ref|XP_010263421.1|3.9e-5052.66PREDICTED: uncharacterized protein LOC104601677 isoform X1 [Nelumbo nucifera][more]
gi|719967970|ref|XP_010263425.1|5.6e-4952.24PREDICTED: uncharacterized protein LOC104601677 isoform X2 [Nelumbo nucifera][more]
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR005061Ist1
Vocabulary: Biological Process
TermDefinition
GO:0015031protein transport
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015031 protein transport
biological_process GO:0006952 defense response
biological_process GO:0050789 regulation of biological process
biological_process GO:0044763 single-organism cellular process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
ClCG08G005170ClCG08G005170gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
ClCG08G005170.1ClCG08G005170.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
ClCG08G005170.1.cds5ClCG08G005170.1.cds5CDS
ClCG08G005170.1.cds4ClCG08G005170.1.cds4CDS
ClCG08G005170.1.cds3ClCG08G005170.1.cds3CDS
ClCG08G005170.1.cds2ClCG08G005170.1.cds2CDS
ClCG08G005170.1.cds1ClCG08G005170.1.cds1CDS


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
ClCG08G005170.1.five_prime_UTR1ClCG08G005170.1.five_prime_UTR1five_prime_UTR


InterPro
Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005061Vacuolar protein sorting-associated protein Ist1PANTHERPTHR12161UNCHARACTERIZED DUF292coord: 3..207
score: 3.0
IPR005061Vacuolar protein sorting-associated protein Ist1PFAMPF03398Ist1coord: 21..182
score: 2.8
NoneNo IPR availablePANTHERPTHR12161:SF16SUBFAMILY NOT NAMEDcoord: 3..207
score: 3.0