ClCG08G002370.1 (mRNA) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG08G002370.1
Type	mRNA
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Ribosomal protein S12
Location	CG_Chr08 : 5007668 .. 5007967 (+)
Sequence length	300

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAGGCAACAACAGGCAAAAGAAAGCTCACTCATCTTTTTCAATCTTTAGCTTTTTCAAATCTAGAAGGGGTCGAAAAGGAGACCATTGCGACCACGGTGGGTCTTGGCTAGACGAGATGCCGAGATCGAGCAAGGTGTGGCCGAGCGATGAGGACAAACCTCATCATTGGGTTGCTGAACCTGGTATTGATAGAAAGGCCAAAGATTACATTGATAGGATCTATCGAAACCGTGTTTTTGAATCTGAGCGCCAAACTGTTACCGTACCTCCCAATGGAACAAAACCCAATGTGTAG

mRNA sequence

ATGGGAGGCAACAACAGGCAAAAGAAAGCTCACTCATCTTTTTCAATCTTTAGCTTTTTCAAATCTAGAAGGGGTCGAAAAGGAGACCATTGCGACCACGGTGGGTCTTGGCTAGACGAGATGCCGAGATCGAGCAAGGTGTGGCCGAGCGATGAGGACAAACCTCATCATTGGGTTGCTGAACCTGGTATTGATAGAAAGGCCAAAGATTACATTGATAGGATCTATCGAAACCGTGTTTTTGAATCTGAGCGCCAAACTGTTACCGTACCTCCCAATGGAACAAAACCCAATGTGTAG

Coding sequence (CDS)

ATGGGAGGCAACAACAGGCAAAAGAAAGCTCACTCATCTTTTTCAATCTTTAGCTTTTTCAAATCTAGAAGGGGTCGAAAAGGAGACCATTGCGACCACGGTGGGTCTTGGCTAGACGAGATGCCGAGATCGAGCAAGGTGTGGCCGAGCGATGAGGACAAACCTCATCATTGGGTTGCTGAACCTGGTATTGATAGAAAGGCCAAAGATTACATTGATAGGATCTATCGAAACCGTGTTTTTGAATCTGAGCGCCAAACTGTTACCGTACCTCCCAATGGAACAAAACCCAATGTGTAG

Protein sequence

MGGNNRQKKAHSSFSIFSFFKSRRGRKGDHCDHGGSWLDEMPRSSKVWPSDEDKPHHWVAEPGIDRKAKDYIDRIYRNRVFESERQTVTVPPNGTKPNV

Homology

[Close]

BLAST of ClCG08G002370.1 vs. TrEMBL
Match: A0A0A0KAK6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014890 PE=4 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 1.4e-46
Identity = 89/99 (89.90%), Postives = 92/99 (92.93%), Query Frame = 1


Query: 1   MGGNNRQKKAHSSFSIFSFFKSRRGRKGDHCDHGGSWLDEMPRSSKVWPSDEDKPHHWVA 60
           MGGNNRQKKAH+SFSIFSFFKSRRGRKGDHC+H GS LDEMPRS KVWPSDEDK HHWVA
Sbjct: 1   MGGNNRQKKAHASFSIFSFFKSRRGRKGDHCNHSGSCLDEMPRSGKVWPSDEDKAHHWVA 60

Query: 61  EPGIDRKAKDYIDRIYRNRVFESERQTVTVPPNGTKPNV 100
           EPGIDRKAKDYIDRIYRNRVFESERQTVT+ PNG K NV
Sbjct: 61  EPGIDRKAKDYIDRIYRNRVFESERQTVTISPNGIKSNV 99

[Close]

BLAST of ClCG08G002370.1 vs. TrEMBL
Match: A0A0A0KBW1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014870 PE=4 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 1.4e-46
Identity = 88/97 (90.72%), Postives = 92/97 (94.85%), Query Frame = 1


Query: 3   GNNRQKKAHSSFSIFSFFKSRRGRKGDHCDHGGSWLDEMPRSSKVWPSDEDKPHHWVAEP 62
           G NRQKK+HSSFSIFSFFKSRRGRKGDH DHGG+WLDEMPRS+KVWPSDEDK HHWVAEP
Sbjct: 2   GGNRQKKSHSSFSIFSFFKSRRGRKGDHYDHGGAWLDEMPRSNKVWPSDEDKAHHWVAEP 61

Query: 63  GIDRKAKDYIDRIYRNRVFESERQTVTVPPNGTKPNV 100
           GIDRKAKDYIDRIYRNRVFESERQTVT+ PNGTK NV
Sbjct: 62  GIDRKAKDYIDRIYRNRVFESERQTVTISPNGTKSNV 98

[Close]

BLAST of ClCG08G002370.1 vs. TrEMBL
Match: A0A0A0K7Y2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014900 PE=4 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 2.5e-45
Identity = 85/97 (87.63%), Postives = 91/97 (93.81%), Query Frame = 1


Query: 3   GNNRQKKAHSSFSIFSFFKSRRGRKGDHCDHGGSWLDEMPRSSKVWPSDEDKPHHWVAEP 62
           G NRQKK+HSSFSIFSFFKS+RGRKGDH DHGG+W DEMPRS+KVWPSDEDK HHW+AEP
Sbjct: 2   GGNRQKKSHSSFSIFSFFKSKRGRKGDHYDHGGAWPDEMPRSNKVWPSDEDKAHHWIAEP 61

Query: 63  GIDRKAKDYIDRIYRNRVFESERQTVTVPPNGTKPNV 100
           GIDRKAKDYIDRIYRNRVFESERQTVT+ PNGTK NV
Sbjct: 62  GIDRKAKDYIDRIYRNRVFESERQTVTISPNGTKSNV 98

[Close]

BLAST of ClCG08G002370.1 vs. TrEMBL
Match: A0A0A0K8V3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014880 PE=4 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 1.1e-37
Identity = 74/91 (81.32%), Postives = 79/91 (86.81%), Query Frame = 1


Query: 3  GNNRQKKAHSSFSIFSFFKSRRGRKGDHCDHGGSWLDEMPRSSKVWPSDEDKPHHWVAEP 62
          G ++ KK+HSSFS FSF KS+  RKGDH DHGGSWLDE  RS KVWPSDEDK HHWVAEP
Sbjct: 2  GGHKHKKSHSSFSFFSFLKSKWSRKGDHYDHGGSWLDEKSRSGKVWPSDEDKAHHWVAEP 61

Query: 63 GIDRKAKDYIDRIYRNRVFESERQTVTVPPN 94
          GIDRKAKDYIDRIYRNRVFESERQTVT+P N
Sbjct: 62 GIDRKAKDYIDRIYRNRVFESERQTVTIPTN 92

[Close]

BLAST of ClCG08G002370.1 vs. TrEMBL
Match: A0A0A0K8W0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G016905 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 5.7e-37
Identity = 75/99 (75.76%), Postives = 87/99 (87.88%), Query Frame = 1


Query: 1   MGGNNRQKKAHSSFSIFSFFKSRRGRKGDHCDHGGSWLDEMPRSSKVWPSDEDKPHHWVA 60
           MGG++RQKK HSSFSIFSFFKS+RGRKGD  +HG +W +++P SSKVWPSDEDK + WVA
Sbjct: 1   MGGSHRQKKTHSSFSIFSFFKSKRGRKGDVYEHGTNW-EDVPSSSKVWPSDEDKGYRWVA 60

Query: 61  EPGIDRKAKDYIDRIYRNRVFESERQTVTVPPNGTKPNV 100
           EPGIDRKAKDYIDRIY+NRVFE+ERQTVT+ PNG   NV
Sbjct: 61  EPGIDRKAKDYIDRIYKNRVFETERQTVTIHPNGPNSNV 98

[Close]

BLAST of ClCG08G002370.1 vs. TAIR10
Match: AT3G05858.1 (AT3G05858.1 unknown protein)

HSP 1 Score: 78.2 bits (191), Expect = 3.2e-15
Identity = 47/91 (51.65%), Postives = 58/91 (63.74%), Query Frame = 1


Query: 1  MGGNNRQKKAHSS--FSIFSFFKSRRGRKGDHCDHGGSWLDEMPRSSKVWPSDEDKPHHW 60
          MGG NR   +HSS  FS+FSFFK+RR  +    +  GSW D+   + K   SDEDK  +W
Sbjct: 1  MGGKNR---SHSSKRFSLFSFFKTRRSHR---VEADGSW-DDFGYTRKAMASDEDK-RYW 60

Query: 61 VAEPGIDRKAKDYIDRIYRNRVFESERQTVT 90
          VAEPGIDRKA  +I + +  RV ESERQT++
Sbjct: 61 VAEPGIDRKASAFIAKFHATRVSESERQTLS 83

[Close]

BLAST of ClCG08G002370.1 vs. TAIR10
Match: AT5G26620.1 (AT5G26620.1 unknown protein)

HSP 1 Score: 60.1 bits (144), Expect = 9.0e-10
Identity = 32/57 (56.14%), Postives = 39/57 (68.42%), Query Frame = 1


Query: 36 SWLDEMPRSSKVWPSDEDKPHHWVAEPGIDRKAKDYIDRIYRNRVFESERQTVTVPP 93
          SW D++  + K W SDEDK  +WVAEPGIDRKA  +I + + +RV ESERQ  T+PP
Sbjct: 16 SW-DDVIYTRKAWASDEDK-RYWVAEPGIDRKASAFIAKFHASRVSESERQ--TLPP 68

[Close]

BLAST of ClCG08G002370.1 vs. NCBI nr
Match: gi|700190665|gb|KGN45869.1| (hypothetical protein Csa_6G014890 [Cucumis sativus])

HSP 1 Score: 193.4 bits (490), Expect = 1.9e-46
Identity = 89/99 (89.90%), Postives = 92/99 (92.93%), Query Frame = 1


Query: 1   MGGNNRQKKAHSSFSIFSFFKSRRGRKGDHCDHGGSWLDEMPRSSKVWPSDEDKPHHWVA 60
           MGGNNRQKKAH+SFSIFSFFKSRRGRKGDHC+H GS LDEMPRS KVWPSDEDK HHWVA
Sbjct: 1   MGGNNRQKKAHASFSIFSFFKSRRGRKGDHCNHSGSCLDEMPRSGKVWPSDEDKAHHWVA 60

Query: 61  EPGIDRKAKDYIDRIYRNRVFESERQTVTVPPNGTKPNV 100
           EPGIDRKAKDYIDRIYRNRVFESERQTVT+ PNG K NV
Sbjct: 61  EPGIDRKAKDYIDRIYRNRVFESERQTVTISPNGIKSNV 99

[Close]

BLAST of ClCG08G002370.1 vs. NCBI nr
Match: gi|700190663|gb|KGN45867.1| (hypothetical protein Csa_6G014870 [Cucumis sativus])

HSP 1 Score: 193.4 bits (490), Expect = 1.9e-46
Identity = 88/97 (90.72%), Postives = 92/97 (94.85%), Query Frame = 1


Query: 3   GNNRQKKAHSSFSIFSFFKSRRGRKGDHCDHGGSWLDEMPRSSKVWPSDEDKPHHWVAEP 62
           G NRQKK+HSSFSIFSFFKSRRGRKGDH DHGG+WLDEMPRS+KVWPSDEDK HHWVAEP
Sbjct: 2   GGNRQKKSHSSFSIFSFFKSRRGRKGDHYDHGGAWLDEMPRSNKVWPSDEDKAHHWVAEP 61

Query: 63  GIDRKAKDYIDRIYRNRVFESERQTVTVPPNGTKPNV 100
           GIDRKAKDYIDRIYRNRVFESERQTVT+ PNGTK NV
Sbjct: 62  GIDRKAKDYIDRIYRNRVFESERQTVTISPNGTKSNV 98

[Close]

BLAST of ClCG08G002370.1 vs. NCBI nr
Match: gi|700190666|gb|KGN45870.1| (hypothetical protein Csa_6G014900 [Cucumis sativus])

HSP 1 Score: 189.1 bits (479), Expect = 3.7e-45
Identity = 85/97 (87.63%), Postives = 91/97 (93.81%), Query Frame = 1


Query: 3   GNNRQKKAHSSFSIFSFFKSRRGRKGDHCDHGGSWLDEMPRSSKVWPSDEDKPHHWVAEP 62
           G NRQKK+HSSFSIFSFFKS+RGRKGDH DHGG+W DEMPRS+KVWPSDEDK HHW+AEP
Sbjct: 2   GGNRQKKSHSSFSIFSFFKSKRGRKGDHYDHGGAWPDEMPRSNKVWPSDEDKAHHWIAEP 61

Query: 63  GIDRKAKDYIDRIYRNRVFESERQTVTVPPNGTKPNV 100
           GIDRKAKDYIDRIYRNRVFESERQTVT+ PNGTK NV
Sbjct: 62  GIDRKAKDYIDRIYRNRVFESERQTVTISPNGTKSNV 98

[Close]

BLAST of ClCG08G002370.1 vs. NCBI nr
Match: gi|700190664|gb|KGN45868.1| (hypothetical protein Csa_6G014880 [Cucumis sativus])

HSP 1 Score: 163.7 bits (413), Expect = 1.6e-37
Identity = 74/91 (81.32%), Postives = 79/91 (86.81%), Query Frame = 1


Query: 3  GNNRQKKAHSSFSIFSFFKSRRGRKGDHCDHGGSWLDEMPRSSKVWPSDEDKPHHWVAEP 62
          G ++ KK+HSSFS FSF KS+  RKGDH DHGGSWLDE  RS KVWPSDEDK HHWVAEP
Sbjct: 2  GGHKHKKSHSSFSFFSFLKSKWSRKGDHYDHGGSWLDEKSRSGKVWPSDEDKAHHWVAEP 61

Query: 63 GIDRKAKDYIDRIYRNRVFESERQTVTVPPN 94
          GIDRKAKDYIDRIYRNRVFESERQTVT+P N
Sbjct: 62 GIDRKAKDYIDRIYRNRVFESERQTVTIPTN 92

[Close]

BLAST of ClCG08G002370.1 vs. NCBI nr
Match: gi|700190669|gb|KGN45873.1| (hypothetical protein Csa_6G016905 [Cucumis sativus])

HSP 1 Score: 161.4 bits (407), Expect = 8.2e-37
Identity = 75/99 (75.76%), Postives = 87/99 (87.88%), Query Frame = 1


Query: 1   MGGNNRQKKAHSSFSIFSFFKSRRGRKGDHCDHGGSWLDEMPRSSKVWPSDEDKPHHWVA 60
           MGG++RQKK HSSFSIFSFFKS+RGRKGD  +HG +W +++P SSKVWPSDEDK + WVA
Sbjct: 1   MGGSHRQKKTHSSFSIFSFFKSKRGRKGDVYEHGTNW-EDVPSSSKVWPSDEDKGYRWVA 60

Query: 61  EPGIDRKAKDYIDRIYRNRVFESERQTVTVPPNGTKPNV 100
           EPGIDRKAKDYIDRIY+NRVFE+ERQTVT+ PNG   NV
Sbjct: 61  EPGIDRKAKDYIDRIYKNRVFETERQTVTIHPNGPNSNV 98

The following BLAST results are available for this feature:

BLAST of ClCG08G002370.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KAK6_CUCSA	1.4e-46	89.90	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014890 PE=4 SV=1	[more]
A0A0A0KBW1_CUCSA	1.4e-46	90.72	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014870 PE=4 SV=1	[more]
A0A0A0K7Y2_CUCSA	2.5e-45	87.63	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014900 PE=4 SV=1	[more]
A0A0A0K8V3_CUCSA	1.1e-37	81.32	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014880 PE=4 SV=1	[more]
A0A0A0K8W0_CUCSA	5.7e-37	75.76	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G016905 PE=4 SV=1	[more]

BLAST of ClCG08G002370.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G05858.1	3.2e-15	51.65	unknown protein	[more]
AT5G26620.1	9.0e-10	56.14	unknown protein	[more]

BLAST of ClCG08G002370.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700190665\|gb\|KGN45869.1\|	1.9e-46	89.90	hypothetical protein Csa_6G014890 [Cucumis sativus]	[more]
gi\|700190663\|gb\|KGN45867.1\|	1.9e-46	90.72	hypothetical protein Csa_6G014870 [Cucumis sativus]	[more]
gi\|700190666\|gb\|KGN45870.1\|	3.7e-45	87.63	hypothetical protein Csa_6G014900 [Cucumis sativus]	[more]
gi\|700190664\|gb\|KGN45868.1\|	1.6e-37	81.32	hypothetical protein Csa_6G014880 [Cucumis sativus]	[more]
gi\|700190669\|gb\|KGN45873.1\|	8.2e-37	75.76	hypothetical protein Csa_6G016905 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
ClCG08G002370	ClCG08G002370	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
ClCG08G002370.1	ClCG08G002370.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG08G002370.1.cds1	ClCG08G002370.1.cds1	CDS

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33511	FAMILY NOT NAMED	coord: 2..88 score: 4.7