ClCG08G002740 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG08G002740
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Ribosome maturation protein SBDS
Location	CG_Chr08 : 6118715 .. 6122222 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTAAAACCCGTTAGGCTTTATATAAATAAACAAAGTGGAGAGACAAAACTTCTTCGTCTAAAATCAGTATTCTTTTTAAATCCAATCGCCAAATTTAACGATGTCCCGATCGCTGGTGCAGCCGATCGGGCAGAAGAGGCTGACCAACGTTGCGGTGGTTCGTTTGAAGAAACACGGTCTTCGTTTCGAGATTGCCTGTTACAAGAACAAGGTCCTTTCTTGGCGCTCTGGCGTGTAAGCTCCCTTAAACCCTATCGTTTCTCTCTTCAATTCTCGGATTTTCTCTTGTTGTTTGATGGGTTCTATGCTTTCAAGACGGTATAGCTTTGATGTTAGGACGGAAATTACATCCAATTTAAGATTCATTAGTTGAATGGAGGATCCTCTTGGCCAACGGATTAGGAAAAGCCTCTTCTAATTGCTAGTGACTACTTTAGTTGGAGTGGTAAGTTATTAAAGTATATAGAGATTTTTATACAGATGACCTATTCTCAGCTCTAAATGATTGATGATCCATCCCAGAAATAAATGAAATATAATCTTTTGCTTAATTTGCGATTGGGATAGTCATGTCTATAATAGCCTCAACTCAATGACCATGTCTATTGCGATCTTCATTTTTTCCCATTTTGTCGTACTTTGTCATGAATATTGTAGTAGAGTGGAGAAAAATGAAGATTGCGACAGACATAGTCGTCGTGTGATCCCTAACGCGATACGGTAGTGTACTTTGACGTAAGCAGAAGATTAGATTTCATTTATATTTGGAGATGGGTCATTAATCATTTAGAGGCTGAGAATGGGGACTATCTGCACGAAAATCTCTAGATATGCATATAAAAAATCAGATGAACTTTGAACTTCAGGGCTCGAGTTGCAATTGCATCAAAGTACGAAGTTGTATTTTGCAGTTTTCCTTTCGTTATTCATTTTCCATCCCGATGCATACTATTTGACCTACTTTGGTACTGATTTATATTTTATTATTTGTCTTGTATGCTGTGTTGACTATGAACTTGATAATGTATGTTGTGACAGGGAAAAGGATTTGGATGAGGTCTTGCAATCACAAATTGTTTATTCGAATGTTTCGAAAGGAGTTCTTGCAAAAACAAAAGATTTAAAAGTAGCTTTTGGTACAGATGATCAGATGGAAATTTGTTTGAAGGTTTGTGGAATTCCTGAATAAATGTTTTTTGTATTGTTTTTATATTGCATCTAGTACTTTATGGATAATTCTTTTTATCAGTGTATGCTTTTGTTGTCATTTCTTATGAACTGATGAGATTATCAACTTGCTGGTACTAGATTCTTAAAGAAGGGGAACTTCAAATTGCAGGGAAGGAGAGGGAGGCTCAATTATCTAATCAGTTTCGTGATATCGCAACCATTGTTATGCAGAAGACCTTCAATCCTGAAACTAAACGCCCTTACACCATTAGCATGATTGAGCGACTCCTGCGTGAAATTCATTTTGCTGTTGATCCAAACCACAGCTCAAAGAAACAGGTAGGTTGATACTTTTTGCTGAATGTGAGATTAACATTCTTCTGCTTTCAATTTGTATAACTCTAAATTCAAGGCCGCAATTTTCAGCTGATATTTTTTATGATATGTAGGCACTAGAGGTCATTCATGAGCTCCAGAAACAGTTCCCAATTAAACGTTCGCCTATGAGAATACGATATGTTGTACCTGAACAGAACTCCCCATCTCTCCTTGATAAGTTAAATGCTTGGAGTGCTAGTATCATTTCCAATGATCAGTCTGGAAATCAGCAACGAAGCATTGTGAGTCTGAGTTTTTTCATTGCAATTTTTGTTTTGCATATCTTCTCCAATTTGCTAATGATATCATCGTTTCACTCCTCCTAGAACAAGTTGAATTCTTGCTTTGATTGTTGGTTCCTGCATGGGTGTCAATGTGCCATTAGTTGCCCATTTTGGACTATGCCATGTTTGTCTGTACTATATTGCATGATAAATCCTAGGAACGAAGATTTCAGGAAGCAAACCATTTCTACCTAGCCACGAACATAGACAATTCACTTTTGTTTTTGATGTGATAAGAATTTCAAGCAAGGTCTAGGAATTTAGTTGTGCTTAAAACCAGCTAGTGTTAAGAGACATTGAAATGTGAATGTTATTTACTTATATTATTGTGTCATCGTTTCATTTTGCTGGAGTGGGGTTGAGAGAAGGAAATTATTTGAAACACTATAGTTAGGACACTAAGGTATATATATATACACATATATACATATATATGTGTATATATATAATTGCCATCATCACGGTAATCAAAGAGGTGTATGAGTACAGAGCTAGGTAATGGTAAAAGCCCTTCTATATTATACTTATCATCTGTTTGTTATGGTAAACATCTTTCTATTCATCATATTGAATGCTGTAGTTTTAAGCAGTAATCTTGGTAATGATGAATTACTTGAAGTACGCACGAGCCGTTCAGAACTATTGGTGTTCATTTATTATTAGCTAATGCTTGTTTTGCTGCCTTAGTAGTTGTTTTTATGTAGCCAAGTTTCATGATCTCTCCGGAGTAATTTCCTGTTTTTCTACATCTCTTTGTTGGGTCAAATGCGCAGTGATCAAGTTTAGACTATTAAATTGGTTATTGATTAGTAACTTCATATGTGCCCTTCTCATTAAGTACTGACAATGCTTTGCAGTAGGCTGCCTTCCATAATACAGGCACTGGGAACTGAGTTTTTGTGTTTGGTTGTTGCAACAGATTTGTGAATTGGATCCTAGCTTTTATCGAGACTGTAATCCATTAATGAGTGAACTACAAGGCAGATTTGAAGTTCTCTCTTTTTGTTTGCACGAGGAAGGGGACACCAATGTGGATCAATACGACGATGATTATGAGAATATGGAACTGCCACCAAGGCAAGTAAAGGAACCGGAATCGGCTATTCCCCAGCTAAGTGAAGCTTTACAAAAGCAGACAATCTCTGTCAATGGCGAGAATGCCCCGAAGGAAGGAAAACGCTGCAGCACATGCAACATAGTTGTGGGGGATGCTACTCAGTTTAGAGAGCATCACAAGAGTGAATGGCATAAGCATAATGTCAAGCGCAAAACCAAGAATCTTCCACCTTTGACTGAAGAAGAGTGCACGGTAGAATTGGCAATGGGCGAGTCGGAGTCCGACCTGAAGGAGTATTCATTTTGAACTACTGGTGTGTTATGCTTTGTTGAATTGGTATGAGCTTTTTGTACTTCAGTTTTGGTGCTAAATAGTAAGAAACAATACTGCAATTGGCTAGTTATAGCTTACACATATTGGACGGTCTCATGGCATGTCACATGCTGCCACAATCGCTAAGTTTTCATAGTTTTCTTCGTTTTAATGTTGAAGTGATGTTTAATATTGAATCAAGATCATGTGTATACATTTTGCCTTTAAGATATATATACAGGAAGTAACCTTTTTGACTTTGTACTCGAATAACCTGTAATGCAACTATGCACGGAATGCAAATCAG

mRNA sequence

GTAAAACCCGTTAGGCTTTATATAAATAAACAAAGTGGAGAGACAAAACTTCTTCGTCTAAAATCAGTATTCTTTTTAAATCCAATCGCCAAATTTAACGATGTCCCGATCGCTGGTGCAGCCGATCGGGCAGAAGAGGCTGACCAACGTTGCGGTGGTTCGTTTGAAGAAACACGGTCTTCGTTTCGAGATTGCCTGTTACAAGAACAAGGTCCTTTCTTGGCGCTCTGGCGTGGAAAAGGATTTGGATGAGGTCTTGCAATCACAAATTGTTTATTCGAATGTTTCGAAAGGAGTTCTTGCAAAAACAAAAGATTTAAAAGTAGCTTTTGGTACAGATGATCAGATGGAAATTTGTTTGAAGATTCTTAAAGAAGGGGAACTTCAAATTGCAGGGAAGGAGAGGGAGGCTCAATTATCTAATCAGTTTCGTGATATCGCAACCATTGTTATGCAGAAGACCTTCAATCCTGAAACTAAACGCCCTTACACCATTAGCATGATTGAGCGACTCCTGCGTGAAATTCATTTTGCTGTTGATCCAAACCACAGCTCAAAGAAACAGGCACTAGAGGTCATTCATGAGCTCCAGAAACAGTTCCCAATTAAACGTTCGCCTATGAGAATACGATATGTTGTACCTGAACAGAACTCCCCATCTCTCCTTGATAAGTTAAATGCTTGGAGTGCTAGTATCATTTCCAATGATCAGTCTGGAAATCAGCAACGAAGCATTATTTGTGAATTGGATCCTAGCTTTTATCGAGACTGTAATCCATTAATGAGTGAACTACAAGGCAGATTTGAAGTTCTCTCTTTTTGTTTGCACGAGGAAGGGGACACCAATGTGGATCAATACGACGATGATTATGAGAATATGGAACTGCCACCAAGGCAAGTAAAGGAACCGGAATCGGCTATTCCCCAGCTAAGTGAAGCTTTACAAAAGCAGACAATCTCTGTCAATGGCGAGAATGCCCCGAAGGAAGGAAAACGCTGCAGCACATGCAACATAGTTGTGGGGGATGCTACTCAGTTTAGAGAGCATCACAAGAGTGAATGGCATAAGCATAATGTCAAGCGCAAAACCAAGAATCTTCCACCTTTGACTGAAGAAGAGTGCACGGTAGAATTGGCAATGGGCGAGTCGGAGTCCGACCTGAAGGAGTATTCATTTTGAACTACTGGTGTGTTATGCTTTGTTGAATTGGTATGAGCTTTTTGTACTTCAGTTTTGGTGCTAAATAGTAAGAAACAATACTGCAATTGGCTAGTTATAGCTTACACATATTGGACGGTCTCATGGCATGTCACATGCTGCCACAATCGCTAAGTTTTCATAGTTTTCTTCGTTTTAATGTTGAAGTGATGTTTAATATTGAATCAAGATCATGTGTATACATTTTGCCTTTAAGATATATATACAGGAAGTAACCTTTTTGACTTTGTACTCGAATAACCTGTAATGCAACTATGCACGGAATGCAAATCAG

Coding sequence (CDS)

ATGTCCCGATCGCTGGTGCAGCCGATCGGGCAGAAGAGGCTGACCAACGTTGCGGTGGTTCGTTTGAAGAAACACGGTCTTCGTTTCGAGATTGCCTGTTACAAGAACAAGGTCCTTTCTTGGCGCTCTGGCGTGGAAAAGGATTTGGATGAGGTCTTGCAATCACAAATTGTTTATTCGAATGTTTCGAAAGGAGTTCTTGCAAAAACAAAAGATTTAAAAGTAGCTTTTGGTACAGATGATCAGATGGAAATTTGTTTGAAGATTCTTAAAGAAGGGGAACTTCAAATTGCAGGGAAGGAGAGGGAGGCTCAATTATCTAATCAGTTTCGTGATATCGCAACCATTGTTATGCAGAAGACCTTCAATCCTGAAACTAAACGCCCTTACACCATTAGCATGATTGAGCGACTCCTGCGTGAAATTCATTTTGCTGTTGATCCAAACCACAGCTCAAAGAAACAGGCACTAGAGGTCATTCATGAGCTCCAGAAACAGTTCCCAATTAAACGTTCGCCTATGAGAATACGATATGTTGTACCTGAACAGAACTCCCCATCTCTCCTTGATAAGTTAAATGCTTGGAGTGCTAGTATCATTTCCAATGATCAGTCTGGAAATCAGCAACGAAGCATTATTTGTGAATTGGATCCTAGCTTTTATCGAGACTGTAATCCATTAATGAGTGAACTACAAGGCAGATTTGAAGTTCTCTCTTTTTGTTTGCACGAGGAAGGGGACACCAATGTGGATCAATACGACGATGATTATGAGAATATGGAACTGCCACCAAGGCAAGTAAAGGAACCGGAATCGGCTATTCCCCAGCTAAGTGAAGCTTTACAAAAGCAGACAATCTCTGTCAATGGCGAGAATGCCCCGAAGGAAGGAAAACGCTGCAGCACATGCAACATAGTTGTGGGGGATGCTACTCAGTTTAGAGAGCATCACAAGAGTGAATGGCATAAGCATAATGTCAAGCGCAAAACCAAGAATCTTCCACCTTTGACTGAAGAAGAGTGCACGGTAGAATTGGCAATGGGCGAGTCGGAGTCCGACCTGAAGGAGTATTCATTTTGA

Protein sequence

MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKVAFGTDDQMEICLKILKEGELQIAGKEREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLLREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYVVPEQNSPSLLDKLNAWSASIISNDQSGNQQRSIICELDPSFYRDCNPLMSELQGRFEVLSFCLHEEGDTNVDQYDDDYENMELPPRQVKEPESAIPQLSEALQKQTISVNGENAPKEGKRCSTCNIVVGDATQFREHHKSEWHKHNVKRKTKNLPPLTEEECTVELAMGESESDLKEYSF

Homology

[Close]

BLAST of ClCG08G002740 vs. Swiss-Prot
Match: SBDS_MOUSE (Ribosome maturation protein SBDS OS=Mus musculus GN=Sbds PE=1 SV=4)

HSP 1 Score: 253.8 bits (647), Expect = 2.7e-66
Identity = 135/247 (54.66%), Postives = 174/247 (70.45%), Query Frame = 1


Query: 4   SLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVS 63
           S+  P  Q RLTNVAVVR+K+ G RFEIACYKNKV+ WRSGVEKDLDEVLQ+  V+ NVS
Sbjct: 2   SIFTPTNQIRLTNVAVVRMKRGGKRFEIACYKNKVVGWRSGVEKDLDEVLQTHSVFVNVS 61

Query: 64  KGVLAKTKDLKVAFGTDDQMEICLKILKEGELQIAGKEREAQLSNQFRDIATIVMQKTFN 123
           KG +AK +DL  AFGTDDQ EIC +IL +GE+Q++ KER  QL   FRDIATIV  K  N
Sbjct: 62  KGQVAKKEDLISAFGTDDQTEICKQILTKGEVQVSDKERHTQLEQMFRDIATIVADKCVN 121

Query: 124 PETKRPYTISMIERLLREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYVVPEQ 183
           PETKRPYT+ +IER +++IH++V PN S+K+QALEVI +L+++  I+R+ MR+R+++P  
Sbjct: 122 PETKRPYTVILIERAMKDIHYSVKPNKSTKQQALEVIKQLKEKMKIERAHMRLRFILPVN 181

Query: 184 NSPSLLDKLNAWSASIISNDQSGNQQRSIICELDPSFYRDCNPLM-SELQGR--FEVLSF 243
               L +KL      + S D S  QQ  I+C +DP  +R+ + L+  E +GR   EVLS 
Sbjct: 182 EGKKLKEKLKPLMKVVESEDYS--QQLEIVCLIDPGCFREIDELIKKETKGRGSLEVLSL 241

Query: 244 CLHEEGD 248
              EEGD
Sbjct: 242 KDVEEGD 246

[Close]

BLAST of ClCG08G002740 vs. Swiss-Prot
Match: SBDS_RAT (Ribosome maturation protein SBDS OS=Rattus norvegicus GN=Sbds PE=2 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 6.1e-66
Identity = 133/247 (53.85%), Postives = 174/247 (70.45%), Query Frame = 1


Query: 4   SLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVS 63
           S+  P  Q RLTNVAVVR+K+ G RFEIACYKNKV+ WRSGVEKDLDEVLQ+  V+ NVS
Sbjct: 2   SIFTPTNQIRLTNVAVVRMKRGGKRFEIACYKNKVVGWRSGVEKDLDEVLQTHSVFVNVS 61

Query: 64  KGVLAKTKDLKVAFGTDDQMEICLKILKEGELQIAGKEREAQLSNQFRDIATIVMQKTFN 123
           KG +AK +DL  AFGTDDQ EIC +IL +GE+Q++ KER  QL   FRDIATIV  K  N
Sbjct: 62  KGQVAKKEDLISAFGTDDQTEICKQILTKGEVQVSDKERHTQLEQMFRDIATIVADKCVN 121

Query: 124 PETKRPYTISMIERLLREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYVVPEQ 183
           PETKRPYT+ +IER +++IH++V PN S+K+QALEVI +L+++  I+R+ MR+R+++P  
Sbjct: 122 PETKRPYTVILIERAMKDIHYSVKPNKSTKQQALEVIKQLKEKMKIERAHMRLRFLLPVN 181

Query: 184 NSPSLLDKLNAWSASIISNDQSGNQQRSIICELDPSFYRDCNPLM---SELQGRFEVLSF 243
               L +KL      + S D S  QQ  I+C +DP  +R+ + L+   ++ +G  EVLS 
Sbjct: 182 EGKKLKEKLKPLMKVVESEDYS--QQLEIVCLIDPGCFREIDELIKKETKGKGSLEVLSL 241

Query: 244 CLHEEGD 248
              EEGD
Sbjct: 242 KDVEEGD 246

[Close]

BLAST of ClCG08G002740 vs. Swiss-Prot
Match: SBDS_BOVIN (Ribosome maturation protein SBDS OS=Bos taurus GN=SBDS PE=2 SV=1)

HSP 1 Score: 251.9 bits (642), Expect = 1.0e-65
Identity = 133/247 (53.85%), Postives = 173/247 (70.04%), Query Frame = 1


Query: 4   SLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVS 63
           S+  P  Q RLTNVAVVR+K+ G RFEIACYKNKV+ WRSGVEKDLDEVLQ+  V+ NVS
Sbjct: 2   SIFTPTNQIRLTNVAVVRMKRAGKRFEIACYKNKVVGWRSGVEKDLDEVLQTHSVFVNVS 61

Query: 64  KGVLAKTKDLKVAFGTDDQMEICLKILKEGELQIAGKEREAQLSNQFRDIATIVMQKTFN 123
           KG +AK +DL  AFGTDDQ EIC +IL +GE+Q++ KER  QL   FRDIATIV  K  N
Sbjct: 62  KGQVAKKEDLISAFGTDDQTEICKQILTKGEVQVSDKERHTQLEQMFRDIATIVADKCVN 121

Query: 124 PETKRPYTISMIERLLREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYVVPEQ 183
           PETKRPYT+ +IER +++IH++V PN S+K+QALEVI +L+++  I+R+ MR+R+++P  
Sbjct: 122 PETKRPYTVILIERAMKDIHYSVKPNKSTKQQALEVIKQLKEKMKIERAHMRLRFILPVN 181

Query: 184 NSPSLLDKLNAWSASIISNDQSGNQQRSIICELDPSFYRDCNPLM---SELQGRFEVLSF 243
               L +KL      I S D    QQ  I+C +DP  +R+ + L+   ++ +G  EVLS 
Sbjct: 182 EGKKLKEKLKPLIKVIESEDY--GQQLEIVCLIDPGCFREVDELIKKETKGKGSLEVLSL 241

Query: 244 CLHEEGD 248
              EEGD
Sbjct: 242 KDVEEGD 246

[Close]

BLAST of ClCG08G002740 vs. Swiss-Prot
Match: SBDS_HUMAN (Ribosome maturation protein SBDS OS=Homo sapiens GN=SBDS PE=1 SV=4)

HSP 1 Score: 247.7 bits (631), Expect = 2.0e-64
Identity = 131/247 (53.04%), Postives = 172/247 (69.64%), Query Frame = 1


Query: 4   SLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVS 63
           S+  P  Q RLTNVAVVR+K+ G RFEIACYKNKV+ WRSGVEKDLDEVLQ+  V+ NVS
Sbjct: 2   SIFTPTNQIRLTNVAVVRMKRAGKRFEIACYKNKVVGWRSGVEKDLDEVLQTHSVFVNVS 61

Query: 64  KGVLAKTKDLKVAFGTDDQMEICLKILKEGELQIAGKEREAQLSNQFRDIATIVMQKTFN 123
           KG +AK +DL  AFGTDDQ EIC +IL +GE+Q++ KER  QL   FRDIATIV  K  N
Sbjct: 62  KGQVAKKEDLISAFGTDDQTEICKQILTKGEVQVSDKERHTQLEQMFRDIATIVADKCVN 121

Query: 124 PETKRPYTISMIERLLREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYVVPEQ 183
           PETKRPYT+ +IER +++IH++V  N S+K+QALEVI +L+++  I+R+ MR+R+++P  
Sbjct: 122 PETKRPYTVILIERAMKDIHYSVKTNKSTKQQALEVIKQLKEKMKIERAHMRLRFILPVN 181

Query: 184 NSPSLLDKLNAWSASIISNDQSGNQQRSIICELDPSFYRDCNPLM---SELQGRFEVLSF 243
               L +KL      I S D    QQ  I+C +DP  +R+ + L+   ++ +G  EVL+ 
Sbjct: 182 EGKKLKEKLKPLIKVIESEDY--GQQLEIVCLIDPGCFREIDELIKKETKGKGSLEVLNL 241

Query: 244 CLHEEGD 248
              EEGD
Sbjct: 242 KDVEEGD 246

[Close]

BLAST of ClCG08G002740 vs. Swiss-Prot
Match: SBDS_PONAB (Ribosome maturation protein SBDS OS=Pongo abelii GN=SBDS PE=2 SV=1)

HSP 1 Score: 247.7 bits (631), Expect = 2.0e-64
Identity = 131/247 (53.04%), Postives = 172/247 (69.64%), Query Frame = 1


Query: 4   SLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVS 63
           S+  P  Q RLTNVAVVR+K+ G RFEIACYKNKV+ WRSGVEKDLDEVLQ+  V+ NVS
Sbjct: 2   SIFTPTNQIRLTNVAVVRMKRAGKRFEIACYKNKVVGWRSGVEKDLDEVLQTHSVFVNVS 61

Query: 64  KGVLAKTKDLKVAFGTDDQMEICLKILKEGELQIAGKEREAQLSNQFRDIATIVMQKTFN 123
           KG +AK +DL  AFGTDDQ EIC +IL +GE+Q++ KER  QL   FRDIATIV  K  N
Sbjct: 62  KGQVAKKEDLISAFGTDDQTEICKQILTKGEVQVSDKERHTQLEQMFRDIATIVADKCVN 121

Query: 124 PETKRPYTISMIERLLREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYVVPEQ 183
           PETKRPYT+ +IER +++IH++V  N S+K+QALEVI +L+++  I+R+ MR+R+++P  
Sbjct: 122 PETKRPYTVILIERAMKDIHYSVKTNKSTKQQALEVIKQLKEKMKIERAHMRLRFILPVN 181

Query: 184 NSPSLLDKLNAWSASIISNDQSGNQQRSIICELDPSFYRDCNPLM---SELQGRFEVLSF 243
               L +KL      I S D    QQ  I+C +DP  +R+ + L+   ++ +G  EVL+ 
Sbjct: 182 EGKKLKEKLKPLIKVIESEDY--GQQLEIVCLIDPGCFREIDELIKKETKGKGSLEVLNL 241

Query: 244 CLHEEGD 248
              EEGD
Sbjct: 242 KDVEEGD 246

[Close]

BLAST of ClCG08G002740 vs. TrEMBL
Match: A0A0A0KIY6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G397690 PE=4 SV=1)

HSP 1 Score: 679.9 bits (1753), Expect = 1.7e-192
Identity = 330/359 (91.92%), Postives = 349/359 (97.21%), Query Frame = 1


Query: 1   MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYS 60
           MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVE+DLDEVLQSQIVYS
Sbjct: 1   MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVERDLDEVLQSQIVYS 60

Query: 61  NVSKGVLAKTKDLKVAFGTDDQMEICLKILKEGELQIAGKEREAQLSNQFRDIATIVMQK 120
           NVSKGVLAKTK+LK AFGTDDQ EICLKILKEGELQ+AGKEREAQLSNQFRDIATIVMQK
Sbjct: 61  NVSKGVLAKTKELKAAFGTDDQTEICLKILKEGELQVAGKEREAQLSNQFRDIATIVMQK 120

Query: 121 TFNPETKRPYTISMIERLLREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYVV 180
           TFNPETKRPYTISMIERL+R+IHFAVDPNHSSKKQALEVIHELQK FPIKRSPMR+RY+V
Sbjct: 121 TFNPETKRPYTISMIERLMRDIHFAVDPNHSSKKQALEVIHELQKHFPIKRSPMRLRYIV 180

Query: 181 PEQNSPSLLDKLNAWSASIISNDQSGNQQRSIICELDPSFYRDCNPLMSELQGRFEVLSF 240
           PEQN PSLLDKLNAWSASI+S+DQSGNQQRSIICELDPSFYRDCNPLMSEL GRFEVLSF
Sbjct: 181 PEQNVPSLLDKLNAWSASIVSDDQSGNQQRSIICELDPSFYRDCNPLMSELHGRFEVLSF 240

Query: 241 CLHEEGDTNVDQYDDDYENMELPPRQVKEPESAIPQLSEALQKQTISVNGENAPKEGKRC 300
           CLHEEGDTNVDQY+DDYEN+ELPPRQ+KE +S IPQLSEALQKQTIS+N +NAPKEGKRC
Sbjct: 241 CLHEEGDTNVDQYEDDYENVELPPRQLKETKSVIPQLSEALQKQTISINSDNAPKEGKRC 300

Query: 301 STCNIVVGDATQFREHHKSEWHKHNVKRKTKNLPPLTEEECTVELAMGESESDLKEYSF 360
           STCN+ VGD T+FREH+KSEWHKHNVKRKTKNLPPLTEEECTVELAMG+SESDLKEYSF
Sbjct: 301 STCNVAVGDVTKFREHYKSEWHKHNVKRKTKNLPPLTEEECTVELAMGDSESDLKEYSF 359

[Close]

BLAST of ClCG08G002740 vs. TrEMBL
Match: W9RW90_9ROSA (Ribosome maturation protein SBDS OS=Morus notabilis GN=L484_005390 PE=4 SV=1)

HSP 1 Score: 506.1 bits (1302), Expect = 3.4e-140
Identity = 259/362 (71.55%), Postives = 300/362 (82.87%), Query Frame = 1


Query: 1   MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYS 60
           MSR LVQP+GQKRLTNVAVVRLKK G+RFEIACYKNKVLSWRSGVEKDLDEVLQSQ VYS
Sbjct: 1   MSRILVQPVGQKRLTNVAVVRLKKLGMRFEIACYKNKVLSWRSGVEKDLDEVLQSQTVYS 60

Query: 61  NVSKGVLAKTKDLKVAFGTDDQMEICLKILKEGELQIAGKEREAQLSNQFRDIATIVMQK 120
           NVSKG+LAK+KDL  AFGTDDQ +ICL+IL +GELQIAGKERE+QLS+QFRDIATIVMQK
Sbjct: 61  NVSKGILAKSKDLIAAFGTDDQAKICLEILDKGELQIAGKERESQLSSQFRDIATIVMQK 120

Query: 121 TFNPETKRPYTISMIERLLREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYVV 180
           T+NPET+RPYTI+MIERL+REIHFAVDP   SKKQALEVIHELQK FPIKRSPMR+R  V
Sbjct: 121 TYNPETQRPYTINMIERLMREIHFAVDPISGSKKQALEVIHELQKHFPIKRSPMRLRLSV 180

Query: 181 PEQNSPSLLDKLNAWSASIISNDQSGNQQRSIICELDPSFYRDCNPLMSELQGRFEVLSF 240
           PEQ+S SL++KLNAWSA I S DQSG+ Q  IICELDP  YR+C  LM  LQGRFEVL+ 
Sbjct: 181 PEQSSSSLMEKLNAWSAKIASKDQSGS-QLYIICELDPGIYRECEALMINLQGRFEVLAL 240

Query: 241 CLHEEGDTNVDQYDDDYENMELPPRQVKEPESAIPQLSEALQKQTISVNGENAPK-EGK- 300
            +H  GDT+VDQY DD+E    P    K+   ++ +LS+ LQKQ+IS +       EGK 
Sbjct: 241 SVHAGGDTHVDQY-DDHEGQ--PSHVPKDATDSVAKLSDKLQKQSISSSSATTTAGEGKQ 300

Query: 301 -RCSTCNIVVGDATQFREHHKSEWHKHNVKRKTKNLPPLTEEECTVELAMGESESDLKEY 360
            +C TCN  VGD+ QFREH KSEWHKHN++RKT+NLPPLTEEEC  ++ +G+S++DLKEY
Sbjct: 301 SKCGTCNAFVGDSKQFREHFKSEWHKHNLRRKTRNLPPLTEEECMTDMEIGDSKADLKEY 358

[Close]

BLAST of ClCG08G002740 vs. TrEMBL
Match: A0A0D2RB94_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G083500 PE=4 SV=1)

HSP 1 Score: 494.6 bits (1272), Expect = 1.0e-136
Identity = 247/369 (66.94%), Postives = 294/369 (79.67%), Query Frame = 1


Query: 1   MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYS 60
           MS++LVQPIGQKRLTNVAVVRLKKHG+RFEIACYKNKVLSWRS VEKDLDEVLQS  VYS
Sbjct: 1   MSKTLVQPIGQKRLTNVAVVRLKKHGMRFEIACYKNKVLSWRSRVEKDLDEVLQSHTVYS 60

Query: 61  NVSKGVLAKTKDLKVAFGTDDQMEICLKILKEGELQIAGKEREAQLSNQFRDIATIVMQK 120
           NVSKGVLAKTKDL  AFGTDDQ +ICL+IL++GELQ+AGKERE+Q S+QFRDIATIVMQK
Sbjct: 61  NVSKGVLAKTKDLVAAFGTDDQTKICLEILEKGELQVAGKERESQFSSQFRDIATIVMQK 120

Query: 121 TFNPETKRPYTISMIERLLREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYVV 180
           T NPET+RPYTISMIERL+ EIHFAVDPN SSKKQALEVI +LQ  FPIKRSPMR+R +V
Sbjct: 121 TINPETQRPYTISMIERLMHEIHFAVDPNSSSKKQALEVIRQLQNNFPIKRSPMRLRLIV 180

Query: 181 PEQNSPSLLDKLNAWSASIISNDQSGNQQRSIICELDPSFYRDCNPLMSELQGRFEVLSF 240
           P QN  SL +KLN W A+I+S D+SG  Q S+ICE++P  +R+C+ L+  LQGR E+LS 
Sbjct: 181 PGQNFYSLCEKLNEWGATIVSKDESGT-QLSVICEIEPGLFRECDSLVRNLQGRLEILSV 240

Query: 241 CLHEEGDTNVDQYDDDYENMELPPRQVKEPESAIP--------QLSEALQKQTISVNGEN 300
            +H EGDT VD YDD+  + +LP    +   S +P        QLSE +QK TIS    N
Sbjct: 241 SVHAEGDTQVDNYDDEDISSQLPKDSAESASSRLPPESSDSVVQLSEKIQKHTISSGNGN 300

Query: 301 APKEGK--RCSTCNIVVGDATQFREHHKSEWHKHNVKRKTKNLPPLTEEECTVELAMGES 360
           A  E K  +CSTCN  VGD+ Q+R+H KSEWHKHN+KRKT+ LPPLT EEC  ++ + +S
Sbjct: 301 AEGEAKQHKCSTCNAFVGDSKQYRDHFKSEWHKHNLKRKTRQLPPLTAEECLADVELSDS 360

[Close]

BLAST of ClCG08G002740 vs. TrEMBL
Match: V4V6B7_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10001639mg PE=4 SV=1)

HSP 1 Score: 491.9 bits (1265), Expect = 6.7e-136
Identity = 246/363 (67.77%), Postives = 294/363 (80.99%), Query Frame = 1


Query: 1   MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYS 60
           MS++LVQP+GQKRLTNVAVVRLKKHG+RFEIACYKNKVLSWRS VEKDLDEVLQS  VYS
Sbjct: 1   MSKTLVQPVGQKRLTNVAVVRLKKHGMRFEIACYKNKVLSWRSQVEKDLDEVLQSHTVYS 60

Query: 61  NVSKGVLAKTKDLKVAFGTDDQMEICLKILKEGELQIAGKEREAQLSNQFRDIATIVMQK 120
           NVSKG+LAK+KDL  AFGTDDQ +ICL+IL++GELQ+AGKERE Q SNQFRDIATIVMQK
Sbjct: 61  NVSKGILAKSKDLIAAFGTDDQTKICLEILEKGELQVAGKERETQFSNQFRDIATIVMQK 120

Query: 121 TFNPETKRPYTISMIERLLREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYVV 180
           T N ET+RPYTISMIERL+ EIHFAVDPN SSKKQALEVI ELQK FPIKRSPMR+   V
Sbjct: 121 TVNSETQRPYTISMIERLMHEIHFAVDPNSSSKKQALEVIRELQKHFPIKRSPMRVGLTV 180

Query: 181 PEQNSPSLLDKLNAWSASIISNDQSGNQQRSIICELDPSFYRDCNPLMSELQGRFEVLSF 240
           PEQN  SL++KL+AW ASI+S D SG+ Q S+ICE++P  +RDC+ L+  LQGR E+L+ 
Sbjct: 181 PEQNISSLMEKLDAWDASIVSKDNSGS-QLSLICEMEPGLFRDCDTLLRNLQGRLEILAV 240

Query: 241 CLHEEGDTNVDQYDDDYENMELPPRQVKEPESAIPQLSEALQKQTISVNGENAPKEGK-- 300
            +H EGDT+VD YDD  +   LPP   KE    + +LSE ++KQ++S    N   EGK  
Sbjct: 241 SVHAEGDTSVDHYDDHEDVPSLPP---KESADDVLKLSEKIEKQSLSSGNGNT--EGKVK 300

Query: 301 --RCSTCNIVVGDATQFREHHKSEWHKHNVKRKTKNLPPLTEEECTVELAMGESESDLKE 360
             +CSTCN  VGDA Q+R+H KS+WHKHN+KRKT+ LPPLT EEC  ++ + +S++DLKE
Sbjct: 301 QNKCSTCNAYVGDAKQYRDHFKSDWHKHNLKRKTRQLPPLTVEECLADMELDDSKADLKE 357

[Close]

BLAST of ClCG08G002740 vs. TrEMBL
Match: A0A061FPW2_THECC (Sequence-specific DNA binding transcription factors OS=Theobroma cacao GN=TCM_035364 PE=4 SV=1)

HSP 1 Score: 491.5 bits (1264), Expect = 8.7e-136
Identity = 250/369 (67.75%), Postives = 293/369 (79.40%), Query Frame = 1


Query: 1   MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYS 60
           MS++LVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRS VEKDLDEVLQS  VY+
Sbjct: 1   MSKTLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSRVEKDLDEVLQSHTVYA 60

Query: 61  NVSKGVLAKTKDLKVAFGTDDQMEICLKILKEGELQIAGKEREAQLSNQFRDIATIVMQK 120
           NVSKGVLAKTKDL  AFGTDDQ  ICL+IL++GELQIAGKERE+Q S+QFRDIATIVMQK
Sbjct: 61  NVSKGVLAKTKDLVAAFGTDDQTNICLEILEKGELQIAGKERESQFSSQFRDIATIVMQK 120

Query: 121 TFNPETKRPYTISMIERLLREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYVV 180
           T NPET+RPYTISMIERL+ EIHFAVDP++SSKKQALEVI ELQK FPIKRSPMR+R  V
Sbjct: 121 TINPETQRPYTISMIERLMHEIHFAVDPHNSSKKQALEVIRELQKNFPIKRSPMRLRITV 180

Query: 181 PEQNSPSLLDKLNAWSASIISNDQSGNQQRSIICELDPSFYRDCNPLMSELQGRFEVLSF 240
           P QN  SL +KLN WSA+I+S ++SG+ Q SIICE++P  +R+C+ L+   QGR E+L+ 
Sbjct: 181 PGQNLHSLSEKLNEWSATIVSKEESGS-QLSIICEMEPGIFRECDALVRNSQGRLEILAV 240

Query: 241 CLHEEGDTNVDQYDDDYENMELPPRQVKEPESAIP--------QLSEALQKQTISVNGEN 300
            +H EGDT VD YDD+     LP        S +P        QLSE +QKQTIS   EN
Sbjct: 241 SVHAEGDTQVDLYDDEDIASHLPKESADSAPSNLPQKSTDSVLQLSEKMQKQTISSGNEN 300

Query: 301 APKEGK--RCSTCNIVVGDATQFREHHKSEWHKHNVKRKTKNLPPLTEEECTVELAMGES 360
           A  E K  +CSTC   VGD+ Q+R+H KSEWHKHN+KRKT+ LPPLT EEC  ++ M +S
Sbjct: 301 AEGEVKQQKCSTCKAFVGDSKQYRDHFKSEWHKHNLKRKTRQLPPLTAEECLADMEMSDS 360

[Close]

BLAST of ClCG08G002740 vs. TAIR10
Match: AT1G43860.1 (AT1G43860.1 sequence-specific DNA binding transcription factors)

HSP 1 Score: 461.1 bits (1185), Expect = 6.4e-130
Identity = 227/372 (61.02%), Postives = 286/372 (76.88%), Query Frame = 1


Query: 1   MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYS 60
           MS++LVQP+GQKRLTNVAVVRLKK G RFEIACYKNKVLSWRSGVEKD+DEVLQS  VYS
Sbjct: 1   MSKTLVQPVGQKRLTNVAVVRLKKQGNRFEIACYKNKVLSWRSGVEKDIDEVLQSHTVYS 60

Query: 61  NVSKGVLAKTKDLKVAFGTDDQMEICLKILKEGELQIAGKEREAQLSNQFRDIATIVMQK 120
           NVSKGVLAK+KDL  +FG+DD  +IC+ IL++GELQ+AGKERE+Q S+QFRDIATIVMQK
Sbjct: 61  NVSKGVLAKSKDLMKSFGSDDHTKICIDILEKGELQVAGKERESQFSSQFRDIATIVMQK 120

Query: 121 TFNPETKRPYTISMIERLLREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYVV 180
           T NPET+RPYTISM+ERL+ EIHFAVDP+ +SKKQAL+VI ELQK FPIKRSPMR+R  V
Sbjct: 121 TINPETQRPYTISMVERLMHEIHFAVDPHSNSKKQALDVIRELQKHFPIKRSPMRLRLTV 180

Query: 181 PEQNSPSLLDKLNAWSASIISNDQSGNQQRSIICELDPSFYRDCNPLMSELQGRFEVLSF 240
           P QN PSLL+KL  W  S++S D+SG Q  S +CE++P  +R+C+  +  +QGR E+L+ 
Sbjct: 181 PVQNFPSLLEKLKEWDGSVVSKDESGTQM-STVCEMEPGLFRECDSHVRSIQGRLEILAV 240

Query: 241 CLHEEGDTNVDQYDDDYENMELPPR--------QVKEPESAIPQLSEALQKQTISVNGE- 300
            +H EGDT++D Y D++++M L           + K+    + +LS+ LQKQ IS     
Sbjct: 241 SVHAEGDTSMDHY-DEHDDMALQTHKPLLPAETETKDLTDPVVELSKKLQKQEISTTDNI 300

Query: 301 ----NAPKEGKRCSTCNIVVGDATQFREHHKSEWHKHNVKRKTKNLPPLTEEECTVELAM 360
                  K+G +CSTCN  VG+A Q+REH KS+WHKHN+KRKT+ LPP++ +EC  E+ M
Sbjct: 301 KQEGGEEKKGTKCSTCNTFVGEAKQYREHCKSDWHKHNLKRKTRKLPPISADECMSEIDM 360

[Close]

BLAST of ClCG08G002740 vs. NCBI nr
Match: gi|659133353|ref|XP_008466694.1| (PREDICTED: ribosome maturation protein SBDS [Cucumis melo])

HSP 1 Score: 688.7 bits (1776), Expect = 5.3e-195
Identity = 337/359 (93.87%), Postives = 351/359 (97.77%), Query Frame = 1


Query: 1   MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYS 60
           MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYS
Sbjct: 1   MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYS 60

Query: 61  NVSKGVLAKTKDLKVAFGTDDQMEICLKILKEGELQIAGKEREAQLSNQFRDIATIVMQK 120
           NVSKGVLAKTKDLK AFGTDDQ EICLKILKEGELQ+AGKEREAQLSNQFRDIATIVMQK
Sbjct: 61  NVSKGVLAKTKDLKAAFGTDDQTEICLKILKEGELQVAGKEREAQLSNQFRDIATIVMQK 120

Query: 121 TFNPETKRPYTISMIERLLREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYVV 180
           TFNPETKRPYTISMIERL+REIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMR+RY+V
Sbjct: 121 TFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRLRYIV 180

Query: 181 PEQNSPSLLDKLNAWSASIISNDQSGNQQRSIICELDPSFYRDCNPLMSELQGRFEVLSF 240
           PEQN PSLLDKLNAWSASI+SNDQSGNQQRSIICELDPSFYRDCNPLMSEL GRFEVLSF
Sbjct: 181 PEQNVPSLLDKLNAWSASIVSNDQSGNQQRSIICELDPSFYRDCNPLMSELHGRFEVLSF 240

Query: 241 CLHEEGDTNVDQYDDDYENMELPPRQVKEPESAIPQLSEALQKQTISVNGENAPKEGKRC 300
           CLHEEGDTNVDQY+DDYEN+EL PRQ+KE ES+IPQLSEALQKQTISVN +NAPKEGKRC
Sbjct: 241 CLHEEGDTNVDQYEDDYENVELLPRQLKETESSIPQLSEALQKQTISVNSDNAPKEGKRC 300

Query: 301 STCNIVVGDATQFREHHKSEWHKHNVKRKTKNLPPLTEEECTVELAMGESESDLKEYSF 360
           STCN+ VGDAT+FREHHKS+WHKHNVKRKTKNLPPLTEEECTVELAMG+SESDLKEYSF
Sbjct: 301 STCNVAVGDATKFREHHKSDWHKHNVKRKTKNLPPLTEEECTVELAMGDSESDLKEYSF 359

[Close]

BLAST of ClCG08G002740 vs. NCBI nr
Match: gi|449458091|ref|XP_004146781.1| (PREDICTED: ribosome maturation protein SBDS [Cucumis sativus])

HSP 1 Score: 679.9 bits (1753), Expect = 2.5e-192
Identity = 330/359 (91.92%), Postives = 349/359 (97.21%), Query Frame = 1


Query: 1   MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYS 60
           MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVE+DLDEVLQSQIVYS
Sbjct: 1   MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVERDLDEVLQSQIVYS 60

Query: 61  NVSKGVLAKTKDLKVAFGTDDQMEICLKILKEGELQIAGKEREAQLSNQFRDIATIVMQK 120
           NVSKGVLAKTK+LK AFGTDDQ EICLKILKEGELQ+AGKEREAQLSNQFRDIATIVMQK
Sbjct: 61  NVSKGVLAKTKELKAAFGTDDQTEICLKILKEGELQVAGKEREAQLSNQFRDIATIVMQK 120

Query: 121 TFNPETKRPYTISMIERLLREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYVV 180
           TFNPETKRPYTISMIERL+R+IHFAVDPNHSSKKQALEVIHELQK FPIKRSPMR+RY+V
Sbjct: 121 TFNPETKRPYTISMIERLMRDIHFAVDPNHSSKKQALEVIHELQKHFPIKRSPMRLRYIV 180

Query: 181 PEQNSPSLLDKLNAWSASIISNDQSGNQQRSIICELDPSFYRDCNPLMSELQGRFEVLSF 240
           PEQN PSLLDKLNAWSASI+S+DQSGNQQRSIICELDPSFYRDCNPLMSEL GRFEVLSF
Sbjct: 181 PEQNVPSLLDKLNAWSASIVSDDQSGNQQRSIICELDPSFYRDCNPLMSELHGRFEVLSF 240

Query: 241 CLHEEGDTNVDQYDDDYENMELPPRQVKEPESAIPQLSEALQKQTISVNGENAPKEGKRC 300
           CLHEEGDTNVDQY+DDYEN+ELPPRQ+KE +S IPQLSEALQKQTIS+N +NAPKEGKRC
Sbjct: 241 CLHEEGDTNVDQYEDDYENVELPPRQLKETKSVIPQLSEALQKQTISINSDNAPKEGKRC 300

Query: 301 STCNIVVGDATQFREHHKSEWHKHNVKRKTKNLPPLTEEECTVELAMGESESDLKEYSF 360
           STCN+ VGD T+FREH+KSEWHKHNVKRKTKNLPPLTEEECTVELAMG+SESDLKEYSF
Sbjct: 301 STCNVAVGDVTKFREHYKSEWHKHNVKRKTKNLPPLTEEECTVELAMGDSESDLKEYSF 359

[Close]

BLAST of ClCG08G002740 vs. NCBI nr
Match: gi|1009169261|ref|XP_015903095.1| (PREDICTED: ribosome maturation protein SBDS [Ziziphus jujuba])

HSP 1 Score: 509.2 bits (1310), Expect = 5.8e-141
Identity = 251/358 (70.11%), Postives = 299/358 (83.52%), Query Frame = 1


Query: 4   SLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVS 63
           S VQPIGQKRLTNVAVVRLKKHG RFEIACYKNKVLSWRSGVEKD+DEVLQS  VYSNVS
Sbjct: 14  SKVQPIGQKRLTNVAVVRLKKHGNRFEIACYKNKVLSWRSGVEKDIDEVLQSHTVYSNVS 73

Query: 64  KGVLAKTKDLKVAFGTDDQMEICLKILKEGELQIAGKEREAQLSNQFRDIATIVMQKTFN 123
           KGVLAK+KDL  AFGTDDQ +ICL+IL++GELQIAGKERE+QLS+QFRDIATIVMQKT+N
Sbjct: 74  KGVLAKSKDLIDAFGTDDQTKICLEILEKGELQIAGKERESQLSSQFRDIATIVMQKTYN 133

Query: 124 PETKRPYTISMIERLLREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYVVPEQ 183
           PET+RPYTISMIERL+REIHFAV+PN SSKKQALEV+HELQK FPIKRSPMR+R  VP++
Sbjct: 134 PETQRPYTISMIERLMREIHFAVEPNRSSKKQALEVVHELQKHFPIKRSPMRLRLTVPKE 193

Query: 184 NSPSLLDKLNAWSASIISNDQSGNQQRSIICELDPSFYRDCNPLMSELQGRFEVLSFCLH 243
              SL +KLN+W+A+I+S DQSG+Q   +ICELDP FYR+C  LMS LQGRFEVL+  +H
Sbjct: 194 ELSSLKEKLNSWNANIVSEDQSGSQP-FVICELDPGFYRNCEALMSNLQGRFEVLALSVH 253

Query: 244 EEGDTNVDQYDDDYENMELPPRQVKEPESAIPQLSEALQKQTISVNGENAPKEGK--RCS 303
            EGD  VD+YDD  +    PP   KE    + +LSE +Q+Q+IS    N+  +GK  +CS
Sbjct: 254 AEGDAQVDRYDDHEDE---PPPLPKETTDTVAKLSEKMQQQSISTTSANSAGDGKQSKCS 313

Query: 304 TCNIVVGDATQFREHHKSEWHKHNVKRKTKNLPPLTEEECTVELAMGESESDLKEYSF 360
           TCN  +GD+ QFR+H KSEWHKHN++RKT+ LPPLTEEEC  ++ +G+S++DLKEYSF
Sbjct: 314 TCNAFIGDSKQFRDHFKSEWHKHNLRRKTRQLPPLTEEECMADMELGDSKADLKEYSF 367

[Close]

BLAST of ClCG08G002740 vs. NCBI nr
Match: gi|703129116|ref|XP_010104287.1| (Ribosome maturation protein SBDS [Morus notabilis])

HSP 1 Score: 506.1 bits (1302), Expect = 4.9e-140
Identity = 259/362 (71.55%), Postives = 300/362 (82.87%), Query Frame = 1


Query: 1   MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYS 60
           MSR LVQP+GQKRLTNVAVVRLKK G+RFEIACYKNKVLSWRSGVEKDLDEVLQSQ VYS
Sbjct: 1   MSRILVQPVGQKRLTNVAVVRLKKLGMRFEIACYKNKVLSWRSGVEKDLDEVLQSQTVYS 60

Query: 61  NVSKGVLAKTKDLKVAFGTDDQMEICLKILKEGELQIAGKEREAQLSNQFRDIATIVMQK 120
           NVSKG+LAK+KDL  AFGTDDQ +ICL+IL +GELQIAGKERE+QLS+QFRDIATIVMQK
Sbjct: 61  NVSKGILAKSKDLIAAFGTDDQAKICLEILDKGELQIAGKERESQLSSQFRDIATIVMQK 120

Query: 121 TFNPETKRPYTISMIERLLREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYVV 180
           T+NPET+RPYTI+MIERL+REIHFAVDP   SKKQALEVIHELQK FPIKRSPMR+R  V
Sbjct: 121 TYNPETQRPYTINMIERLMREIHFAVDPISGSKKQALEVIHELQKHFPIKRSPMRLRLSV 180

Query: 181 PEQNSPSLLDKLNAWSASIISNDQSGNQQRSIICELDPSFYRDCNPLMSELQGRFEVLSF 240
           PEQ+S SL++KLNAWSA I S DQSG+ Q  IICELDP  YR+C  LM  LQGRFEVL+ 
Sbjct: 181 PEQSSSSLMEKLNAWSAKIASKDQSGS-QLYIICELDPGIYRECEALMINLQGRFEVLAL 240

Query: 241 CLHEEGDTNVDQYDDDYENMELPPRQVKEPESAIPQLSEALQKQTISVNGENAPK-EGK- 300
            +H  GDT+VDQY DD+E    P    K+   ++ +LS+ LQKQ+IS +       EGK 
Sbjct: 241 SVHAGGDTHVDQY-DDHEGQ--PSHVPKDATDSVAKLSDKLQKQSISSSSATTTAGEGKQ 300

Query: 301 -RCSTCNIVVGDATQFREHHKSEWHKHNVKRKTKNLPPLTEEECTVELAMGESESDLKEY 360
            +C TCN  VGD+ QFREH KSEWHKHN++RKT+NLPPLTEEEC  ++ +G+S++DLKEY
Sbjct: 301 SKCGTCNAFVGDSKQFREHFKSEWHKHNLRRKTRNLPPLTEEECMTDMEIGDSKADLKEY 358

[Close]

BLAST of ClCG08G002740 vs. NCBI nr
Match: gi|672170251|ref|XP_008805180.1| (PREDICTED: ribosome maturation protein SBDS [Phoenix dactylifera])

HSP 1 Score: 501.9 bits (1291), Expect = 9.2e-139
Identity = 250/362 (69.06%), Postives = 303/362 (83.70%), Query Frame = 1


Query: 1   MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYS 60
           MS+SLVQPIGQKRLTNVA+VRLKKHG+RFEIACYKNKVLSWRSGVEKDLDEVLQSQIVY+
Sbjct: 1   MSKSLVQPIGQKRLTNVAIVRLKKHGIRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYA 60

Query: 61  NVSKGVLAKTKDLKVAFGTDDQMEICLKILKEGELQIAGKEREAQLSNQFRDIATIVMQK 120
           NVSKG+LAK+KDL  AFGTDDQ +ICL+IL++GELQ+AGKERE+QLS QFRDIATIVMQK
Sbjct: 61  NVSKGILAKSKDLIAAFGTDDQSKICLEILEKGELQVAGKERESQLSIQFRDIATIVMQK 120

Query: 121 TFNPETKRPYTISMIERLLREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYVV 180
           T NPET+RPYTISMIER++ EIHFAVDP+ SSKKQALEVI EL+K FPIKRSPMR+R +V
Sbjct: 121 TINPETQRPYTISMIERIMHEIHFAVDPHTSSKKQALEVIRELEKHFPIKRSPMRLRLIV 180

Query: 181 PEQNSPSLLDKLNAWSASIISNDQSGNQQRSIICELDPSFYRDCNPLMSELQGRFEVLSF 240
           PE+N   L+DKLN W+ASI+S D+SGN Q S++CE++P  +RDC+ L+  LQGR E+L+ 
Sbjct: 181 PEKNFSVLMDKLNGWNASIVSKDESGN-QLSVVCEIEPGLFRDCDALVRNLQGRLEILAV 240

Query: 241 CLHEEGDTNVDQYDDDYENMELPPRQVKEPESAIPQLSEALQKQTISV---NGENAPKEG 300
            +H EGD++VDQYDD     +LP +  KE    + Q++E LQKQ IS    +GE   K+ 
Sbjct: 241 SVHVEGDSHVDQYDD---TEDLPSKSTKESVFMV-QINERLQKQKISAETRSGEEQVKQ- 300

Query: 301 KRCSTCNIVVGDATQFREHHKSEWHKHNVKRKTKNLPPLTEEECTVELAMGESESDLKEY 360
            RCSTC+ VVGDA Q+REH KSEWHKHN+KRKT+ LPPLT EEC  ++ +G+ ++DLKEY
Sbjct: 301 NRCSTCDAVVGDAKQYREHFKSEWHKHNLKRKTRQLPPLTAEECLADMEVGDLKADLKEY 356

The following BLAST results are available for this feature:

BLAST of ClCG08G002740 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SBDS_MOUSE	2.7e-66	54.66	Ribosome maturation protein SBDS OS=Mus musculus GN=Sbds PE=1 SV=4	[more]
SBDS_RAT	6.1e-66	53.85	Ribosome maturation protein SBDS OS=Rattus norvegicus GN=Sbds PE=2 SV=1	[more]
SBDS_BOVIN	1.0e-65	53.85	Ribosome maturation protein SBDS OS=Bos taurus GN=SBDS PE=2 SV=1	[more]
SBDS_HUMAN	2.0e-64	53.04	Ribosome maturation protein SBDS OS=Homo sapiens GN=SBDS PE=1 SV=4	[more]
SBDS_PONAB	2.0e-64	53.04	Ribosome maturation protein SBDS OS=Pongo abelii GN=SBDS PE=2 SV=1	[more]

BLAST of ClCG08G002740 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KIY6_CUCSA	1.7e-192	91.92	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G397690 PE=4 SV=1	[more]
W9RW90_9ROSA	3.4e-140	71.55	Ribosome maturation protein SBDS OS=Morus notabilis GN=L484_005390 PE=4 SV=1	[more]
A0A0D2RB94_GOSRA	1.0e-136	66.94	Uncharacterized protein OS=Gossypium raimondii GN=B456_005G083500 PE=4 SV=1	[more]
V4V6B7_9ROSI	6.7e-136	67.77	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10001639mg PE=4 SV=1	[more]
A0A061FPW2_THECC	8.7e-136	67.75	Sequence-specific DNA binding transcription factors OS=Theobroma cacao GN=TCM_03...	[more]

BLAST of ClCG08G002740 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G43860.1	6.4e-130	61.02	sequence-specific DNA binding transcription factors	[more]

BLAST of ClCG08G002740 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659133353\|ref\|XP_008466694.1\|	5.3e-195	93.87	PREDICTED: ribosome maturation protein SBDS [Cucumis melo]	[more]
gi\|449458091\|ref\|XP_004146781.1\|	2.5e-192	91.92	PREDICTED: ribosome maturation protein SBDS [Cucumis sativus]	[more]
gi\|1009169261\|ref\|XP_015903095.1\|	5.8e-141	70.11	PREDICTED: ribosome maturation protein SBDS [Ziziphus jujuba]	[more]
gi\|703129116\|ref\|XP_010104287.1\|	4.9e-140	71.55	Ribosome maturation protein SBDS [Morus notabilis]	[more]
gi\|672170251\|ref\|XP_008805180.1\|	9.2e-139	69.06	PREDICTED: ribosome maturation protein SBDS [Phoenix dactylifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002140	Sdo1/SBDS
IPR003604	Matrin/U1-like-C_Znf_C2H2
IPR007087	Zinc finger, C2H2
IPR018023	Ribosome_mat_SBDS_CS
IPR018978	Ribosome_mat_SBDS_C
IPR019783	Ribosome_mat_SBDS_N

Vocabulary: **Biological Process**
Term	Definition
GO:0042256	mature ribosome assembly
GO:0042254	ribosome biogenesis

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0008270	zinc ion binding
GO:0046872	metal ion binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042256	mature ribosome assembly
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005667	transcription factor complex
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG08G002740.1	ClCG08G002740.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002140	Ribosome maturation protein Sdo1/SBDS	PANTHER	PTHR10927:SF1	RIBOSOME MATURATION PROTEIN SBDS	coord: 1..349 score: 7.6E
IPR002140	Ribosome maturation protein Sdo1/SBDS	TIGRFAMs	TIGR00291	TIGR00291	coord: 13..231 score: 3.8
IPR003604	Zinc finger, U1-type	SMART	SM00451	ZnF_U1_5	coord: 295..329 score: 0.
IPR007087	Zinc finger, C2H2	PROSITE	PS00028	ZINC_FINGER_C2H2_1	coord: 300..322 scor
IPR018023	Ribosome maturation protein SBDS, conserved site	PROSITE	PS01267	UPF0023	coord: 46..65 scor
IPR018978	Ribosome maturation protein SBDS, C-terminal	PFAM	PF09377	SBDS_C	coord: 110..225 score: 1.1
IPR019783	Ribosome maturation protein SBDS, N-terminal	GENE3D	G3DSA:3.30.1250.10		coord: 17..96 score: 5.5
IPR019783	Ribosome maturation protein SBDS, N-terminal	PFAM	PF01172	SBDS	coord: 16..102 score: 3.0
IPR019783	Ribosome maturation protein SBDS, N-terminal	unknown	SSF89895	FYSH domain	coord: 13..96 score: 8.63
None	No IPR available	PANTHER	PTHR10927	RIBOSOME MATURATION PROTEIN SBDS	coord: 1..349 score: 7.6E
None	No IPR available	unknown	SSF109728	Hypothetical protein AF0491, middle domain	coord: 98..171 score: 5.75
None	No IPR available	unknown	SSF57667	beta-beta-alpha zinc fingers	coord: 288..329 score: 1.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG08G002740	Cla003805	Watermelon (97103) v1	wcgwmB403
ClCG08G002740	Cla97C08G146650	Watermelon (97103) v2	wcgwmbB336
ClCG08G002740	Bhi04G001706	Wax gourd	wcgwgoB617
ClCG08G002740	CmoCh09G010770	Cucurbita moschata (Rifu)	cmowcgB032
ClCG08G002740	Lsi08G002740	Bottle gourd (USVL1VR-Ls)	lsiwcgB445

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG08G002740	Bottle gourd (USVL1VR-Ls)	lsiwcgB440
ClCG08G002740	Cucumber (Gy14) v2	cgybwcgB457
ClCG08G002740	Cucumber (Chinese Long) v3	cucwcgB518
ClCG08G002740	Wax gourd	wcgwgoB633
ClCG08G002740	Cucumber (Gy14) v1	cgywcgB627
ClCG08G002740	Wild cucumber (PI 183967)	cpiwcgB526
ClCG08G002740	Cucumber (Chinese Long) v2	cuwcgB500
ClCG08G002740	Watermelon (97103) v1	wcgwmB410