ClCG05G020340.1 (mRNA) Watermelon (Charleston Gray)

Overview
NameClCG05G020340.1
TypemRNA
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionUnknown protein
LocationCG_Chr05 : 32507151 .. 32508359 (-)
Sequence length531
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTTCATGTGAGGCAGCGGTGGTAGCAATGAGCATGGCAAAAAGGTACACATGAATTCCACTTTCGGCGACGAGATTGCTACCTCTATTTGCTCTGCGATTTTGAGGGGTTTTTATATAATTACTGTTGAACTCGAACATGACGTCGGGATATTCAACATGAATTATCAGCAGCGAATCTCAGTTTCCGGATCTTAGGAAGCAGCTTAGGTAATGTTCAATCTGAAGACAAATTTACAAATTATTTCGATTGTTAAGTTTGTTACGGATGGTTCAATTTTAGGGCATTTGAAAGCGATTCGTCGGAGATCATCACGCTCTGCGAGGCGGAATATGTGGAGAAAATCCTCGAGGAAACCTTGAGGAAATTGCTTGTGCACAAGGTTAGTAGTGCTGGCCGTTTATGATTGATCGATTGATCGATGGATTCTACTGCTATTTGGTCATTTGCGACTGAATTTTACAGTTCGAATGATTAAATTTTGCAGCAATTGTTCTTGCTCCAGAAGCAGTGCAATTCCTCTGCAACTTCCGCGGAACTTTTACGCGTACGTAACCCTAACTTTCAACCTAATCCACAGTTTTCATTTTCAGTACTTCCAATTTTCAATCGGTGGAATGTAGAGAAAGAATCGTCGCGGTTCTGTGATTCAGCAGGTTAATCAGCCACTGCAATTGCCTTTGCTTTCTCCGGTGAGCTCTGAACATTTAAGAGCGACGTTCTCCCCCAATTTGTCTCCACTGGCAATCCGCTCCCTGATCGAGGCCGTTCCGAGTTCTTTCGACGAAAACCAACAGGCCTCTGCTTTTTCCGGCGAGCTCTGACCATTTAGGAGCAACGTTTCTCCCCAATTTGTCTCCACAAGCAACTCGTCCTGAGTTCCTTGAACGAAAACCGTGTCATCGGGTACGTGAATTCATTTTGGAATCAATAATGGATCGTCTCTGTTAACTTGATTCTTTCGTCGTTCCCTGACCGACCTCCTTCTCGTTGAGAAATTAGATCGGCTCACTCGCGACGTGAGGATGGCACGACAGCGTCGTCTTCCAATCTTATTCCCGAAGAAAATACGATCACTGAAAAATTCATCGACATTTCACAGCGAAGTGCCCTCTATCCCACCAATCCCTAGAAAACTCGTCGATTGTTCCCGACGGCGATAACAGCGGTCCTGGAAACCGGCGAACCCTCGGAGTTGCCGGGTAA

mRNA sequence

ATGGGTTCATGTGAGGCAGCGGTGGTAGCAATGAGCATGGCAAAAAGGGCATTTGAAAGCGATTCGTCGGAGATCATCACGCTCTGCGAGGCGGAATATGTGGAGAAAATCCTCGAGGAAACCTTGAGGAAATTGCTTGTGCACAAGCAATTGTTCTTGCTCCAGAAGCAGTGCAATTCCTCTGCAACTTCCGCGGAACTTTTACGCAGAAAGAATCGTCGCGGTTCTGTGATTCAGCAGGTTAATCAGCCACTGCAATTGCCTTTGCTTTCTCCGGTGAGCTCTGAACATTTAAGAGCGACGTTCTCCCCCAATTTGTCTCCACTGGCAATCCGCTCCCTGATCGAGGCCGTTCCGAGAGCAACGTTTCTCCCCAATTTGTCTCCACAAGCAACTCGTCCTGAGTTCCTTGAACGAAAACCGTGTCATCGGTGCCCTCTATCCCACCAATCCCTAGAAAACTCGTCGATTGTTCCCGACGGCGATAACAGCGGTCCTGGAAACCGGCGAACCCTCGGAGTTGCCGGGTAA

Coding sequence (CDS)

ATGGGTTCATGTGAGGCAGCGGTGGTAGCAATGAGCATGGCAAAAAGGGCATTTGAAAGCGATTCGTCGGAGATCATCACGCTCTGCGAGGCGGAATATGTGGAGAAAATCCTCGAGGAAACCTTGAGGAAATTGCTTGTGCACAAGCAATTGTTCTTGCTCCAGAAGCAGTGCAATTCCTCTGCAACTTCCGCGGAACTTTTACGCAGAAAGAATCGTCGCGGTTCTGTGATTCAGCAGGTTAATCAGCCACTGCAATTGCCTTTGCTTTCTCCGGTGAGCTCTGAACATTTAAGAGCGACGTTCTCCCCCAATTTGTCTCCACTGGCAATCCGCTCCCTGATCGAGGCCGTTCCGAGAGCAACGTTTCTCCCCAATTTGTCTCCACAAGCAACTCGTCCTGAGTTCCTTGAACGAAAACCGTGTCATCGGTGCCCTCTATCCCACCAATCCCTAGAAAACTCGTCGATTGTTCCCGACGGCGATAACAGCGGTCCTGGAAACCGGCGAACCCTCGGAGTTGCCGGGTAA

Protein sequence

MGSCEAAVVAMSMAKRAFESDSSEIITLCEAEYVEKILEETLRKLLVHKQLFLLQKQCNSSATSAELLRRKNRRGSVIQQVNQPLQLPLLSPVSSEHLRATFSPNLSPLAIRSLIEAVPRATFLPNLSPQATRPEFLERKPCHRCPLSHQSLENSSIVPDGDNSGPGNRRTLGVAG
Homology
[Close]
BLAST of ClCG05G020340.1 vs. TrEMBL
Match: A0A0A0L3R0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G642280 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 4.0e-25
Identity = 85/176 (48.30%), Postives = 95/176 (53.98%), Query Frame = 1 

Query: 1   MGSCEAAVVAMSMAKRAFESDSSEIITLCEAEYVEKILEETLRKLLVHKQLFLLQKQCNS 60
           MGSCEAAVVAMSMAKRA E                  + ETLRK             C  
Sbjct: 1   MGSCEAAVVAMSMAKRALEGG---------------FVGETLRKFA-----------CAH 60

Query: 61  SATSAELLRRKNRRGSVIQQVNQPLQLPLLSPVSSEHLRATFSPNLSPLAIRSLIEAVPR 120
           +   A    RKNRRG VIQQVNQPLQLPLLSP S++HLRAT   + SP+ +   +     
Sbjct: 61  AIVLAPAAARKNRRGFVIQQVNQPLQLPLLSPASAKHLRAT-KQSFSPICLHKKL----- 120

Query: 121 ATFLPNLSPQATRPEFLERKPCHRCPLSHQSLENSSIVPDGDNSGPGNRRTLGVAG 177
              +  L P               CPLSHQSLE SS VP GDNSGPGNRRTLGV+G
Sbjct: 121 ---VRRLKPYTLTSA--------DCPLSHQSLEISSSVP-GDNSGPGNRRTLGVSG 132

[Close]
BLAST of ClCG05G020340.1 vs. NCBI nr
Match: gi|700200089|gb|KGN55247.1| (hypothetical protein Csa_4G642280 [Cucumis sativus])

HSP 1 Score: 122.9 bits (307), Expect = 5.7e-25
Identity = 85/176 (48.30%), Postives = 95/176 (53.98%), Query Frame = 1 

Query: 1   MGSCEAAVVAMSMAKRAFESDSSEIITLCEAEYVEKILEETLRKLLVHKQLFLLQKQCNS 60
           MGSCEAAVVAMSMAKRA E                  + ETLRK             C  
Sbjct: 1   MGSCEAAVVAMSMAKRALEGG---------------FVGETLRKFA-----------CAH 60

Query: 61  SATSAELLRRKNRRGSVIQQVNQPLQLPLLSPVSSEHLRATFSPNLSPLAIRSLIEAVPR 120
           +   A    RKNRRG VIQQVNQPLQLPLLSP S++HLRAT   + SP+ +   +     
Sbjct: 61  AIVLAPAAARKNRRGFVIQQVNQPLQLPLLSPASAKHLRAT-KQSFSPICLHKKL----- 120

Query: 121 ATFLPNLSPQATRPEFLERKPCHRCPLSHQSLENSSIVPDGDNSGPGNRRTLGVAG 177
              +  L P               CPLSHQSLE SS VP GDNSGPGNRRTLGV+G
Sbjct: 121 ---VRRLKPYTLTSA--------DCPLSHQSLEISSSVP-GDNSGPGNRRTLGVSG 132

The following BLAST results are available for this feature:
BLAST of ClCG05G020340.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L3R0_CUCSA4.0e-2548.30Uncharacterized protein OS=Cucumis sativus GN=Csa_4G642280 PE=4 SV=1[more]
BLAST of ClCG05G020340.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700200089|gb|KGN55247.1|5.7e-2548.30hypothetical protein Csa_4G642280 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
ClCG05G020340ClCG05G020340gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
ClCG05G020340.1ClCG05G020340.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
ClCG05G020340.1.cds6ClCG05G020340.1.cds6CDS
ClCG05G020340.1.cds5ClCG05G020340.1.cds5CDS
ClCG05G020340.1.cds4ClCG05G020340.1.cds4CDS
ClCG05G020340.1.cds3ClCG05G020340.1.cds3CDS
ClCG05G020340.1.cds2ClCG05G020340.1.cds2CDS
ClCG05G020340.1.cds1ClCG05G020340.1.cds1CDS