ClCG06G003940.1 (mRNA) Watermelon (Charleston Gray)
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGTTCTTAGTGAGACTTGAATTCTTTGATCCTCTTATGGATGCAACTTCTCGTTTTTCTCAAATTGCTAAAGAAGCCGATATCAAATTCACTCCATTAGACTTTTGGGTAATTGCTTCCAACCGATCCCCTCGCTTTGTCGCAGCCATTCAAATGTCCCACCATTGCTTCATCCACTACAATGTCGATGATGATCACACTTCAAGAATTTCCCTTGAATCCTTCCATGACGCTCTCTTGGATGGTGGAGCTTCTTCTTCAATGACCATTCATCTTCTCCAAAACATAAACCAAATGATGCTTAGATTCGAATCTTCAAGTTAGTATATACCTATAAATCAATCTTGGATTGCTCCAACAATAATCTTGTTTCTCTCTTTTTGTTCCAAGAACACACAACTTTTTTTCTTTTTTTCTTTTTTTAATTTTTACTTTTTAGGTCATGTGCCACACGTGCGTCATGAATTGACATTGACACCGTCACAAGAAGAGGATCTTGGAGAAGTTGATTATGCAAAATGTTTCTCAATTGATTCAAGGGAATTAAGACGTGTTATAACAGAATTACCTATCTTCCATGAGGACTCAAGTAAAACATGGGACTCTTCTTTTCTTAATTTAATAATTATATGTCTATTTCAAAAAAAATTAAAGTTGATTATGCAAAATGTTTGTTTGTCATAGTATGTGTTACTGCAACCAGTTCACAAGTCAAATTCTCTATTGCTTCTGAAGCGATTATTCTTACCAAAGAGGTATTGTTCTAA ATGTTCTTAGTGAGACTTGAATTCTTTGATCCTCTTATGGATGCAACTTCTCGTTTTTCTCAAATTGCTAAAGAAGCCGATATCAAATTCACTCCATTAGACTTTTGGGTAATTGCTTCCAACCGATCCCCTCGCTTTGTCGCAGCCATTCAAATGTCCCACCATTGCTTCATCCACTACAATGTCGATGATGATCACACTTCAAGAATTTCCCTTGAATCCTTCCATGACGCTCTCTTGGATGGTGGAGCTTCTTCTTCAATGACCATTCATCTTCTCCAAAACATAAACCAAATGATGCTTAGATTCGAATCTTCAAGTCATGTGCCACACGTGCGTCATGAATTGACATTGACACCGTCACAAGAAGAGGATCTTGGAGAAGTTGATTATGCAAAATGTTTCTCAATTGATTCAAGGGAATTAAGACGTGTTATAACAGAATTACCTATCTTCCATGAGGACTCAATATGTGTTACTGCAACCAGTTCACAAGTCAAATTCTCTATTGCTTCTGAAGCGATTATTCTTACCAAAGAGGTATTGTTCTAA ATGTTCTTAGTGAGACTTGAATTCTTTGATCCTCTTATGGATGCAACTTCTCGTTTTTCTCAAATTGCTAAAGAAGCCGATATCAAATTCACTCCATTAGACTTTTGGGTAATTGCTTCCAACCGATCCCCTCGCTTTGTCGCAGCCATTCAAATGTCCCACCATTGCTTCATCCACTACAATGTCGATGATGATCACACTTCAAGAATTTCCCTTGAATCCTTCCATGACGCTCTCTTGGATGGTGGAGCTTCTTCTTCAATGACCATTCATCTTCTCCAAAACATAAACCAAATGATGCTTAGATTCGAATCTTCAAGTCATGTGCCACACGTGCGTCATGAATTGACATTGACACCGTCACAAGAAGAGGATCTTGGAGAAGTTGATTATGCAAAATGTTTCTCAATTGATTCAAGGGAATTAAGACGTGTTATAACAGAATTACCTATCTTCCATGAGGACTCAATATGTGTTACTGCAACCAGTTCACAAGTCAAATTCTCTATTGCTTCTGAAGCGATTATTCTTACCAAAGAGGTATTGTTCTAA MFLVRLEFFDPLMDATSRFSQIAKEADIKFTPLDFWVIASNRSPRFVAAIQMSHHCFIHYNVDDDHTSRISLESFHDALLDGGASSSMTIHLLQNINQMMLRFESSSHVPHVRHELTLTPSQEEDLGEVDYAKCFSIDSRELRRVITELPIFHEDSICVTATSSQVKFSIASEAIILTKEVLF
BLAST of ClCG06G003940.1 vs. TrEMBL
Match: A0A0A0K902_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G020220 PE=4 SV=1) HSP 1 Score: 172.6 bits (436), Expect = 4.6e-40 Identity = 90/162 (55.56%), Postives = 123/162 (75.93%), Query Frame = 1
BLAST of ClCG06G003940.1 vs. TrEMBL
Match: A0A0A0K9W4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G002290 PE=4 SV=1) HSP 1 Score: 109.4 bits (272), Expect = 4.7e-21 Identity = 54/108 (50.00%), Postives = 78/108 (72.22%), Query Frame = 1
BLAST of ClCG06G003940.1 vs. TrEMBL
Match: A0A0A0LIE0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G155090 PE=4 SV=1) HSP 1 Score: 91.3 bits (225), Expect = 1.3e-15 Identity = 49/127 (38.58%), Postives = 78/127 (61.42%), Query Frame = 1
BLAST of ClCG06G003940.1 vs. TrEMBL
Match: A0A0A0KB76_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G002310 PE=4 SV=1) HSP 1 Score: 87.4 bits (215), Expect = 1.9e-14 Identity = 59/158 (37.34%), Postives = 84/158 (53.16%), Query Frame = 1
BLAST of ClCG06G003940.1 vs. TrEMBL
Match: A0A0A0K9W8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G002330 PE=4 SV=1) HSP 1 Score: 78.6 bits (192), Expect = 9.0e-12 Identity = 56/184 (30.43%), Postives = 94/184 (51.09%), Query Frame = 1
BLAST of ClCG06G003940.1 vs. NCBI nr
Match: gi|659128753|ref|XP_008464355.1| (PREDICTED: uncharacterized protein LOC103502263 [Cucumis melo]) HSP 1 Score: 291.2 bits (744), Expect = 1.3e-75 Identity = 146/180 (81.11%), Postives = 161/180 (89.44%), Query Frame = 1
BLAST of ClCG06G003940.1 vs. NCBI nr
Match: gi|659117591|ref|XP_008458682.1| (PREDICTED: proliferating cell nuclear antigen-like [Cucumis melo]) HSP 1 Score: 226.1 bits (575), Expect = 5.0e-56 Identity = 110/181 (60.77%), Postives = 145/181 (80.11%), Query Frame = 1
BLAST of ClCG06G003940.1 vs. NCBI nr
Match: gi|659128729|ref|XP_008464344.1| (PREDICTED: uncharacterized protein LOC103502250 [Cucumis melo]) HSP 1 Score: 194.1 bits (492), Expect = 2.1e-46 Identity = 106/186 (56.99%), Postives = 144/186 (77.42%), Query Frame = 1
BLAST of ClCG06G003940.1 vs. NCBI nr
Match: gi|700190704|gb|KGN45908.1| (hypothetical protein Csa_6G020220 [Cucumis sativus]) HSP 1 Score: 172.6 bits (436), Expect = 6.6e-40 Identity = 90/162 (55.56%), Postives = 123/162 (75.93%), Query Frame = 1
BLAST of ClCG06G003940.1 vs. NCBI nr
Match: gi|659116796|ref|XP_008458264.1| (PREDICTED: uncharacterized protein LOC103497732 [Cucumis melo]) HSP 1 Score: 113.2 bits (282), Expect = 4.7e-22 Identity = 76/186 (40.86%), Postives = 107/186 (57.53%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
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