ClCG06G004010.1 (mRNA) Watermelon (Charleston Gray)
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGTTCTCTATCAAGATTGACGACCTTGATCCTTTCTTGGATGCAACCACTCTATTCGCCGAAATTGTGAACGACGAAATCTGCCTGAAAATCTCACCGTCGACGTTTTCGATAATTTCTCGCTACCAGCACCCTCTTTTCTTTGCAATGATGATTATGCCGCCACCATTTTTCGCTGAGTATTCCGTTGATCGGAATCACAATTCAAAGATTTCCCTATCGGCCTTCCACAATGCTATGTTGGAAGGCCAAAGCTTTTGTTCTTCAATGACCATCCATGTTCATGAACAAGAAAATAATATACACCTTATATTTGAGCCTTCAAGTTAGTATACATATGCGCGATACCCTTTCTCCTCTGTTTCTTCTCTTCAAAAATGAATAATCTTGGTTCTCAATGGACATTCTTTTTTTGTGTTTTTGTTTTTTCTATTTTCTTCATTTTTGTCATTGCTTGATTCTTTTATGCATGCTCAGAATTTTTTTTTAGAAAAAGATACGATAGAATATGGGGTCACTAGGTAAATTTTCGGGTATTCGAAATCAATTTTCTTGCAACTTTTTTAATTAAAAGCCCATCATATCAATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAACAAACATCATTCAAATACTTATATACCTCAATCTTGCTTGCTTTAGAATTTCTTGTGTTAATGATTGTATTTTGAATTTCGTCACATTTTAATTCATTTTTGTACTTTTACTAAATCTAAAATTAAGTTCATGTTTTTAGTTTGTTGATTATTATTTTTCTAAAAAGAAAATGACTCCATTAGCATTCTCATAATAAATTTTAGGAAAATATATCAACCATTTTCTCTTAGATCTAAATTATTATTATTATTATTATCATTTTAATCCATTTTGGTAAAAAAAAAAAAAAAAAAAAATGTCAAAGGTCAATTCATATGCAAATTATGATAATTATTGCTATCATTATATGACTTTCTACTTTTATTTTAAGGGCCTTCTGCACTACCATTGCATCATGAATTGACATTCCTGCCTATGGAAGACTGGTCGCTTGGCGAAGTTACCTTATTAAGTGGAAAAATTTTATCCATTGAGTCAGAAATGTTTAGCAATATTTTGACAACATTTTCTGTGTACAATGAAGCTGATTCAAGTAATGCAATTCTTCTTCTCTCATTTTTCATAAATTTTACTTTAAACAAAAAAAAGTGGTGTATATATGATCTTGCTAAAATCTTCTTTCATTTCTCACAGTTTTGATTACTTTAGTGGGTACACAAGCCACCTTCTCTGTCATTCCATTTGATCACGAGATAACTGTTACTGAAGAGGTATGTTTTGTGAACTTTGTGCAAATTAATTATTTTAATTATTTTAAATGAAATATATATATACACACATATTATAGTTATGTGTAGATAAGGTTGAAAAGTTGTCAAATCACTAATCAAAACATAAGCTTAAGTTGATATGAGTTGTGGCGAATTTAATATTATATCAATACTCTATCACTTCTATACCTTCCATTGTGTGTTTGAAAATTTGTTTGAACGGAAAAAAAATGACTTTGCAAGAGTTAAAAAACATAAGATTTCTACCAAATTAAAGGGAAAAATATCTTTTTGGTCTATAAGTTTCAAAATGTTGATTTTTTTTTTTTTTGTTAAGTTTTGAGTTTGATATCAATTTAGTCCCCTAAGTTTTAAAATGTTACAATTTAACCTTGAAATATTTGAGTTTTGTTTCAATTAAATCTTTAGATTGACTTATACTTTTAATTTTGATTTTTTTACTGAATACTCACATTCAGTCTTTAGTATTAATGTATACTAATTAATTTAAAACAATTAAAACAACTCTAATTAACTAAGTTTCACAATTTTGTCATCACGATTAAAATTAATTCAAATTTTCGTATTATTTTTTAAAAATCTTAAAATCTAAGGGACAAATTGAAACAAAACTAAAAAATCCATCTTAGGGGAAACATTACAACATTTTGAAACCTTTGCACCAAGTGGGAACTAAACCCAAGATGTAGGGACCGAAAATGTAATTTTCGGTATGTTAGATCACCCGTCAATCCAAAAAGACTCTAATGTATTTTACTTGAATTTATTTATGTTGTGCAGAGTGGAGATTGTTTGGTATTTCTATGGGATACCGAAGTTGAAGTTCATATGCATATGCCTCTCCATCCATCCTCATTTTTCAGTAATTGTGGAATTCAAGCTCGAAGGGTATGGTTCTACGAAACAGGCGATTCTTGTACAATAATCTATTTTCCTTTTGATGTGTATGAGCATTTTATGATGATTTGTTTTCCCTTTGTAGATGAAAACTCGTCTCAAGATTAACTCACACAGTCACACTCACTAAAAAAATATATACATTTAATAGTCTTAGTTGGGATTTTGTGTGCTATATGATACAACTTCTCTTGGCCATTCAAGGAGTTCATAAACAATTAACATTTTGTAGAGAAGATTAGTAGTTGCACCATAACATCGCAAGTGATCCTGAGTTGTACACCTTTTCAAACGTTGTCTCCTTTATAGAAATCCAACAAGTTTCGTCATTATCTTTGTCATCTCCTCAATATGTTTGGGTCGTGAAAATTAGTCAAAAGCTTATCTATTGTAAGTCGTGATCAACATCCATAAACATTAGATTATTCTATAGAGCAACATTAACTTAGTACTAAAAATATTAGGGGCAGTTGCAGAAATGGCAAATTTTTTTATTAAAATTAGGCCCATAGCCCATGTTTTATGATTTTGCAAAAATGACAAAATCCTTAACCTCAGCCCAATTTCATTGATGGATTAAATAGAAAATGCCGAAAATACCCCTACATATATTTGAATCACTTTGAGCTCTCTTCTTCTTCACGTAACGTATTCTCTATATTCACGTGTTTTATGTTGTTGAAAGTTGAAAAAACAGTTGCTTTATTTTGTGTGGGGAGAAAGGTTCTTTACCAGAAATGTTTAGACTTATTAGAATTCCTGGGAAAATAATATTTTGCAGTCAACTTTACGAAAAGGAACTTCATAAGTTGAAAGAAAAAAAGAAAAAAGGAAAAAAAATGATTCCGTCAACTTTATGGAAAATTACCGAACTCAAAAGAATTAATAAAATATGTATATATTTCAGTTTTTTTTTTCTTTTTTTTTTTTTTAAAAAAATAATGAATTGGATAAAAAAAAAATTTAGTCTATCTTTACAAATAGTTTCCATGCAACTTGTTTTTTGGAAATTGTTTTCAAAAGGACTCTATTTGAACGCTAAATCCATGTTTCAATGCATGGTTGATTTATTTTAGGAGTTTTTGATATTACAAGATTTGATTTGTATATGTTCCGAACTTTATGTCCATTTCTTTTGGCCATTAAATAATAGTTTTTCTTGAATAAGTAAAAGTTAGATCTAGAAAACAGCACCAAACTGCGGATAAATTCTTAATTAGGATGAGAATGAATGAAGGTTTTTGTTAAAAGAAGTGATTTGAAAAGGAGATTTGTGTTTAATGCCTTGTGTTTATGTGGAAATTTTAGACTTACATCTTAGAGCTAGGTTTTTAATTGGCAGGTATATTATTGAAACACCTAAATTTCTTAGCATTTTCACATTACCACCGCCATGTTCTCGATCAAGGTTGACAACCTTGATCCTTTTCTCGATGCAACCTCTCTATTCACTGAATTTATTAACGACGAGATCTGCGTGAAATTCTCGCCATCGACGTTCTCGATAATTGCTCGGTACCAATGCCCTCCCTTCTTTGCAATGATGTTCATGCCCCATCCATTATTCGCCGAGTATTCCGTTGATCGGAATCACATTTCCAGGATTTCCCTCAGATGCTTCCACAATGCTTTGTTGGAAGGCCAAAGCTATTCCTCTATGAGTATGCATCTCCAGGAACCCCAAAATAGCATACTCCTAAAATTTGAGCCTTCAAGTTAG ATGTTCTCTATCAAGATTGACGACCTTGATCCTTTCTTGGATGCAACCACTCTATTCGCCGAAATTGTGAACGACGAAATCTGCCTGAAAATCTCACCGTCGACGTTTTCGATAATTTCTCGCTACCAGCACCCTCTTTTCTTTGCAATGATGATTATGCCGCCACCATTTTTCGCTGAGTATTCCGTTGATCGGAATCACAATTCAAAGATTTCCCTATCGGCCTTCCACAATGCTATGTTGGAAGGCCAAAGCTTTTGTTCTTCAATGACCATCCATGTTCATGAACAAGAAAATAATATACACCTTATATTTGAGCCTTCAAGGCCTTCTGCACTACCATTGCATCATGAATTGACATTCCTGCCTATGGAAGACTGGTCGCTTGGCGAAGTTACCTTATTAAGTGGAAAAATTTTATCCATTGAGTCAGAAATGTTTAGCAATATTTTGACAACATTTTCTGTGTACAATGAAGCTGATTCAATTTTGATTACTTTAGTGGGTACACAAGCCACCTTCTCTGTCATTCCATTTGATCACGAGATAACTGTTACTGAAGAGAGTGGAGATTGTTTGGTATTTCTATGGGATACCGAAGTTGAAGTTCATATGCATATGCCTCTCCATCCATCCTCATTTTTCAGTAATTGTGGAATTCAAGCTCGAAGGGTTGACAACCTTGATCCTTTTCTCGATGCAACCTCTCTATTCACTGAATTTATTAACGACGAGATCTGCGTGAAATTCTCGCCATCGACGTTCTCGATAATTGCTCGGTACCAATGCCCTCCCTTCTTTGCAATGATGTTCATGCCCCATCCATTATTCGCCGAGTATTCCGTTGATCGGAATCACATTTCCAGGATTTCCCTCAGATGCTTCCACAATGCTTTGTTGGAAGGCCAAAGCTATTCCTCTATGAGTATGCATCTCCAGGAACCCCAAAATAGCATACTCCTAAAATTTGAGCCTTCAAGTTAG ATGTTCTCTATCAAGATTGACGACCTTGATCCTTTCTTGGATGCAACCACTCTATTCGCCGAAATTGTGAACGACGAAATCTGCCTGAAAATCTCACCGTCGACGTTTTCGATAATTTCTCGCTACCAGCACCCTCTTTTCTTTGCAATGATGATTATGCCGCCACCATTTTTCGCTGAGTATTCCGTTGATCGGAATCACAATTCAAAGATTTCCCTATCGGCCTTCCACAATGCTATGTTGGAAGGCCAAAGCTTTTGTTCTTCAATGACCATCCATGTTCATGAACAAGAAAATAATATACACCTTATATTTGAGCCTTCAAGGCCTTCTGCACTACCATTGCATCATGAATTGACATTCCTGCCTATGGAAGACTGGTCGCTTGGCGAAGTTACCTTATTAAGTGGAAAAATTTTATCCATTGAGTCAGAAATGTTTAGCAATATTTTGACAACATTTTCTGTGTACAATGAAGCTGATTCAATTTTGATTACTTTAGTGGGTACACAAGCCACCTTCTCTGTCATTCCATTTGATCACGAGATAACTGTTACTGAAGAGAGTGGAGATTGTTTGGTATTTCTATGGGATACCGAAGTTGAAGTTCATATGCATATGCCTCTCCATCCATCCTCATTTTTCAGTAATTGTGGAATTCAAGCTCGAAGGGTTGACAACCTTGATCCTTTTCTCGATGCAACCTCTCTATTCACTGAATTTATTAACGACGAGATCTGCGTGAAATTCTCGCCATCGACGTTCTCGATAATTGCTCGGTACCAATGCCCTCCCTTCTTTGCAATGATGTTCATGCCCCATCCATTATTCGCCGAGTATTCCGTTGATCGGAATCACATTTCCAGGATTTCCCTCAGATGCTTCCACAATGCTTTGTTGGAAGGCCAAAGCTATTCCTCTATGAGTATGCATCTCCAGGAACCCCAAAATAGCATACTCCTAAAATTTGAGCCTTCAAGTTAG MFSIKIDDLDPFLDATTLFAEIVNDEICLKISPSTFSIISRYQHPLFFAMMIMPPPFFAEYSVDRNHNSKISLSAFHNAMLEGQSFCSSMTIHVHEQENNIHLIFEPSRPSALPLHHELTFLPMEDWSLGEVTLLSGKILSIESEMFSNILTTFSVYNEADSILITLVGTQATFSVIPFDHEITVTEESGDCLVFLWDTEVEVHMHMPLHPSSFFSNCGIQARRVDNLDPFLDATSLFTEFINDEICVKFSPSTFSIIARYQCPPFFAMMFMPHPLFAEYSVDRNHISRISLRCFHNALLEGQSYSSMSMHLQEPQNSILLKFEPSS
BLAST of ClCG06G004010.1 vs. TrEMBL
Match: A0A0A0LIE0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G155090 PE=4 SV=1) HSP 1 Score: 196.4 bits (498), Expect = 5.3e-47 Identity = 92/103 (89.32%), Postives = 99/103 (96.12%), Query Frame = 1
BLAST of ClCG06G004010.1 vs. TrEMBL
Match: A0A0A0LIE0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G155090 PE=4 SV=1) HSP 1 Score: 153.7 bits (387), Expect = 3.9e-34 Identity = 75/108 (69.44%), Postives = 88/108 (81.48%), Query Frame = 1
HSP 2 Score: 181.8 bits (460), Expect = 1.3e-42 Identity = 92/163 (56.44%), Postives = 120/163 (73.62%), Query Frame = 1
BLAST of ClCG06G004010.1 vs. TrEMBL
Match: A0A0A0KB76_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G002310 PE=4 SV=1) HSP 1 Score: 141.0 bits (354), Expect = 2.6e-30 Identity = 68/103 (66.02%), Postives = 81/103 (78.64%), Query Frame = 1
HSP 2 Score: 122.5 bits (306), Expect = 9.7e-25 Identity = 65/164 (39.63%), Postives = 99/164 (60.37%), Query Frame = 1
BLAST of ClCG06G004010.1 vs. TrEMBL
Match: A0A0A0K902_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G020220 PE=4 SV=1) HSP 1 Score: 95.1 bits (235), Expect = 1.7e-16 Identity = 46/105 (43.81%), Postives = 71/105 (67.62%), Query Frame = 1
HSP 2 Score: 77.4 bits (189), Expect = 3.6e-11 Identity = 39/106 (36.79%), Postives = 65/106 (61.32%), Query Frame = 1
BLAST of ClCG06G004010.1 vs. TrEMBL
Match: A0A0A0K9W4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G002290 PE=4 SV=1) HSP 1 Score: 75.1 bits (183), Expect = 1.8e-10 Identity = 37/105 (35.24%), Postives = 62/105 (59.05%), Query Frame = 1
BLAST of ClCG06G004010.1 vs. NCBI nr
Match: gi|659131763|ref|XP_008465845.1| (PREDICTED: uncharacterized protein LOC103503439 [Cucumis melo]) HSP 1 Score: 205.3 bits (521), Expect = 1.6e-49 Identity = 109/189 (57.67%), Postives = 137/189 (72.49%), Query Frame = 1
BLAST of ClCG06G004010.1 vs. NCBI nr
Match: gi|659131763|ref|XP_008465845.1| (PREDICTED: uncharacterized protein LOC103503439 [Cucumis melo]) HSP 1 Score: 121.7 bits (304), Expect = 2.4e-24 Identity = 57/104 (54.81%), Postives = 77/104 (74.04%), Query Frame = 1
HSP 2 Score: 196.4 bits (498), Expect = 7.6e-47 Identity = 92/103 (89.32%), Postives = 99/103 (96.12%), Query Frame = 1
BLAST of ClCG06G004010.1 vs. NCBI nr
Match: gi|700206404|gb|KGN61523.1| (hypothetical protein Csa_2G155090 [Cucumis sativus]) HSP 1 Score: 153.7 bits (387), Expect = 5.6e-34 Identity = 75/108 (69.44%), Postives = 88/108 (81.48%), Query Frame = 1
HSP 2 Score: 181.8 bits (460), Expect = 1.9e-42 Identity = 92/163 (56.44%), Postives = 120/163 (73.62%), Query Frame = 1
BLAST of ClCG06G004010.1 vs. NCBI nr
Match: gi|700190433|gb|KGN45637.1| (hypothetical protein Csa_6G002310 [Cucumis sativus]) HSP 1 Score: 141.0 bits (354), Expect = 3.8e-30 Identity = 68/103 (66.02%), Postives = 81/103 (78.64%), Query Frame = 1
HSP 2 Score: 136.0 bits (341), Expect = 1.2e-28 Identity = 81/227 (35.68%), Postives = 126/227 (55.51%), Query Frame = 1
BLAST of ClCG06G004010.1 vs. NCBI nr
Match: gi|659128729|ref|XP_008464344.1| (PREDICTED: uncharacterized protein LOC103502250 [Cucumis melo]) HSP 1 Score: 90.5 bits (223), Expect = 5.9e-15 Identity = 44/105 (41.90%), Postives = 69/105 (65.71%), Query Frame = 1
HSP 2 Score: 131.3 bits (329), Expect = 3.0e-27 Identity = 77/224 (34.38%), Postives = 124/224 (55.36%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
|