ClCG08G002370 (gene) Watermelon (Charleston Gray)

Overview
NameClCG08G002370
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionRibosomal protein S12
LocationCG_Chr08 : 5007668 .. 5007967 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAGGCAACAACAGGCAAAAGAAAGCTCACTCATCTTTTTCAATCTTTAGCTTTTTCAAATCTAGAAGGGGTCGAAAAGGAGACCATTGCGACCACGGTGGGTCTTGGCTAGACGAGATGCCGAGATCGAGCAAGGTGTGGCCGAGCGATGAGGACAAACCTCATCATTGGGTTGCTGAACCTGGTATTGATAGAAAGGCCAAAGATTACATTGATAGGATCTATCGAAACCGTGTTTTTGAATCTGAGCGCCAAACTGTTACCGTACCTCCCAATGGAACAAAACCCAATGTGTAG

mRNA sequence

ATGGGAGGCAACAACAGGCAAAAGAAAGCTCACTCATCTTTTTCAATCTTTAGCTTTTTCAAATCTAGAAGGGGTCGAAAAGGAGACCATTGCGACCACGGTGGGTCTTGGCTAGACGAGATGCCGAGATCGAGCAAGGTGTGGCCGAGCGATGAGGACAAACCTCATCATTGGGTTGCTGAACCTGGTATTGATAGAAAGGCCAAAGATTACATTGATAGGATCTATCGAAACCGTGTTTTTGAATCTGAGCGCCAAACTGTTACCGTACCTCCCAATGGAACAAAACCCAATGTGTAG

Coding sequence (CDS)

ATGGGAGGCAACAACAGGCAAAAGAAAGCTCACTCATCTTTTTCAATCTTTAGCTTTTTCAAATCTAGAAGGGGTCGAAAAGGAGACCATTGCGACCACGGTGGGTCTTGGCTAGACGAGATGCCGAGATCGAGCAAGGTGTGGCCGAGCGATGAGGACAAACCTCATCATTGGGTTGCTGAACCTGGTATTGATAGAAAGGCCAAAGATTACATTGATAGGATCTATCGAAACCGTGTTTTTGAATCTGAGCGCCAAACTGTTACCGTACCTCCCAATGGAACAAAACCCAATGTGTAG

Protein sequence

MGGNNRQKKAHSSFSIFSFFKSRRGRKGDHCDHGGSWLDEMPRSSKVWPSDEDKPHHWVAEPGIDRKAKDYIDRIYRNRVFESERQTVTVPPNGTKPNV
Homology
[Close]
BLAST of ClCG08G002370 vs. TrEMBL
Match: A0A0A0KAK6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014890 PE=4 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 1.4e-46
Identity = 89/99 (89.90%), Postives = 92/99 (92.93%), Query Frame = 1 

Query: 1   MGGNNRQKKAHSSFSIFSFFKSRRGRKGDHCDHGGSWLDEMPRSSKVWPSDEDKPHHWVA 60
           MGGNNRQKKAH+SFSIFSFFKSRRGRKGDHC+H GS LDEMPRS KVWPSDEDK HHWVA
Sbjct: 1   MGGNNRQKKAHASFSIFSFFKSRRGRKGDHCNHSGSCLDEMPRSGKVWPSDEDKAHHWVA 60

Query: 61  EPGIDRKAKDYIDRIYRNRVFESERQTVTVPPNGTKPNV 100
           EPGIDRKAKDYIDRIYRNRVFESERQTVT+ PNG K NV
Sbjct: 61  EPGIDRKAKDYIDRIYRNRVFESERQTVTISPNGIKSNV 99

[Close]
BLAST of ClCG08G002370 vs. TrEMBL
Match: A0A0A0KBW1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014870 PE=4 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 1.4e-46
Identity = 88/97 (90.72%), Postives = 92/97 (94.85%), Query Frame = 1 

Query: 3   GNNRQKKAHSSFSIFSFFKSRRGRKGDHCDHGGSWLDEMPRSSKVWPSDEDKPHHWVAEP 62
           G NRQKK+HSSFSIFSFFKSRRGRKGDH DHGG+WLDEMPRS+KVWPSDEDK HHWVAEP
Sbjct: 2   GGNRQKKSHSSFSIFSFFKSRRGRKGDHYDHGGAWLDEMPRSNKVWPSDEDKAHHWVAEP 61

Query: 63  GIDRKAKDYIDRIYRNRVFESERQTVTVPPNGTKPNV 100
           GIDRKAKDYIDRIYRNRVFESERQTVT+ PNGTK NV
Sbjct: 62  GIDRKAKDYIDRIYRNRVFESERQTVTISPNGTKSNV 98

[Close]
BLAST of ClCG08G002370 vs. TrEMBL
Match: A0A0A0K7Y2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014900 PE=4 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 2.5e-45
Identity = 85/97 (87.63%), Postives = 91/97 (93.81%), Query Frame = 1 

Query: 3   GNNRQKKAHSSFSIFSFFKSRRGRKGDHCDHGGSWLDEMPRSSKVWPSDEDKPHHWVAEP 62
           G NRQKK+HSSFSIFSFFKS+RGRKGDH DHGG+W DEMPRS+KVWPSDEDK HHW+AEP
Sbjct: 2   GGNRQKKSHSSFSIFSFFKSKRGRKGDHYDHGGAWPDEMPRSNKVWPSDEDKAHHWIAEP 61

Query: 63  GIDRKAKDYIDRIYRNRVFESERQTVTVPPNGTKPNV 100
           GIDRKAKDYIDRIYRNRVFESERQTVT+ PNGTK NV
Sbjct: 62  GIDRKAKDYIDRIYRNRVFESERQTVTISPNGTKSNV 98

[Close]
BLAST of ClCG08G002370 vs. TrEMBL
Match: A0A0A0K8V3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014880 PE=4 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 1.1e-37
Identity = 74/91 (81.32%), Postives = 79/91 (86.81%), Query Frame = 1 

Query: 3  GNNRQKKAHSSFSIFSFFKSRRGRKGDHCDHGGSWLDEMPRSSKVWPSDEDKPHHWVAEP 62
          G ++ KK+HSSFS FSF KS+  RKGDH DHGGSWLDE  RS KVWPSDEDK HHWVAEP
Sbjct: 2  GGHKHKKSHSSFSFFSFLKSKWSRKGDHYDHGGSWLDEKSRSGKVWPSDEDKAHHWVAEP 61

Query: 63 GIDRKAKDYIDRIYRNRVFESERQTVTVPPN 94
          GIDRKAKDYIDRIYRNRVFESERQTVT+P N
Sbjct: 62 GIDRKAKDYIDRIYRNRVFESERQTVTIPTN 92

[Close]
BLAST of ClCG08G002370 vs. TrEMBL
Match: A0A0A0K8W0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G016905 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 5.7e-37
Identity = 75/99 (75.76%), Postives = 87/99 (87.88%), Query Frame = 1 

Query: 1   MGGNNRQKKAHSSFSIFSFFKSRRGRKGDHCDHGGSWLDEMPRSSKVWPSDEDKPHHWVA 60
           MGG++RQKK HSSFSIFSFFKS+RGRKGD  +HG +W +++P SSKVWPSDEDK + WVA
Sbjct: 1   MGGSHRQKKTHSSFSIFSFFKSKRGRKGDVYEHGTNW-EDVPSSSKVWPSDEDKGYRWVA 60

Query: 61  EPGIDRKAKDYIDRIYRNRVFESERQTVTVPPNGTKPNV 100
           EPGIDRKAKDYIDRIY+NRVFE+ERQTVT+ PNG   NV
Sbjct: 61  EPGIDRKAKDYIDRIYKNRVFETERQTVTIHPNGPNSNV 98

[Close]
BLAST of ClCG08G002370 vs. TAIR10
Match: AT3G05858.1 (AT3G05858.1 unknown protein)

HSP 1 Score: 78.2 bits (191), Expect = 3.2e-15
Identity = 47/91 (51.65%), Postives = 58/91 (63.74%), Query Frame = 1 

Query: 1  MGGNNRQKKAHSS--FSIFSFFKSRRGRKGDHCDHGGSWLDEMPRSSKVWPSDEDKPHHW 60
          MGG NR   +HSS  FS+FSFFK+RR  +    +  GSW D+   + K   SDEDK  +W
Sbjct: 1  MGGKNR---SHSSKRFSLFSFFKTRRSHR---VEADGSW-DDFGYTRKAMASDEDK-RYW 60

Query: 61 VAEPGIDRKAKDYIDRIYRNRVFESERQTVT 90
          VAEPGIDRKA  +I + +  RV ESERQT++
Sbjct: 61 VAEPGIDRKASAFIAKFHATRVSESERQTLS 83

[Close]
BLAST of ClCG08G002370 vs. TAIR10
Match: AT5G26620.1 (AT5G26620.1 unknown protein)

HSP 1 Score: 60.1 bits (144), Expect = 9.0e-10
Identity = 32/57 (56.14%), Postives = 39/57 (68.42%), Query Frame = 1 

Query: 36 SWLDEMPRSSKVWPSDEDKPHHWVAEPGIDRKAKDYIDRIYRNRVFESERQTVTVPP 93
          SW D++  + K W SDEDK  +WVAEPGIDRKA  +I + + +RV ESERQ  T+PP
Sbjct: 16 SW-DDVIYTRKAWASDEDK-RYWVAEPGIDRKASAFIAKFHASRVSESERQ--TLPP 68

[Close]
BLAST of ClCG08G002370 vs. NCBI nr
Match: gi|700190665|gb|KGN45869.1| (hypothetical protein Csa_6G014890 [Cucumis sativus])

HSP 1 Score: 193.4 bits (490), Expect = 1.9e-46
Identity = 89/99 (89.90%), Postives = 92/99 (92.93%), Query Frame = 1 

Query: 1   MGGNNRQKKAHSSFSIFSFFKSRRGRKGDHCDHGGSWLDEMPRSSKVWPSDEDKPHHWVA 60
           MGGNNRQKKAH+SFSIFSFFKSRRGRKGDHC+H GS LDEMPRS KVWPSDEDK HHWVA
Sbjct: 1   MGGNNRQKKAHASFSIFSFFKSRRGRKGDHCNHSGSCLDEMPRSGKVWPSDEDKAHHWVA 60

Query: 61  EPGIDRKAKDYIDRIYRNRVFESERQTVTVPPNGTKPNV 100
           EPGIDRKAKDYIDRIYRNRVFESERQTVT+ PNG K NV
Sbjct: 61  EPGIDRKAKDYIDRIYRNRVFESERQTVTISPNGIKSNV 99

[Close]
BLAST of ClCG08G002370 vs. NCBI nr
Match: gi|700190663|gb|KGN45867.1| (hypothetical protein Csa_6G014870 [Cucumis sativus])

HSP 1 Score: 193.4 bits (490), Expect = 1.9e-46
Identity = 88/97 (90.72%), Postives = 92/97 (94.85%), Query Frame = 1 

Query: 3   GNNRQKKAHSSFSIFSFFKSRRGRKGDHCDHGGSWLDEMPRSSKVWPSDEDKPHHWVAEP 62
           G NRQKK+HSSFSIFSFFKSRRGRKGDH DHGG+WLDEMPRS+KVWPSDEDK HHWVAEP
Sbjct: 2   GGNRQKKSHSSFSIFSFFKSRRGRKGDHYDHGGAWLDEMPRSNKVWPSDEDKAHHWVAEP 61

Query: 63  GIDRKAKDYIDRIYRNRVFESERQTVTVPPNGTKPNV 100
           GIDRKAKDYIDRIYRNRVFESERQTVT+ PNGTK NV
Sbjct: 62  GIDRKAKDYIDRIYRNRVFESERQTVTISPNGTKSNV 98

[Close]
BLAST of ClCG08G002370 vs. NCBI nr
Match: gi|700190666|gb|KGN45870.1| (hypothetical protein Csa_6G014900 [Cucumis sativus])

HSP 1 Score: 189.1 bits (479), Expect = 3.7e-45
Identity = 85/97 (87.63%), Postives = 91/97 (93.81%), Query Frame = 1 

Query: 3   GNNRQKKAHSSFSIFSFFKSRRGRKGDHCDHGGSWLDEMPRSSKVWPSDEDKPHHWVAEP 62
           G NRQKK+HSSFSIFSFFKS+RGRKGDH DHGG+W DEMPRS+KVWPSDEDK HHW+AEP
Sbjct: 2   GGNRQKKSHSSFSIFSFFKSKRGRKGDHYDHGGAWPDEMPRSNKVWPSDEDKAHHWIAEP 61

Query: 63  GIDRKAKDYIDRIYRNRVFESERQTVTVPPNGTKPNV 100
           GIDRKAKDYIDRIYRNRVFESERQTVT+ PNGTK NV
Sbjct: 62  GIDRKAKDYIDRIYRNRVFESERQTVTISPNGTKSNV 98

[Close]
BLAST of ClCG08G002370 vs. NCBI nr
Match: gi|700190664|gb|KGN45868.1| (hypothetical protein Csa_6G014880 [Cucumis sativus])

HSP 1 Score: 163.7 bits (413), Expect = 1.6e-37
Identity = 74/91 (81.32%), Postives = 79/91 (86.81%), Query Frame = 1 

Query: 3  GNNRQKKAHSSFSIFSFFKSRRGRKGDHCDHGGSWLDEMPRSSKVWPSDEDKPHHWVAEP 62
          G ++ KK+HSSFS FSF KS+  RKGDH DHGGSWLDE  RS KVWPSDEDK HHWVAEP
Sbjct: 2  GGHKHKKSHSSFSFFSFLKSKWSRKGDHYDHGGSWLDEKSRSGKVWPSDEDKAHHWVAEP 61

Query: 63 GIDRKAKDYIDRIYRNRVFESERQTVTVPPN 94
          GIDRKAKDYIDRIYRNRVFESERQTVT+P N
Sbjct: 62 GIDRKAKDYIDRIYRNRVFESERQTVTIPTN 92

[Close]
BLAST of ClCG08G002370 vs. NCBI nr
Match: gi|700190669|gb|KGN45873.1| (hypothetical protein Csa_6G016905 [Cucumis sativus])

HSP 1 Score: 161.4 bits (407), Expect = 8.2e-37
Identity = 75/99 (75.76%), Postives = 87/99 (87.88%), Query Frame = 1 

Query: 1   MGGNNRQKKAHSSFSIFSFFKSRRGRKGDHCDHGGSWLDEMPRSSKVWPSDEDKPHHWVA 60
           MGG++RQKK HSSFSIFSFFKS+RGRKGD  +HG +W +++P SSKVWPSDEDK + WVA
Sbjct: 1   MGGSHRQKKTHSSFSIFSFFKSKRGRKGDVYEHGTNW-EDVPSSSKVWPSDEDKGYRWVA 60

Query: 61  EPGIDRKAKDYIDRIYRNRVFESERQTVTVPPNGTKPNV 100
           EPGIDRKAKDYIDRIY+NRVFE+ERQTVT+ PNG   NV
Sbjct: 61  EPGIDRKAKDYIDRIYKNRVFETERQTVTIHPNGPNSNV 98

The following BLAST results are available for this feature:
BLAST of ClCG08G002370 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KAK6_CUCSA1.4e-4689.90Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014890 PE=4 SV=1[more]
A0A0A0KBW1_CUCSA1.4e-4690.72Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014870 PE=4 SV=1[more]
A0A0A0K7Y2_CUCSA2.5e-4587.63Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014900 PE=4 SV=1[more]
A0A0A0K8V3_CUCSA1.1e-3781.32Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014880 PE=4 SV=1[more]
A0A0A0K8W0_CUCSA5.7e-3775.76Uncharacterized protein OS=Cucumis sativus GN=Csa_6G016905 PE=4 SV=1[more]
BLAST of ClCG08G002370 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G05858.13.2e-1551.65 unknown protein[more]
AT5G26620.19.0e-1056.14 unknown protein[more]
BLAST of ClCG08G002370 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700190665|gb|KGN45869.1|1.9e-4689.90hypothetical protein Csa_6G014890 [Cucumis sativus][more]
gi|700190663|gb|KGN45867.1|1.9e-4690.72hypothetical protein Csa_6G014870 [Cucumis sativus][more]
gi|700190666|gb|KGN45870.1|3.7e-4587.63hypothetical protein Csa_6G014900 [Cucumis sativus][more]
gi|700190664|gb|KGN45868.1|1.6e-3781.32hypothetical protein Csa_6G014880 [Cucumis sativus][more]
gi|700190669|gb|KGN45873.1|8.2e-3775.76hypothetical protein Csa_6G016905 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG08G002370.1ClCG08G002370.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33511FAMILY NOT NAMEDcoord: 2..88
score: 4.7

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG08G002370Melon (DHL92) v3.6.1medwcgB297
ClCG08G002370Cucumber (Chinese Long) v3cucwcgB518
ClCG08G002370Watermelon (97103) v2wcgwmbB336
ClCG08G002370Wax gourdwcgwgoB633
ClCG08G002370Cucumber (Gy14) v1cgywcgB627
ClCG08G002370Cucurbita maxima (Rimu)cmawcgB031
ClCG08G002370Cucurbita moschata (Rifu)cmowcgB024
ClCG08G002370Cucurbita moschata (Rifu)cmowcgB429
ClCG08G002370Wild cucumber (PI 183967)cpiwcgB526
ClCG08G002370Cucumber (Chinese Long) v2cuwcgB500
ClCG08G002370Melon (DHL92) v3.5.1mewcgB297
ClCG08G002370Watermelon (97103) v1wcgwmB410
ClCG08G002370Cucurbita pepo (Zucchini)cpewcgB532
ClCG08G002370Bottle gourd (USVL1VR-Ls)lsiwcgB440
ClCG08G002370Cucumber (Gy14) v2cgybwcgB457