ClCG06G003990.1 (mRNA) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG06G003990.1
Type	mRNA
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Unknown protein
Location	CG_Chr06 : 4573945 .. 4574236 (+)
Sequence length	261

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTAAGTTTTTTGCTTTATAAGCAACTGCATGATTTCGTAGATGCCATCTCTGTCCTCGCCGAGACATTCAATGGCGCACTCAAACTCAAATTCTCACAGTCAAGGTTCTCTATAATGGCGGCTACATCACCTTCGTCTCATTGCATTTTAGCCCTTCAATTATCCCCTAATTTCTTCGCTGTATATTCTTGCAACAAACTTTTTATGATAGTATGAGCAATCTCCATGGTCTACAAAAATTCGTAGAAAATGGGATTATTGTCTAGTTTATCATAACATTGCATGCTAG

mRNA sequence

ATGTTAAGTTTTTTGCTTTATAAGCAACTGCATGATTTCGTAGATGCCATCTCTGTCCTCGCCGAGACATTCAATGGCGCACTCAAACTCAAATTCTCACAGTCAAGGTTCTCTATAATGGCGGCTACATCACCTTCGTCTCATTGCATTTTAGCCCTTCAATTATCCCCTAATTTCTTCGCTTATGAGCAATCTCCATGGTCTACAAAAATTCGTAGAAAATGGGATTATTGTCTAGTTTATCATAACATTGCATGCTAG

Coding sequence (CDS)

ATGTTAAGTTTTTTGCTTTATAAGCAACTGCATGATTTCGTAGATGCCATCTCTGTCCTCGCCGAGACATTCAATGGCGCACTCAAACTCAAATTCTCACAGTCAAGGTTCTCTATAATGGCGGCTACATCACCTTCGTCTCATTGCATTTTAGCCCTTCAATTATCCCCTAATTTCTTCGCTTATGAGCAATCTCCATGGTCTACAAAAATTCGTAGAAAATGGGATTATTGTCTAGTTTATCATAACATTGCATGCTAG

Protein sequence

MLSFLLYKQLHDFVDAISVLAETFNGALKLKFSQSRFSIMAATSPSSHCILALQLSPNFFAYEQSPWSTKIRRKWDYCLVYHNIAC

Homology

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BLAST of ClCG06G003990.1 vs. NCBI nr
Match: gi|659117587|ref|XP_008458680.1| (PREDICTED: uncharacterized protein LOC103498008 [Cucumis melo])

HSP 1 Score: 63.5 bits (153), Expect = 2.0e-07
Identity = 32/57 (56.14%), Postives = 38/57 (66.67%), Query Frame = 1


Query: 4  FLLYKQLHDFVDAISVLAETFNGALKLKFSQSRFSIMAATSPSSHCILALQLSPNFF 61
          F    Q+H F++AISVL ET      LKFS + FSIM A SPSS CI++LQLSP  F
Sbjct: 3  FFELPQIHGFLEAISVLTETSEDEFDLKFSPAIFSIMVAASPSSRCIISLQLSPQIF 59

The following BLAST results are available for this feature:

BLAST of ClCG06G003990.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659117587\|ref\|XP_008458680.1\|	2.0e-07	56.14	PREDICTED: uncharacterized protein LOC103498008 [Cucumis melo]	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
ClCG06G003990	ClCG06G003990	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
ClCG06G003990.1	ClCG06G003990.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG06G003990.1.cds1	ClCG06G003990.1.cds1	CDS
ClCG06G003990.1.cds2	ClCG06G003990.1.cds2	CDS