ClCG08G000260.1 (mRNA) Watermelon (Charleston Gray)
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ACTCCCAAGCAGATGCAGTCCACAACTGGTGCTGGTGCTACTGGTAGTCGTAGCTCCGGCGGCGGTACCGGCGGTGGCCTCGCTCGCTTCCGCTCTGCCCCTGCCGCCTGGTTGGAAGCGCTTTTGGAGGACGACGAGGAGGACCCTCTCAAGCCCAATCACTGCTTGACTCAGCTTCTCGCCGCCGACTCCTCCGACCTCGACTCTCCCGCTGATCAGCCCTTGTTCGACCCCAATCCCTCCCCGGCCTTCCACAGACAGAATAGCTCTCCCGCCGAGTTTCTCGCCGCCTCTGGAATTGGGGAAGGATTTTACACTGCCTATGCTCTCAATTCCTCCCCCACTCTTGACATCTCTCCCACCTCCAAGCGAGCTAGAGAAGTCGACCCCCAAAACTTCTCCCCCAAATTTTCACCTCAACTGGTAATCATCTTATTTAGAAGCCTCTGTTTCGCGATTCCCATTCAGGATTTCATTTCACTCTAGTTTTCCTTTGATTATGGTCTCACCAGCAACCTAGTTTATTTTGATTTTTAAGTGAAATTTTCGGCAGAAAAGGGAAGGAAGTGGAGTTTCCAGTTTAATAGACATGGAAATGGAGAAGTTATTGGAGGACTCTGTGCCCTGCCGGGTAAGGGCCAAGCGTGGCTGTGCGACGCATCCTCGGAGCATTGCGGAGAGGGTTAGTTCTTTTCACCTTATATCTTCCTTCACTGTTTTCGTTGACTACTTTTCAATAACCAGTCTCACCTCTCCATAACATATGCTGACTTTTGAGATGGATTCCTTTGCTCTATTCACCGTTCATCATCTGTGCTCTCAACTTTGACATTCTATCCCTATCCAATTTGGTGGCCTTTCTGCTGTTATTTTATCGAATAACCTTACTCTTTTTTCTATTATTTGTTGCCAAGCTATGTCAAATCATTACTTGTTAGTCTAATCACTATGTCGGGTCAACAAAACACACAACAAAGAGGTATGTCGATAAGTCGATTACTTATTTATTTTCTTTTTTTTGGTTTTCTTGATGGTAGGTTCGTAGGACTAGAATTAGTGACAGAATAAGGAAGCTTCAGGAGGTTGTCCCCAACATGGATAAGGTAAACTATGTCATGATTGATCATTATGATTGAATTTAGATATATCTTTTGTGATATATATTGAGAATGACTGTATTTTGTTCTGCCATGTGATTATTCTTGCAGTTCCTTTCTTGAATTCCATATTTGGCTGGTACTTTACTTTATGAATAATGAAGTCTAACGTGTACACAATTAGTTGAGTAATAGGGACAAGATTGTGTGGTTGCTTTCATTGATGTTGTTTTTAAACATTAATAATTTCAAATAATATATATATATATATATATATATATATATATATATATATTTTCTGGTGGGGCATAGAAACCATTTGATTGATTGACGAAACAGATTACCAGAAGAAGAAAAAACAAGCATATCAGTATGTAATTACAAAAACCAACTACAGACCTACAGTGTGTCATGAGGGACGGTAGACTATAGTTACAAAGTGCATTTTACATCTTCTAACCAGCAAAGCCATCTTACAAATGATTGGACTGATAAAGTTTACCAAATTTTACTGGAGTTAGTTTTAAATGGATGTGGCATGTACGTTAATTTATTTTATTTTTGGTCTTTTCATGTATCAGTTGTTATGTGAGCGGTGGTTTACTAATATGTAGAAAATAAATATTCATCTACTTTCTGGATAGTAAACAATTTTACTAAATAAATGAAATGACACTAGAGAGATACTAACCAAACAGTTTACAAAACACTTCTCTAATTAAAAAGGAGAGAATTTAAGCTGTCATTGTTGAAAGGAGGTATATTTTTAGACCAGTAAAGAGCCATAAAGCAGCTGTTTCAAAGGCTTCTTGTGGACAAGTTTTCTTGTCTTGGAAAATCCTAAGATTCCTTTTGTTTCATATCATCCATAAAACCGCTCTGATGGTGTTTAGCCAAAGAATACTCTTTGTAGATTTGAATATGCGTTCTGTTAATATCATTTCAATTCAATCCGTAAGCTCTAAAAGGTGGGATGGCATTCCAGCCAAGCGCACTAAAGATTTCAGTCCAAACTTTTGCAGAGAAGGGCAGTATAGTGAATCAAGATGTGCCTTTAAGATTCTTCAGCTTCTTAATACTAACCAAGCGATCTAGACCTCAGCTACATGCATGATGCCAATTAGTCCATTGAAGATTAGGCCAATGAGGAGAGCAACTTAGGATTGGATATGTAAGGGCGAGGCTGGGATTATTTACAGAGTGTATGCATCTGTTTGTTGGAATTCTGGAAGAACTTCAACGCATTTTGGTGACTTATCTTTGATGGTTGATTTTGAGATGAGAGCTTCTGAATATTTATATGGATAAGTAAACTTTTGGTCTCTTCCATGAGGTTTCAAAGGAACATTTTAGTCTTTGAAGCTAGAAAATAGTTCTAAATAGTGCTTGGGATTTGACCGTTAACTAATTGATGGAAAAATATAATTATTAATCTAATGGTGCAAAGCTTGGAAGCATCCATTTCAACATGTTCCCTTCTCCAATTGAGCTGAAAATTAGGTAAGCAGGTGGAGCGGCAGAGATGAAATTGGAGGCAGACTGGAGCTTCAATTCAACTAAGAACAAACTGGAAGCTGCCACCAACCTGTAAAGAAAAAACGAAGGGTTGGGTTAACTGACCCTACTGCTGAGGGAAATCCGTGTGTGCTACTTGAACGGTGTCTTAAGTAAATGCATATAATAAGCCCATAATATCTTCATTACCCACTCTGATTCTCTCTCTACAAACCCATTACCCTAAAGATAATACTTCCTGTAAACATGGGTTTTTGGAGAAATGAGTTGGAATCAATAACATGGTTTGGGTTTAGTGCTATTTGGATTTTGGACGGAGGGACTTTCTTTCTAGATCTGCTGGAACACAAGCATGAAGGACATCTGCTGAGAACAACCAAAAAATGCGGTGGGTAAGAGATAATGATGAAGGCATACGTTCCCAGATGACGATGGTGGTAGGCATTGTGGGTCATTGGAGGTTGGAGAAGAGTGGAGCAAATGACCAGAAGGGAAGAGAATGGAGGACGAAAGAGGGAGAGAGGGGAGTTGGCAAGTTGGAAAAGCAAAACACTTACTTGATCAACACATTTTGATTCCGTTTGTCCACTGATGGTGAATTGAGGTTAATCATTTAAAACCATTTTTTTTCAAACTTGTGGGAGCAAGGCTCAAACTTGAGGACCAATAATGCTCTGCCAATATTTAAATTGCTATGGGTAGGATTCTTATTTCTGCAATGGCTGTTTGTTTCAGGCCAGAACCCACGTTGTTTTCCTACTAGACATATTCTCCTTATACATTCCAAATCATTCTTACTGTTTCTAACCCTTGTGAGACAATAAGCATTGTTTTGATATGGACAAAAGACTTGTGTCTATATCTGATTTATGGAATTCGTGAAACTATTTGACGTCATCTATATTTGTTAGCTGGAGCCTAAATATATTTATTGATCTGTCGTTTTCAATCTTGTTGCAGCAAACAAACACTGCAGATATGTTAGAAGAAGCAGTAGAGTATGTCAAATTCCTTCAAAAGCAAATTCAGGTATTGAACTGAACTAGATACTCTCTTGGATTCATCAATAAGGTTATATGAAAACTGTTGGAGCCTCAAGAATCATTTATTCGGCTATTATTTCAAATGACGTCGATTTGAACACCTAATCTGTAGCGGAGTTATATCACTTTGCTTTCAGTAGCTATAAAGTTACAACTTAAATACGTTGAAATTTAGACAAACTGAATCGCCCTGAAACCTGACAGGAACTCACGGAGCATCAGCGCAGGTGCAAATGCATGGTGAAGGAATGACATGTTGAAGGAGGAAGACTACTCCAGCCTCTGCAGAAATCGCCCTTCCACGATTACTGTAAATTAGTAGATTTCTTGGTTGAAAGGTAGTAAAAGGTAAATTGCTGTTTTTGCTATAATATTGTATTCTCTTTGGTTCTAAAGAAAATATCAACCTTGTAATGCATGCATTCAAATATATTGCATTCGTACGCAATAAGCAGGTGTAACAAAATGTGGGGAACTGCTCTCCTTTCTTTTTTTTCTTTCTTTTTTT ACTCCCAAGCAGATGCAGTCCACAACTGGTGCTGGTGCTACTGGTAGTCGTAGCTCCGGCGGCGGTACCGGCGGTGGCCTCGCTCGCTTCCGCTCTGCCCCTGCCGCCTGGTTGGAAGCGCTTTTGGAGGACGACGAGGAGGACCCTCTCAAGCCCAATCACTGCTTGACTCAGCTTCTCGCCGCCGACTCCTCCGACCTCGACTCTCCCGCTGATCAGCCCTTGTTCGACCCCAATCCCTCCCCGGCCTTCCACAGACAGAATAGCTCTCCCGCCGAGTTTCTCGCCGCCTCTGGAATTGGGGAAGGATTTTACACTGCCTATGCTCTCAATTCCTCCCCCACTCTTGACATCTCTCCCACCTCCAAGCGAGCTAGAGAAGTCGACCCCCAAAACTTCTCCCCCAAATTTTCACCTCAACTGAAAAGGGAAGGAAGTGGAGTTTCCAGTTTAATAGACATGGAAATGGAGAAGTTATTGGAGGACTCTGTGCCCTGCCGGGTAAGGGCCAAGCGTGGCTGTGCGACGCATCCTCGGAGCATTGCGGAGAGGGTTCGTAGGACTAGAATTAGTGACAGAATAAGGAAGCTTCAGGAGGTTGTCCCCAACATGGATAAGCAAACAAACACTGCAGATATGTTAGAAGAAGCAGTAGAGTATGTCAAATTCCTTCAAAAGCAAATTCAGGAACTCACGGAGCATCAGCGCAGGTGCAAATGCATGGTGAAGGAATGACATGTTGAAGGAGGAAGACTACTCCAGCCTCTGCAGAAATCGCCCTTCCACGATTACTGTAAATTAGTAGATTTCTTGGTTGAAAGGTAGTAAAAGGTAAATTGCTGTTTTTGCTATAATATTGTATTCTCTTTGGTTCTAAAGAAAATATCAACCTTGTAATGCATGCATTCAAATATATTGCATTCGTACGCAATAAGCAGGTGTAACAAAATGTGGGGAACTGCTCTCCTTTCTTTTTTTTCTTTCTTTTTTT ATGCAGTCCACAACTGGTGCTGGTGCTACTGGTAGTCGTAGCTCCGGCGGCGGTACCGGCGGTGGCCTCGCTCGCTTCCGCTCTGCCCCTGCCGCCTGGTTGGAAGCGCTTTTGGAGGACGACGAGGAGGACCCTCTCAAGCCCAATCACTGCTTGACTCAGCTTCTCGCCGCCGACTCCTCCGACCTCGACTCTCCCGCTGATCAGCCCTTGTTCGACCCCAATCCCTCCCCGGCCTTCCACAGACAGAATAGCTCTCCCGCCGAGTTTCTCGCCGCCTCTGGAATTGGGGAAGGATTTTACACTGCCTATGCTCTCAATTCCTCCCCCACTCTTGACATCTCTCCCACCTCCAAGCGAGCTAGAGAAGTCGACCCCCAAAACTTCTCCCCCAAATTTTCACCTCAACTGAAAAGGGAAGGAAGTGGAGTTTCCAGTTTAATAGACATGGAAATGGAGAAGTTATTGGAGGACTCTGTGCCCTGCCGGGTAAGGGCCAAGCGTGGCTGTGCGACGCATCCTCGGAGCATTGCGGAGAGGGTTCGTAGGACTAGAATTAGTGACAGAATAAGGAAGCTTCAGGAGGTTGTCCCCAACATGGATAAGCAAACAAACACTGCAGATATGTTAGAAGAAGCAGTAGAGTATGTCAAATTCCTTCAAAAGCAAATTCAGGAACTCACGGAGCATCAGCGCAGGTGCAAATGCATGGTGAAGGAATGA MQSTTGAGATGSRSSGGGTGGGLARFRSAPAAWLEALLEDDEEDPLKPNHCLTQLLAADSSDLDSPADQPLFDPNPSPAFHRQNSSPAEFLAASGIGEGFYTAYALNSSPTLDISPTSKRAREVDPQNFSPKFSPQLKREGSGVSSLIDMEMEKLLEDSVPCRVRAKRGCATHPRSIAERVRRTRISDRIRKLQEVVPNMDKQTNTADMLEEAVEYVKFLQKQIQELTEHQRRCKCMVKE
BLAST of ClCG08G000260.1 vs. Swiss-Prot
Match: BH080_ARATH (Transcription factor bHLH80 OS=Arabidopsis thaliana GN=BHLH80 PE=2 SV=1) HSP 1 Score: 273.9 bits (699), Expect = 1.7e-72 Identity = 155/265 (58.49%), Postives = 186/265 (70.19%), Query Frame = 1
BLAST of ClCG08G000260.1 vs. Swiss-Prot
Match: BH081_ARATH (Transcription factor bHLH81 OS=Arabidopsis thaliana GN=BHLH81 PE=2 SV=1) HSP 1 Score: 270.0 bits (689), Expect = 2.5e-71 Identity = 152/263 (57.79%), Postives = 182/263 (69.20%), Query Frame = 1
BLAST of ClCG08G000260.1 vs. Swiss-Prot
Match: BH130_ARATH (Transcription factor bHLH130 OS=Arabidopsis thaliana GN=BHLH130 PE=1 SV=1) HSP 1 Score: 139.0 bits (349), Expect = 6.6e-32 Identity = 65/104 (62.50%), Postives = 83/104 (79.81%), Query Frame = 1
HSP 2 Score: 32.7 bits (73), Expect = 6.7e+00 Identity = 14/24 (58.33%), Postives = 17/24 (70.83%), Query Frame = 1
BLAST of ClCG08G000260.1 vs. Swiss-Prot
Match: BH122_ARATH (Transcription factor bHLH122 OS=Arabidopsis thaliana GN=BHLH122 PE=1 SV=1) HSP 1 Score: 133.3 bits (334), Expect = 3.6e-30 Identity = 65/102 (63.73%), Postives = 81/102 (79.41%), Query Frame = 1
BLAST of ClCG08G000260.1 vs. Swiss-Prot
Match: BH128_ARATH (Transcription factor bHLH128 OS=Arabidopsis thaliana GN=BHLH128 PE=1 SV=1) HSP 1 Score: 124.0 bits (310), Expect = 2.2e-27 Identity = 93/247 (37.65%), Postives = 122/247 (49.39%), Query Frame = 1
HSP 2 Score: 31.2 bits (69), Expect = 1.9e+01 Identity = 15/39 (38.46%), Postives = 25/39 (64.10%), Query Frame = 1
BLAST of ClCG08G000260.1 vs. TrEMBL
Match: A0A0A0KY01_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G652220 PE=4 SV=1) HSP 1 Score: 420.6 bits (1080), Expect = 1.3e-114 Identity = 215/244 (88.11%), Postives = 223/244 (91.39%), Query Frame = 1
BLAST of ClCG08G000260.1 vs. TrEMBL
Match: A0A061FKW9_THECC (Basic helix-loop-helix DNA-binding superfamily protein isoform 2 OS=Theobroma cacao GN=TCM_036484 PE=4 SV=1) HSP 1 Score: 301.6 bits (771), Expect = 8.5e-79 Identity = 167/259 (64.48%), Postives = 191/259 (73.75%), Query Frame = 1
BLAST of ClCG08G000260.1 vs. TrEMBL
Match: A0A0B0NRZ3_GOSAR (Transcription factor bHLH80-like protein OS=Gossypium arboreum GN=F383_04086 PE=4 SV=1) HSP 1 Score: 294.7 bits (753), Expect = 1.0e-76 Identity = 157/259 (60.62%), Postives = 191/259 (73.75%), Query Frame = 1
BLAST of ClCG08G000260.1 vs. TrEMBL
Match: A0A0D2S5I7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G138300 PE=4 SV=1) HSP 1 Score: 289.3 bits (739), Expect = 4.4e-75 Identity = 155/259 (59.85%), Postives = 190/259 (73.36%), Query Frame = 1
BLAST of ClCG08G000260.1 vs. TrEMBL
Match: A0A087GD52_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA8G431300 PE=4 SV=1) HSP 1 Score: 285.4 bits (729), Expect = 6.3e-74 Identity = 158/247 (63.97%), Postives = 182/247 (73.68%), Query Frame = 1
BLAST of ClCG08G000260.1 vs. TAIR10
Match: AT1G35460.1 (AT1G35460.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein) HSP 1 Score: 273.9 bits (699), Expect = 9.7e-74 Identity = 155/265 (58.49%), Postives = 186/265 (70.19%), Query Frame = 1
BLAST of ClCG08G000260.1 vs. TAIR10
Match: AT4G09180.1 (AT4G09180.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein) HSP 1 Score: 270.0 bits (689), Expect = 1.4e-72 Identity = 152/263 (57.79%), Postives = 182/263 (69.20%), Query Frame = 1
BLAST of ClCG08G000260.1 vs. TAIR10
Match: AT2G42280.1 (AT2G42280.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein) HSP 1 Score: 139.0 bits (349), Expect = 3.7e-33 Identity = 65/104 (62.50%), Postives = 83/104 (79.81%), Query Frame = 1
HSP 2 Score: 32.7 bits (73), Expect = 3.7e-01 Identity = 14/24 (58.33%), Postives = 17/24 (70.83%), Query Frame = 1
BLAST of ClCG08G000260.1 vs. TAIR10
Match: AT1G51140.1 (AT1G51140.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein) HSP 1 Score: 133.3 bits (334), Expect = 2.0e-31 Identity = 65/102 (63.73%), Postives = 81/102 (79.41%), Query Frame = 1
BLAST of ClCG08G000260.1 vs. TAIR10
Match: AT1G05805.1 (AT1G05805.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein) HSP 1 Score: 124.0 bits (310), Expect = 1.2e-28 Identity = 93/247 (37.65%), Postives = 122/247 (49.39%), Query Frame = 1
HSP 2 Score: 31.2 bits (69), Expect = 1.1e+00 Identity = 15/39 (38.46%), Postives = 25/39 (64.10%), Query Frame = 1
BLAST of ClCG08G000260.1 vs. NCBI nr
Match: gi|449447621|ref|XP_004141566.1| (PREDICTED: transcription factor bHLH81 isoform X1 [Cucumis sativus]) HSP 1 Score: 420.6 bits (1080), Expect = 1.8e-114 Identity = 215/244 (88.11%), Postives = 223/244 (91.39%), Query Frame = 1
BLAST of ClCG08G000260.1 vs. NCBI nr
Match: gi|659119475|ref|XP_008459678.1| (PREDICTED: transcription factor bHLH80 isoform X1 [Cucumis melo]) HSP 1 Score: 420.6 bits (1080), Expect = 1.8e-114 Identity = 219/244 (89.75%), Postives = 223/244 (91.39%), Query Frame = 1
BLAST of ClCG08G000260.1 vs. NCBI nr
Match: gi|778708105|ref|XP_011656122.1| (PREDICTED: transcription factor bHLH81 isoform X2 [Cucumis sativus]) HSP 1 Score: 366.3 bits (939), Expect = 4.1e-98 Identity = 193/244 (79.10%), Postives = 201/244 (82.38%), Query Frame = 1
BLAST of ClCG08G000260.1 vs. NCBI nr
Match: gi|659119477|ref|XP_008459679.1| (PREDICTED: transcription factor bHLH80 isoform X2 [Cucumis melo]) HSP 1 Score: 366.3 bits (939), Expect = 4.1e-98 Identity = 197/244 (80.74%), Postives = 201/244 (82.38%), Query Frame = 1
BLAST of ClCG08G000260.1 vs. NCBI nr
Match: gi|590603789|ref|XP_007020097.1| (Basic helix-loop-helix DNA-binding superfamily protein isoform 2 [Theobroma cacao]) HSP 1 Score: 301.6 bits (771), Expect = 1.2e-78 Identity = 167/259 (64.48%), Postives = 191/259 (73.75%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
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