ClCG08G002740.1 (mRNA) Watermelon (Charleston Gray)
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GTAAAACCCGTTAGGCTTTATATAAATAAACAAAGTGGAGAGACAAAACTTCTTCGTCTAAAATCAGTATTCTTTTTAAATCCAATCGCCAAATTTAACGATGTCCCGATCGCTGGTGCAGCCGATCGGGCAGAAGAGGCTGACCAACGTTGCGGTGGTTCGTTTGAAGAAACACGGTCTTCGTTTCGAGATTGCCTGTTACAAGAACAAGGTCCTTTCTTGGCGCTCTGGCGTGTAAGCTCCCTTAAACCCTATCGTTTCTCTCTTCAATTCTCGGATTTTCTCTTGTTGTTTGATGGGTTCTATGCTTTCAAGACGGTATAGCTTTGATGTTAGGACGGAAATTACATCCAATTTAAGATTCATTAGTTGAATGGAGGATCCTCTTGGCCAACGGATTAGGAAAAGCCTCTTCTAATTGCTAGTGACTACTTTAGTTGGAGTGGTAAGTTATTAAAGTATATAGAGATTTTTATACAGATGACCTATTCTCAGCTCTAAATGATTGATGATCCATCCCAGAAATAAATGAAATATAATCTTTTGCTTAATTTGCGATTGGGATAGTCATGTCTATAATAGCCTCAACTCAATGACCATGTCTATTGCGATCTTCATTTTTTCCCATTTTGTCGTACTTTGTCATGAATATTGTAGTAGAGTGGAGAAAAATGAAGATTGCGACAGACATAGTCGTCGTGTGATCCCTAACGCGATACGGTAGTGTACTTTGACGTAAGCAGAAGATTAGATTTCATTTATATTTGGAGATGGGTCATTAATCATTTAGAGGCTGAGAATGGGGACTATCTGCACGAAAATCTCTAGATATGCATATAAAAAATCAGATGAACTTTGAACTTCAGGGCTCGAGTTGCAATTGCATCAAAGTACGAAGTTGTATTTTGCAGTTTTCCTTTCGTTATTCATTTTCCATCCCGATGCATACTATTTGACCTACTTTGGTACTGATTTATATTTTATTATTTGTCTTGTATGCTGTGTTGACTATGAACTTGATAATGTATGTTGTGACAGGGAAAAGGATTTGGATGAGGTCTTGCAATCACAAATTGTTTATTCGAATGTTTCGAAAGGAGTTCTTGCAAAAACAAAAGATTTAAAAGTAGCTTTTGGTACAGATGATCAGATGGAAATTTGTTTGAAGGTTTGTGGAATTCCTGAATAAATGTTTTTTGTATTGTTTTTATATTGCATCTAGTACTTTATGGATAATTCTTTTTATCAGTGTATGCTTTTGTTGTCATTTCTTATGAACTGATGAGATTATCAACTTGCTGGTACTAGATTCTTAAAGAAGGGGAACTTCAAATTGCAGGGAAGGAGAGGGAGGCTCAATTATCTAATCAGTTTCGTGATATCGCAACCATTGTTATGCAGAAGACCTTCAATCCTGAAACTAAACGCCCTTACACCATTAGCATGATTGAGCGACTCCTGCGTGAAATTCATTTTGCTGTTGATCCAAACCACAGCTCAAAGAAACAGGTAGGTTGATACTTTTTGCTGAATGTGAGATTAACATTCTTCTGCTTTCAATTTGTATAACTCTAAATTCAAGGCCGCAATTTTCAGCTGATATTTTTTATGATATGTAGGCACTAGAGGTCATTCATGAGCTCCAGAAACAGTTCCCAATTAAACGTTCGCCTATGAGAATACGATATGTTGTACCTGAACAGAACTCCCCATCTCTCCTTGATAAGTTAAATGCTTGGAGTGCTAGTATCATTTCCAATGATCAGTCTGGAAATCAGCAACGAAGCATTGTGAGTCTGAGTTTTTTCATTGCAATTTTTGTTTTGCATATCTTCTCCAATTTGCTAATGATATCATCGTTTCACTCCTCCTAGAACAAGTTGAATTCTTGCTTTGATTGTTGGTTCCTGCATGGGTGTCAATGTGCCATTAGTTGCCCATTTTGGACTATGCCATGTTTGTCTGTACTATATTGCATGATAAATCCTAGGAACGAAGATTTCAGGAAGCAAACCATTTCTACCTAGCCACGAACATAGACAATTCACTTTTGTTTTTGATGTGATAAGAATTTCAAGCAAGGTCTAGGAATTTAGTTGTGCTTAAAACCAGCTAGTGTTAAGAGACATTGAAATGTGAATGTTATTTACTTATATTATTGTGTCATCGTTTCATTTTGCTGGAGTGGGGTTGAGAGAAGGAAATTATTTGAAACACTATAGTTAGGACACTAAGGTATATATATATACACATATATACATATATATGTGTATATATATAATTGCCATCATCACGGTAATCAAAGAGGTGTATGAGTACAGAGCTAGGTAATGGTAAAAGCCCTTCTATATTATACTTATCATCTGTTTGTTATGGTAAACATCTTTCTATTCATCATATTGAATGCTGTAGTTTTAAGCAGTAATCTTGGTAATGATGAATTACTTGAAGTACGCACGAGCCGTTCAGAACTATTGGTGTTCATTTATTATTAGCTAATGCTTGTTTTGCTGCCTTAGTAGTTGTTTTTATGTAGCCAAGTTTCATGATCTCTCCGGAGTAATTTCCTGTTTTTCTACATCTCTTTGTTGGGTCAAATGCGCAGTGATCAAGTTTAGACTATTAAATTGGTTATTGATTAGTAACTTCATATGTGCCCTTCTCATTAAGTACTGACAATGCTTTGCAGTAGGCTGCCTTCCATAATACAGGCACTGGGAACTGAGTTTTTGTGTTTGGTTGTTGCAACAGATTTGTGAATTGGATCCTAGCTTTTATCGAGACTGTAATCCATTAATGAGTGAACTACAAGGCAGATTTGAAGTTCTCTCTTTTTGTTTGCACGAGGAAGGGGACACCAATGTGGATCAATACGACGATGATTATGAGAATATGGAACTGCCACCAAGGCAAGTAAAGGAACCGGAATCGGCTATTCCCCAGCTAAGTGAAGCTTTACAAAAGCAGACAATCTCTGTCAATGGCGAGAATGCCCCGAAGGAAGGAAAACGCTGCAGCACATGCAACATAGTTGTGGGGGATGCTACTCAGTTTAGAGAGCATCACAAGAGTGAATGGCATAAGCATAATGTCAAGCGCAAAACCAAGAATCTTCCACCTTTGACTGAAGAAGAGTGCACGGTAGAATTGGCAATGGGCGAGTCGGAGTCCGACCTGAAGGAGTATTCATTTTGAACTACTGGTGTGTTATGCTTTGTTGAATTGGTATGAGCTTTTTGTACTTCAGTTTTGGTGCTAAATAGTAAGAAACAATACTGCAATTGGCTAGTTATAGCTTACACATATTGGACGGTCTCATGGCATGTCACATGCTGCCACAATCGCTAAGTTTTCATAGTTTTCTTCGTTTTAATGTTGAAGTGATGTTTAATATTGAATCAAGATCATGTGTATACATTTTGCCTTTAAGATATATATACAGGAAGTAACCTTTTTGACTTTGTACTCGAATAACCTGTAATGCAACTATGCACGGAATGCAAATCAG GTAAAACCCGTTAGGCTTTATATAAATAAACAAAGTGGAGAGACAAAACTTCTTCGTCTAAAATCAGTATTCTTTTTAAATCCAATCGCCAAATTTAACGATGTCCCGATCGCTGGTGCAGCCGATCGGGCAGAAGAGGCTGACCAACGTTGCGGTGGTTCGTTTGAAGAAACACGGTCTTCGTTTCGAGATTGCCTGTTACAAGAACAAGGTCCTTTCTTGGCGCTCTGGCGTGGAAAAGGATTTGGATGAGGTCTTGCAATCACAAATTGTTTATTCGAATGTTTCGAAAGGAGTTCTTGCAAAAACAAAAGATTTAAAAGTAGCTTTTGGTACAGATGATCAGATGGAAATTTGTTTGAAGATTCTTAAAGAAGGGGAACTTCAAATTGCAGGGAAGGAGAGGGAGGCTCAATTATCTAATCAGTTTCGTGATATCGCAACCATTGTTATGCAGAAGACCTTCAATCCTGAAACTAAACGCCCTTACACCATTAGCATGATTGAGCGACTCCTGCGTGAAATTCATTTTGCTGTTGATCCAAACCACAGCTCAAAGAAACAGGCACTAGAGGTCATTCATGAGCTCCAGAAACAGTTCCCAATTAAACGTTCGCCTATGAGAATACGATATGTTGTACCTGAACAGAACTCCCCATCTCTCCTTGATAAGTTAAATGCTTGGAGTGCTAGTATCATTTCCAATGATCAGTCTGGAAATCAGCAACGAAGCATTATTTGTGAATTGGATCCTAGCTTTTATCGAGACTGTAATCCATTAATGAGTGAACTACAAGGCAGATTTGAAGTTCTCTCTTTTTGTTTGCACGAGGAAGGGGACACCAATGTGGATCAATACGACGATGATTATGAGAATATGGAACTGCCACCAAGGCAAGTAAAGGAACCGGAATCGGCTATTCCCCAGCTAAGTGAAGCTTTACAAAAGCAGACAATCTCTGTCAATGGCGAGAATGCCCCGAAGGAAGGAAAACGCTGCAGCACATGCAACATAGTTGTGGGGGATGCTACTCAGTTTAGAGAGCATCACAAGAGTGAATGGCATAAGCATAATGTCAAGCGCAAAACCAAGAATCTTCCACCTTTGACTGAAGAAGAGTGCACGGTAGAATTGGCAATGGGCGAGTCGGAGTCCGACCTGAAGGAGTATTCATTTTGAACTACTGGTGTGTTATGCTTTGTTGAATTGGTATGAGCTTTTTGTACTTCAGTTTTGGTGCTAAATAGTAAGAAACAATACTGCAATTGGCTAGTTATAGCTTACACATATTGGACGGTCTCATGGCATGTCACATGCTGCCACAATCGCTAAGTTTTCATAGTTTTCTTCGTTTTAATGTTGAAGTGATGTTTAATATTGAATCAAGATCATGTGTATACATTTTGCCTTTAAGATATATATACAGGAAGTAACCTTTTTGACTTTGTACTCGAATAACCTGTAATGCAACTATGCACGGAATGCAAATCAG ATGTCCCGATCGCTGGTGCAGCCGATCGGGCAGAAGAGGCTGACCAACGTTGCGGTGGTTCGTTTGAAGAAACACGGTCTTCGTTTCGAGATTGCCTGTTACAAGAACAAGGTCCTTTCTTGGCGCTCTGGCGTGGAAAAGGATTTGGATGAGGTCTTGCAATCACAAATTGTTTATTCGAATGTTTCGAAAGGAGTTCTTGCAAAAACAAAAGATTTAAAAGTAGCTTTTGGTACAGATGATCAGATGGAAATTTGTTTGAAGATTCTTAAAGAAGGGGAACTTCAAATTGCAGGGAAGGAGAGGGAGGCTCAATTATCTAATCAGTTTCGTGATATCGCAACCATTGTTATGCAGAAGACCTTCAATCCTGAAACTAAACGCCCTTACACCATTAGCATGATTGAGCGACTCCTGCGTGAAATTCATTTTGCTGTTGATCCAAACCACAGCTCAAAGAAACAGGCACTAGAGGTCATTCATGAGCTCCAGAAACAGTTCCCAATTAAACGTTCGCCTATGAGAATACGATATGTTGTACCTGAACAGAACTCCCCATCTCTCCTTGATAAGTTAAATGCTTGGAGTGCTAGTATCATTTCCAATGATCAGTCTGGAAATCAGCAACGAAGCATTATTTGTGAATTGGATCCTAGCTTTTATCGAGACTGTAATCCATTAATGAGTGAACTACAAGGCAGATTTGAAGTTCTCTCTTTTTGTTTGCACGAGGAAGGGGACACCAATGTGGATCAATACGACGATGATTATGAGAATATGGAACTGCCACCAAGGCAAGTAAAGGAACCGGAATCGGCTATTCCCCAGCTAAGTGAAGCTTTACAAAAGCAGACAATCTCTGTCAATGGCGAGAATGCCCCGAAGGAAGGAAAACGCTGCAGCACATGCAACATAGTTGTGGGGGATGCTACTCAGTTTAGAGAGCATCACAAGAGTGAATGGCATAAGCATAATGTCAAGCGCAAAACCAAGAATCTTCCACCTTTGACTGAAGAAGAGTGCACGGTAGAATTGGCAATGGGCGAGTCGGAGTCCGACCTGAAGGAGTATTCATTTTGA MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKVAFGTDDQMEICLKILKEGELQIAGKEREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLLREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYVVPEQNSPSLLDKLNAWSASIISNDQSGNQQRSIICELDPSFYRDCNPLMSELQGRFEVLSFCLHEEGDTNVDQYDDDYENMELPPRQVKEPESAIPQLSEALQKQTISVNGENAPKEGKRCSTCNIVVGDATQFREHHKSEWHKHNVKRKTKNLPPLTEEECTVELAMGESESDLKEYSF
BLAST of ClCG08G002740.1 vs. Swiss-Prot
Match: SBDS_MOUSE (Ribosome maturation protein SBDS OS=Mus musculus GN=Sbds PE=1 SV=4) HSP 1 Score: 253.8 bits (647), Expect = 2.7e-66 Identity = 135/247 (54.66%), Postives = 174/247 (70.45%), Query Frame = 1
BLAST of ClCG08G002740.1 vs. Swiss-Prot
Match: SBDS_RAT (Ribosome maturation protein SBDS OS=Rattus norvegicus GN=Sbds PE=2 SV=1) HSP 1 Score: 252.7 bits (644), Expect = 6.1e-66 Identity = 133/247 (53.85%), Postives = 174/247 (70.45%), Query Frame = 1
BLAST of ClCG08G002740.1 vs. Swiss-Prot
Match: SBDS_BOVIN (Ribosome maturation protein SBDS OS=Bos taurus GN=SBDS PE=2 SV=1) HSP 1 Score: 251.9 bits (642), Expect = 1.0e-65 Identity = 133/247 (53.85%), Postives = 173/247 (70.04%), Query Frame = 1
BLAST of ClCG08G002740.1 vs. Swiss-Prot
Match: SBDS_HUMAN (Ribosome maturation protein SBDS OS=Homo sapiens GN=SBDS PE=1 SV=4) HSP 1 Score: 247.7 bits (631), Expect = 2.0e-64 Identity = 131/247 (53.04%), Postives = 172/247 (69.64%), Query Frame = 1
BLAST of ClCG08G002740.1 vs. Swiss-Prot
Match: SBDS_PONAB (Ribosome maturation protein SBDS OS=Pongo abelii GN=SBDS PE=2 SV=1) HSP 1 Score: 247.7 bits (631), Expect = 2.0e-64 Identity = 131/247 (53.04%), Postives = 172/247 (69.64%), Query Frame = 1
BLAST of ClCG08G002740.1 vs. TrEMBL
Match: A0A0A0KIY6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G397690 PE=4 SV=1) HSP 1 Score: 679.9 bits (1753), Expect = 1.7e-192 Identity = 330/359 (91.92%), Postives = 349/359 (97.21%), Query Frame = 1
BLAST of ClCG08G002740.1 vs. TrEMBL
Match: W9RW90_9ROSA (Ribosome maturation protein SBDS OS=Morus notabilis GN=L484_005390 PE=4 SV=1) HSP 1 Score: 506.1 bits (1302), Expect = 3.4e-140 Identity = 259/362 (71.55%), Postives = 300/362 (82.87%), Query Frame = 1
BLAST of ClCG08G002740.1 vs. TrEMBL
Match: A0A0D2RB94_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G083500 PE=4 SV=1) HSP 1 Score: 494.6 bits (1272), Expect = 1.0e-136 Identity = 247/369 (66.94%), Postives = 294/369 (79.67%), Query Frame = 1
BLAST of ClCG08G002740.1 vs. TrEMBL
Match: V4V6B7_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10001639mg PE=4 SV=1) HSP 1 Score: 491.9 bits (1265), Expect = 6.7e-136 Identity = 246/363 (67.77%), Postives = 294/363 (80.99%), Query Frame = 1
BLAST of ClCG08G002740.1 vs. TrEMBL
Match: A0A061FPW2_THECC (Sequence-specific DNA binding transcription factors OS=Theobroma cacao GN=TCM_035364 PE=4 SV=1) HSP 1 Score: 491.5 bits (1264), Expect = 8.7e-136 Identity = 250/369 (67.75%), Postives = 293/369 (79.40%), Query Frame = 1
BLAST of ClCG08G002740.1 vs. TAIR10
Match: AT1G43860.1 (AT1G43860.1 sequence-specific DNA binding transcription factors) HSP 1 Score: 461.1 bits (1185), Expect = 6.4e-130 Identity = 227/372 (61.02%), Postives = 286/372 (76.88%), Query Frame = 1
BLAST of ClCG08G002740.1 vs. NCBI nr
Match: gi|659133353|ref|XP_008466694.1| (PREDICTED: ribosome maturation protein SBDS [Cucumis melo]) HSP 1 Score: 688.7 bits (1776), Expect = 5.3e-195 Identity = 337/359 (93.87%), Postives = 351/359 (97.77%), Query Frame = 1
BLAST of ClCG08G002740.1 vs. NCBI nr
Match: gi|449458091|ref|XP_004146781.1| (PREDICTED: ribosome maturation protein SBDS [Cucumis sativus]) HSP 1 Score: 679.9 bits (1753), Expect = 2.5e-192 Identity = 330/359 (91.92%), Postives = 349/359 (97.21%), Query Frame = 1
BLAST of ClCG08G002740.1 vs. NCBI nr
Match: gi|1009169261|ref|XP_015903095.1| (PREDICTED: ribosome maturation protein SBDS [Ziziphus jujuba]) HSP 1 Score: 509.2 bits (1310), Expect = 5.8e-141 Identity = 251/358 (70.11%), Postives = 299/358 (83.52%), Query Frame = 1
BLAST of ClCG08G002740.1 vs. NCBI nr
Match: gi|703129116|ref|XP_010104287.1| (Ribosome maturation protein SBDS [Morus notabilis]) HSP 1 Score: 506.1 bits (1302), Expect = 4.9e-140 Identity = 259/362 (71.55%), Postives = 300/362 (82.87%), Query Frame = 1
BLAST of ClCG08G002740.1 vs. NCBI nr
Match: gi|672170251|ref|XP_008805180.1| (PREDICTED: ribosome maturation protein SBDS [Phoenix dactylifera]) HSP 1 Score: 501.9 bits (1291), Expect = 9.2e-139 Identity = 250/362 (69.06%), Postives = 303/362 (83.70%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
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