ClCG06G003940 (gene) Watermelon (Charleston Gray)

NameClCG06G003940
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionProliferating cell nuclear antigen
LocationCG_Chr06 : 4548859 .. 4549625 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTCTTAGTGAGACTTGAATTCTTTGATCCTCTTATGGATGCAACTTCTCGTTTTTCTCAAATTGCTAAAGAAGCCGATATCAAATTCACTCCATTAGACTTTTGGGTAATTGCTTCCAACCGATCCCCTCGCTTTGTCGCAGCCATTCAAATGTCCCACCATTGCTTCATCCACTACAATGTCGATGATGATCACACTTCAAGAATTTCCCTTGAATCCTTCCATGACGCTCTCTTGGATGGTGGAGCTTCTTCTTCAATGACCATTCATCTTCTCCAAAACATAAACCAAATGATGCTTAGATTCGAATCTTCAAGTTAGTATATACCTATAAATCAATCTTGGATTGCTCCAACAATAATCTTGTTTCTCTCTTTTTGTTCCAAGAACACACAACTTTTTTTCTTTTTTTCTTTTTTTAATTTTTACTTTTTAGGTCATGTGCCACACGTGCGTCATGAATTGACATTGACACCGTCACAAGAAGAGGATCTTGGAGAAGTTGATTATGCAAAATGTTTCTCAATTGATTCAAGGGAATTAAGACGTGTTATAACAGAATTACCTATCTTCCATGAGGACTCAAGTAAAACATGGGACTCTTCTTTTCTTAATTTAATAATTATATGTCTATTTCAAAAAAAATTAAAGTTGATTATGCAAAATGTTTGTTTGTCATAGTATGTGTTACTGCAACCAGTTCACAAGTCAAATTCTCTATTGCTTCTGAAGCGATTATTCTTACCAAAGAGGTATTGTTCTAA

mRNA sequence

ATGTTCTTAGTGAGACTTGAATTCTTTGATCCTCTTATGGATGCAACTTCTCGTTTTTCTCAAATTGCTAAAGAAGCCGATATCAAATTCACTCCATTAGACTTTTGGGTAATTGCTTCCAACCGATCCCCTCGCTTTGTCGCAGCCATTCAAATGTCCCACCATTGCTTCATCCACTACAATGTCGATGATGATCACACTTCAAGAATTTCCCTTGAATCCTTCCATGACGCTCTCTTGGATGGTGGAGCTTCTTCTTCAATGACCATTCATCTTCTCCAAAACATAAACCAAATGATGCTTAGATTCGAATCTTCAAGTCATGTGCCACACGTGCGTCATGAATTGACATTGACACCGTCACAAGAAGAGGATCTTGGAGAAGTTGATTATGCAAAATGTTTCTCAATTGATTCAAGGGAATTAAGACGTGTTATAACAGAATTACCTATCTTCCATGAGGACTCAATATGTGTTACTGCAACCAGTTCACAAGTCAAATTCTCTATTGCTTCTGAAGCGATTATTCTTACCAAAGAGGTATTGTTCTAA

Coding sequence (CDS)

ATGTTCTTAGTGAGACTTGAATTCTTTGATCCTCTTATGGATGCAACTTCTCGTTTTTCTCAAATTGCTAAAGAAGCCGATATCAAATTCACTCCATTAGACTTTTGGGTAATTGCTTCCAACCGATCCCCTCGCTTTGTCGCAGCCATTCAAATGTCCCACCATTGCTTCATCCACTACAATGTCGATGATGATCACACTTCAAGAATTTCCCTTGAATCCTTCCATGACGCTCTCTTGGATGGTGGAGCTTCTTCTTCAATGACCATTCATCTTCTCCAAAACATAAACCAAATGATGCTTAGATTCGAATCTTCAAGTCATGTGCCACACGTGCGTCATGAATTGACATTGACACCGTCACAAGAAGAGGATCTTGGAGAAGTTGATTATGCAAAATGTTTCTCAATTGATTCAAGGGAATTAAGACGTGTTATAACAGAATTACCTATCTTCCATGAGGACTCAATATGTGTTACTGCAACCAGTTCACAAGTCAAATTCTCTATTGCTTCTGAAGCGATTATTCTTACCAAAGAGGTATTGTTCTAA

Protein sequence

MFLVRLEFFDPLMDATSRFSQIAKEADIKFTPLDFWVIASNRSPRFVAAIQMSHHCFIHYNVDDDHTSRISLESFHDALLDGGASSSMTIHLLQNINQMMLRFESSSHVPHVRHELTLTPSQEEDLGEVDYAKCFSIDSRELRRVITELPIFHEDSICVTATSSQVKFSIASEAIILTKEVLF
BLAST of ClCG06G003940 vs. TrEMBL
Match: A0A0A0K902_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G020220 PE=4 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 4.6e-40
Identity = 90/162 (55.56%), Postives = 123/162 (75.93%), Query Frame = 1

Query: 1   MFLVRLEFFDPLMDATSRFSQIA-KEADIKFTPLDFWVIASNRSPRFVAAIQMSHHCFIH 60
           MFLV+L  FDPL+DATS F+QI+  +AD+KFTP  F++I+S+RSPRF+A +Q+S   F  
Sbjct: 1   MFLVKLTNFDPLLDATSFFAQISFDDADVKFTPSKFFIISSHRSPRFIATLQLSPQWFTS 60

Query: 61  YNVDDDHTSRISLESFHDALLDGGASSSMTIHLLQNINQMMLRFES-SSHVPHVRHELTL 120
           ++VD DH+S++SLESFHDA+LDGG+ +SMTIHLL   NQ++LRF++ SS +  + HEL L
Sbjct: 61  FSVDHDHSSKVSLESFHDAILDGGSFASMTIHLLDKTNQIILRFDTPSSEIQPLHHELAL 120

Query: 121 TPSQEED--LG--EVDYAKCFSIDSRELRRVITELPIFHEDS 157
           +P Q ED  +G  E+D  K F + S+ LRR+I ELPIF  DS
Sbjct: 121 SPPQAEDNQIGQHELDEGKYFIVKSKALRRIIKELPIFQNDS 162

BLAST of ClCG06G003940 vs. TrEMBL
Match: A0A0A0K9W4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G002290 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 4.7e-21
Identity = 54/108 (50.00%), Postives = 78/108 (72.22%), Query Frame = 1

Query: 1   MFLVRLEFFDPLMDATSRFSQIAKE-ADIKFTPLDFWVIASNRSPRFVAAIQMSHHCFIH 60
           MFLV+L  F+PL+D+T   +  +   A +KFTP   ++I SNR P F+A +Q+S   F +
Sbjct: 1   MFLVKLTEFEPLLDSTYFLALYSNNNAHVKFTPGKLFLIVSNRFPNFIATLQLSPRWFTN 60

Query: 61  YNVDDDHTSRISLESFHDALLDGGASSSMTIHLLQNINQMMLRFESSS 108
           ++VD  H+S++SLESFHDA+LDGG  S+M+IHLL   NQM+LRF++ S
Sbjct: 61  FSVDHVHSSKVSLESFHDAMLDGGEFSTMSIHLLDKTNQMILRFDTPS 108

BLAST of ClCG06G003940 vs. TrEMBL
Match: A0A0A0LIE0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G155090 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.3e-15
Identity = 49/127 (38.58%), Postives = 78/127 (61.42%), Query Frame = 1

Query: 1   MFLVRLEFFDPLMDATSRFSQ-IAKEADIKFTPLDFWVIASNRSPRFVAAIQMSHHCFIH 60
           MF ++++  DP +DATS F++ I  E  +KF+P  F +IA  + P F A + M H  F+ 
Sbjct: 1   MFSIKVDNLDPFLDATSLFTEFINDEICLKFSPSTFSMIARYQCPTFFAMLFMPHPLFVE 60

Query: 61  YNVDDDHTSRISLESFHDALLDGGASSSMTIHLLQNINQMMLRFESSSHVPHVRHELTLT 120
           Y+VD +H SRISL  F +ALL+G + SSM+IHL +  N ++ +FE S  +     ++T +
Sbjct: 61  YSVDRNHISRISLRCFRNALLEGQSYSSMSIHLREPQNTILFKFEPSILITSRGSQITFS 120

Query: 121 PSQEEDL 127
               E++
Sbjct: 121 AVPREEI 127

BLAST of ClCG06G003940 vs. TrEMBL
Match: A0A0A0KB76_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G002310 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 1.9e-14
Identity = 59/158 (37.34%), Postives = 84/158 (53.16%), Query Frame = 1

Query: 1   MFLVRLEFFDPLMDATSRFSQIAKE-ADIKFTPLDFWVIASNRSPRFVAAIQMSHHCFIH 60
           MF ++++  DPL+DA S F+ I  +   +KF+   F +IA  + P F A + +    F  
Sbjct: 1   MFSIKIDKLDPLLDAISLFTDIVNDKICLKFSLSTFSIIARYQHPFFFAMLFIPEPLFAE 60

Query: 61  YNVDDDHTSRISLESFHDALLDGGASSSMTIHLLQNINQMMLRFESSSH--VPHVRHELT 120
           Y V  DH  R+SL S H AL  G   SS+ IHL +  N + L FE S H  VP  R    
Sbjct: 61  YFVGRDHILRVSLLSLHTALARGQTYSSLRIHLQEEQNIICLAFEPSRHSPVPMRRKMRF 120

Query: 121 LTPSQEEDLGEVDY-AKCFSIDSRELRRVITELPIFHE 155
             P ++   GE+D+ AK FSI+S   R +IT    ++E
Sbjct: 121 EVPMEDWSAGEIDFDAKSFSIESDLFRDIITTFYDYNE 158

BLAST of ClCG06G003940 vs. TrEMBL
Match: A0A0A0K9W8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G002330 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 9.0e-12
Identity = 56/184 (30.43%), Postives = 94/184 (51.09%), Query Frame = 1

Query: 1   MFLVRLEFFDPLMDATSRFSQIAKEADIKFTPLDFWVIASNRSPRFVAAIQMSHHCFIHY 60
           M   R+     L++ T   S + +E DI+ +PL   ++  N SP F+A +QM+H  F  Y
Sbjct: 3   MLKFRVNPLSGLLNPTPVLSHLGEEVDIRVSPLKLSLMLPNFSPSFIAGLQMTHEFFNLY 62

Query: 61  NVDDDHTSRISLESFHDAL----LDGGASSSMTIHLLQNINQMMLRFESSSHVPHVRHEL 120
             D  +  R SL  F+  +    L G +S   T+ + + +  + L FE+++     R  L
Sbjct: 63  ISDRTYQFRFSLRKFYTFMYRMELQGFSSMLFTVDM-KRLLSVYLTFENNN-AKRERRRL 122

Query: 121 TLTPSQEEDLGEVDYAKCFSIDSRELRRVITELPIFHEDSICVTATSSQVKFSIASEAII 180
            L     +  G+++Y    SIDSR+ RR+ +EL   +  S+ VT T+S+V F   ++ I 
Sbjct: 123 KLLAYDLDLDGDIEYTTFVSIDSRDFRRIASEL---NSRSVSVTFTNSRVNFFNKNKEIT 181

BLAST of ClCG06G003940 vs. NCBI nr
Match: gi|659128753|ref|XP_008464355.1| (PREDICTED: uncharacterized protein LOC103502263 [Cucumis melo])

HSP 1 Score: 291.2 bits (744), Expect = 1.3e-75
Identity = 146/180 (81.11%), Postives = 161/180 (89.44%), Query Frame = 1

Query: 1   MFLVRLEFFDPLMDATSRFSQIAKEADIKFTPLDFWVIASNRSPRFVAAIQMSHHCFIHY 60
           MFLVRL+ FDPL DATSR +QIA+EADIKFTPL F +IASNRSPRFVA +QM+HHCFI+Y
Sbjct: 3   MFLVRLKDFDPLFDATSRLAQIAREADIKFTPLFFSIIASNRSPRFVAYLQMTHHCFINY 62

Query: 61  NVDDDHTSRISLESFHDALLDGGASSSMTIHLLQNINQMMLRFESSSHVPHVRHELTLTP 120
            VD+DHTSRISLESFHDALLDGGAS SMTIHLL NI Q++LRFESSSH P V HEL+LTP
Sbjct: 63  KVDNDHTSRISLESFHDALLDGGASPSMTIHLLANIKQLILRFESSSHAPKVHHELSLTP 122

Query: 121 SQEEDLGEVDYAKCFSIDSRELRRVITELPIFHEDSICVTATSSQVKFSIASEAIILTKE 180
           SQEEDLGEVDYAK FSIDS++LRRVI  LPIFH DSICVTAT SQVKFSIAS+ I+LTKE
Sbjct: 123 SQEEDLGEVDYAKFFSIDSKDLRRVIRNLPIFHGDSICVTATGSQVKFSIASKEIVLTKE 182

BLAST of ClCG06G003940 vs. NCBI nr
Match: gi|659117591|ref|XP_008458682.1| (PREDICTED: proliferating cell nuclear antigen-like [Cucumis melo])

HSP 1 Score: 226.1 bits (575), Expect = 5.0e-56
Identity = 110/181 (60.77%), Postives = 145/181 (80.11%), Query Frame = 1

Query: 1   MFLVRLEFFDPLMDATSRFSQIAKEADIKFTPLDFWVIASNRSPRFVAAIQMSHHCFIHY 60
           MFLVRLE F+PL+DATS  +Q+AK+AD+KFTPL   +I SNRSP+FVA +Q+S   F ++
Sbjct: 1   MFLVRLEQFEPLIDATSLLAQVAKDADVKFTPLMLMIIVSNRSPQFVATLQLSRRLFTNF 60

Query: 61  NVDDDHTSRISLESFHDALLDGGASSSMTIHLLQNINQMMLRFESSSH-VPHVRHELTLT 120
           +VD + +S++SL+ FHDA+LDGG+ SSMTIHLL   NQM+LRFE+ SH VP + HEL L+
Sbjct: 61  SVDHNKSSKVSLQPFHDAMLDGGSFSSMTIHLLDTTNQMVLRFETPSHDVPPLHHELALS 120

Query: 121 PSQEEDLGEVDYAKCFSIDSRELRRVITELPIFHEDSICVTATSSQVKFSIASEAIILTK 180
           P Q E+LG+V+Y   F++ SRELRR+I ELP+FH+D++ VT T SQVKFSI S+ IILTK
Sbjct: 121 PPQAENLGQVEYGNFFTVTSRELRRIIKELPLFHQDTVSVTVTGSQVKFSIQSKEIILTK 180

BLAST of ClCG06G003940 vs. NCBI nr
Match: gi|659128729|ref|XP_008464344.1| (PREDICTED: uncharacterized protein LOC103502250 [Cucumis melo])

HSP 1 Score: 194.1 bits (492), Expect = 2.1e-46
Identity = 106/186 (56.99%), Postives = 144/186 (77.42%), Query Frame = 1

Query: 1   MFLVRLEFFDPLMDATSRFSQIAKE-ADIKFTPLDFWVIASNRSPRFVAAIQMSHHCFIH 60
           MFLV+L+ FDPL+DATS  +QI+ + AD+KFTP  F++IAS+RSPRF+A +Q+S   F  
Sbjct: 1   MFLVKLKNFDPLLDATSFLAQISFDNADLKFTPSKFFIIASHRSPRFIATLQLSPQWFTT 60

Query: 61  YNVDDDHTSRISLESFHDALLDGGASSSMTIHLLQNINQMMLRFES-SSHVPHVRHELTL 120
           ++VD+DH+S++SLESFHDA+LDGG+ +SMTIHLL   NQM+LRF++ SS +  + HELTL
Sbjct: 61  FSVDNDHSSKVSLESFHDAILDGGSFASMTIHLLDKTNQMILRFDTPSSEIQPLHHELTL 120

Query: 121 TPSQEED--LG--EVDYAKCFSIDSRELRRVITELPIFHEDS-ICVTATSSQVKFSIASE 180
           +P Q ED  +G  E+D  K F + S+ LRR+I +LPIF  DS I V  T+S+VKFSIAS+
Sbjct: 121 SPPQAEDNQIGQHELDERKYFIVKSKALRRIIKDLPIFQNDSIISVDVTNSRVKFSIASK 180

BLAST of ClCG06G003940 vs. NCBI nr
Match: gi|700190704|gb|KGN45908.1| (hypothetical protein Csa_6G020220 [Cucumis sativus])

HSP 1 Score: 172.6 bits (436), Expect = 6.6e-40
Identity = 90/162 (55.56%), Postives = 123/162 (75.93%), Query Frame = 1

Query: 1   MFLVRLEFFDPLMDATSRFSQIA-KEADIKFTPLDFWVIASNRSPRFVAAIQMSHHCFIH 60
           MFLV+L  FDPL+DATS F+QI+  +AD+KFTP  F++I+S+RSPRF+A +Q+S   F  
Sbjct: 1   MFLVKLTNFDPLLDATSFFAQISFDDADVKFTPSKFFIISSHRSPRFIATLQLSPQWFTS 60

Query: 61  YNVDDDHTSRISLESFHDALLDGGASSSMTIHLLQNINQMMLRFES-SSHVPHVRHELTL 120
           ++VD DH+S++SLESFHDA+LDGG+ +SMTIHLL   NQ++LRF++ SS +  + HEL L
Sbjct: 61  FSVDHDHSSKVSLESFHDAILDGGSFASMTIHLLDKTNQIILRFDTPSSEIQPLHHELAL 120

Query: 121 TPSQEED--LG--EVDYAKCFSIDSRELRRVITELPIFHEDS 157
           +P Q ED  +G  E+D  K F + S+ LRR+I ELPIF  DS
Sbjct: 121 SPPQAEDNQIGQHELDEGKYFIVKSKALRRIIKELPIFQNDS 162

BLAST of ClCG06G003940 vs. NCBI nr
Match: gi|659116796|ref|XP_008458264.1| (PREDICTED: uncharacterized protein LOC103497732 [Cucumis melo])

HSP 1 Score: 113.2 bits (282), Expect = 4.7e-22
Identity = 76/186 (40.86%), Postives = 107/186 (57.53%), Query Frame = 1

Query: 1   MFLVRLEFFDPLMDATSRFSQIAKEADIKFTPLDFWVIASNRSPRFVAAIQMSHHCFIHY 60
           +F V L  F PL DA + FS I  EAD+K +     +I ++RS  FVA + +    F  Y
Sbjct: 4   LFFVSLHNFAPLADAAALFSNIFYEADVKVSRTQLSMITADRSRWFVAVLHIWEPFFNDY 63

Query: 61  NVDDDHTSRISLESFHDALLDGGAS--SSMTIHLLQNINQMMLRFESSSHVPHVRHELTL 120
            +D D TSRISL +FH  +        SSM I + +  N + L F++S     +   + L
Sbjct: 64  YIDKDITSRISLPTFHCHMNRARKDHCSSMNIRMQKGHNYLFLEFKNSK--KDIYRRMFL 123

Query: 121 TPSQEEDL--GEVDYAKCFSIDSRELRRVITELPIFHED-SICVTATSSQVKFSIASEAI 180
           +PS+EEDL   ++D    FSI S + RR+ITE+     D  I VT T+SQVKFS++S+ I
Sbjct: 124 SPSREEDLTQTQIDNQNFFSIHSSDFRRIITEVSHLPNDLVIVVTVTNSQVKFSVSSKEI 183

Query: 181 ILTKEV 182
           ILT+EV
Sbjct: 184 ILTEEV 187

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0K902_CUCSA4.6e-4055.56Uncharacterized protein OS=Cucumis sativus GN=Csa_6G020220 PE=4 SV=1[more]
A0A0A0K9W4_CUCSA4.7e-2150.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G002290 PE=4 SV=1[more]
A0A0A0LIE0_CUCSA1.3e-1538.58Uncharacterized protein OS=Cucumis sativus GN=Csa_2G155090 PE=4 SV=1[more]
A0A0A0KB76_CUCSA1.9e-1437.34Uncharacterized protein OS=Cucumis sativus GN=Csa_6G002310 PE=4 SV=1[more]
A0A0A0K9W8_CUCSA9.0e-1230.43Uncharacterized protein OS=Cucumis sativus GN=Csa_6G002330 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|659128753|ref|XP_008464355.1|1.3e-7581.11PREDICTED: uncharacterized protein LOC103502263 [Cucumis melo][more]
gi|659117591|ref|XP_008458682.1|5.0e-5660.77PREDICTED: proliferating cell nuclear antigen-like [Cucumis melo][more]
gi|659128729|ref|XP_008464344.1|2.1e-4656.99PREDICTED: uncharacterized protein LOC103502250 [Cucumis melo][more]
gi|700190704|gb|KGN45908.1|6.6e-4055.56hypothetical protein Csa_6G020220 [Cucumis sativus][more]
gi|659116796|ref|XP_008458264.1|4.7e-2240.86PREDICTED: uncharacterized protein LOC103497732 [Cucumis melo][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG06G003940.1ClCG06G003940.1mRNA


Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3DG3DSA:3.70.10.10coord: 2..173
score: 8.0
NoneNo IPR availableunknownSSF55979DNA clampcoord: 1..109
score: 2.5

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
ClCG06G003940Cla001208Watermelon (97103) v1wcgwmB347
ClCG06G003940Cla97C06G113430Watermelon (97103) v2wcgwmbB274
The following gene(s) are paralogous to this gene:

None