ClCG06G003990 (gene) Watermelon (Charleston Gray)

Overview
NameClCG06G003990
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionUnknown protein
LocationCG_Chr06 : 4573945 .. 4574236 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTAAGTTTTTTGCTTTATAAGCAACTGCATGATTTCGTAGATGCCATCTCTGTCCTCGCCGAGACATTCAATGGCGCACTCAAACTCAAATTCTCACAGTCAAGGTTCTCTATAATGGCGGCTACATCACCTTCGTCTCATTGCATTTTAGCCCTTCAATTATCCCCTAATTTCTTCGCTGTATATTCTTGCAACAAACTTTTTATGATAGTATGAGCAATCTCCATGGTCTACAAAAATTCGTAGAAAATGGGATTATTGTCTAGTTTATCATAACATTGCATGCTAG

mRNA sequence

ATGTTAAGTTTTTTGCTTTATAAGCAACTGCATGATTTCGTAGATGCCATCTCTGTCCTCGCCGAGACATTCAATGGCGCACTCAAACTCAAATTCTCACAGTCAAGGTTCTCTATAATGGCGGCTACATCACCTTCGTCTCATTGCATTTTAGCCCTTCAATTATCCCCTAATTTCTTCGCTTATGAGCAATCTCCATGGTCTACAAAAATTCGTAGAAAATGGGATTATTGTCTAGTTTATCATAACATTGCATGCTAG

Coding sequence (CDS)

ATGTTAAGTTTTTTGCTTTATAAGCAACTGCATGATTTCGTAGATGCCATCTCTGTCCTCGCCGAGACATTCAATGGCGCACTCAAACTCAAATTCTCACAGTCAAGGTTCTCTATAATGGCGGCTACATCACCTTCGTCTCATTGCATTTTAGCCCTTCAATTATCCCCTAATTTCTTCGCTTATGAGCAATCTCCATGGTCTACAAAAATTCGTAGAAAATGGGATTATTGTCTAGTTTATCATAACATTGCATGCTAG

Protein sequence

MLSFLLYKQLHDFVDAISVLAETFNGALKLKFSQSRFSIMAATSPSSHCILALQLSPNFFAYEQSPWSTKIRRKWDYCLVYHNIAC
Homology
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BLAST of ClCG06G003990 vs. NCBI nr
Match: gi|659117587|ref|XP_008458680.1| (PREDICTED: uncharacterized protein LOC103498008 [Cucumis melo])

HSP 1 Score: 63.5 bits (153), Expect = 2.0e-07
Identity = 32/57 (56.14%), Postives = 38/57 (66.67%), Query Frame = 1 

Query: 4  FLLYKQLHDFVDAISVLAETFNGALKLKFSQSRFSIMAATSPSSHCILALQLSPNFF 61
          F    Q+H F++AISVL ET      LKFS + FSIM A SPSS CI++LQLSP  F
Sbjct: 3  FFELPQIHGFLEAISVLTETSEDEFDLKFSPAIFSIMVAASPSSRCIISLQLSPQIF 59

The following BLAST results are available for this feature:
BLAST of ClCG06G003990 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659117587|ref|XP_008458680.1|2.0e-0756.14PREDICTED: uncharacterized protein LOC103498008 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG06G003990.1ClCG06G003990.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG06G003990Bottle gourd (USVL1VR-Ls)lsiwcgB029
ClCG06G003990Cucumber (Gy14) v2cgybwcgB443
ClCG06G003990Melon (DHL92) v3.6.1medwcgB119
ClCG06G003990Silver-seed gourdcarwcgB0073
ClCG06G003990Cucumber (Chinese Long) v3cucwcgB502
ClCG06G003990Watermelon (97103) v2wcgwmbB273
ClCG06G003990Watermelon (97103) v2wcgwmbB274
ClCG06G003990Wax gourdwcgwgoB504
ClCG06G003990Cucumber (Gy14) v1cgywcgB228
ClCG06G003990Cucurbita maxima (Rimu)cmawcgB328
ClCG06G003990Cucurbita maxima (Rimu)cmawcgB800
ClCG06G003990Cucurbita moschata (Rifu)cmowcgB325
ClCG06G003990Wild cucumber (PI 183967)cpiwcgB507
ClCG06G003990Cucumber (Chinese Long) v2cuwcgB480
ClCG06G003990Melon (DHL92) v3.5.1mewcgB124
ClCG06G003990Watermelon (97103) v1wcgwmB344
ClCG06G003990Cucurbita pepo (Zucchini)cpewcgB144