ClCG05G020340 (gene) Watermelon (Charleston Gray)

Overview
NameClCG05G020340
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionUnknown protein
LocationCG_Chr05 : 32507151 .. 32508359 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTTCATGTGAGGCAGCGGTGGTAGCAATGAGCATGGCAAAAAGGTACACATGAATTCCACTTTCGGCGACGAGATTGCTACCTCTATTTGCTCTGCGATTTTGAGGGGTTTTTATATAATTACTGTTGAACTCGAACATGACGTCGGGATATTCAACATGAATTATCAGCAGCGAATCTCAGTTTCCGGATCTTAGGAAGCAGCTTAGGTAATGTTCAATCTGAAGACAAATTTACAAATTATTTCGATTGTTAAGTTTGTTACGGATGGTTCAATTTTAGGGCATTTGAAAGCGATTCGTCGGAGATCATCACGCTCTGCGAGGCGGAATATGTGGAGAAAATCCTCGAGGAAACCTTGAGGAAATTGCTTGTGCACAAGGTTAGTAGTGCTGGCCGTTTATGATTGATCGATTGATCGATGGATTCTACTGCTATTTGGTCATTTGCGACTGAATTTTACAGTTCGAATGATTAAATTTTGCAGCAATTGTTCTTGCTCCAGAAGCAGTGCAATTCCTCTGCAACTTCCGCGGAACTTTTACGCGTACGTAACCCTAACTTTCAACCTAATCCACAGTTTTCATTTTCAGTACTTCCAATTTTCAATCGGTGGAATGTAGAGAAAGAATCGTCGCGGTTCTGTGATTCAGCAGGTTAATCAGCCACTGCAATTGCCTTTGCTTTCTCCGGTGAGCTCTGAACATTTAAGAGCGACGTTCTCCCCCAATTTGTCTCCACTGGCAATCCGCTCCCTGATCGAGGCCGTTCCGAGTTCTTTCGACGAAAACCAACAGGCCTCTGCTTTTTCCGGCGAGCTCTGACCATTTAGGAGCAACGTTTCTCCCCAATTTGTCTCCACAAGCAACTCGTCCTGAGTTCCTTGAACGAAAACCGTGTCATCGGGTACGTGAATTCATTTTGGAATCAATAATGGATCGTCTCTGTTAACTTGATTCTTTCGTCGTTCCCTGACCGACCTCCTTCTCGTTGAGAAATTAGATCGGCTCACTCGCGACGTGAGGATGGCACGACAGCGTCGTCTTCCAATCTTATTCCCGAAGAAAATACGATCACTGAAAAATTCATCGACATTTCACAGCGAAGTGCCCTCTATCCCACCAATCCCTAGAAAACTCGTCGATTGTTCCCGACGGCGATAACAGCGGTCCTGGAAACCGGCGAACCCTCGGAGTTGCCGGGTAA

mRNA sequence

ATGGGTTCATGTGAGGCAGCGGTGGTAGCAATGAGCATGGCAAAAAGGGCATTTGAAAGCGATTCGTCGGAGATCATCACGCTCTGCGAGGCGGAATATGTGGAGAAAATCCTCGAGGAAACCTTGAGGAAATTGCTTGTGCACAAGCAATTGTTCTTGCTCCAGAAGCAGTGCAATTCCTCTGCAACTTCCGCGGAACTTTTACGCAGAAAGAATCGTCGCGGTTCTGTGATTCAGCAGGTTAATCAGCCACTGCAATTGCCTTTGCTTTCTCCGGTGAGCTCTGAACATTTAAGAGCGACGTTCTCCCCCAATTTGTCTCCACTGGCAATCCGCTCCCTGATCGAGGCCGTTCCGAGAGCAACGTTTCTCCCCAATTTGTCTCCACAAGCAACTCGTCCTGAGTTCCTTGAACGAAAACCGTGTCATCGGTGCCCTCTATCCCACCAATCCCTAGAAAACTCGTCGATTGTTCCCGACGGCGATAACAGCGGTCCTGGAAACCGGCGAACCCTCGGAGTTGCCGGGTAA

Coding sequence (CDS)

ATGGGTTCATGTGAGGCAGCGGTGGTAGCAATGAGCATGGCAAAAAGGGCATTTGAAAGCGATTCGTCGGAGATCATCACGCTCTGCGAGGCGGAATATGTGGAGAAAATCCTCGAGGAAACCTTGAGGAAATTGCTTGTGCACAAGCAATTGTTCTTGCTCCAGAAGCAGTGCAATTCCTCTGCAACTTCCGCGGAACTTTTACGCAGAAAGAATCGTCGCGGTTCTGTGATTCAGCAGGTTAATCAGCCACTGCAATTGCCTTTGCTTTCTCCGGTGAGCTCTGAACATTTAAGAGCGACGTTCTCCCCCAATTTGTCTCCACTGGCAATCCGCTCCCTGATCGAGGCCGTTCCGAGAGCAACGTTTCTCCCCAATTTGTCTCCACAAGCAACTCGTCCTGAGTTCCTTGAACGAAAACCGTGTCATCGGTGCCCTCTATCCCACCAATCCCTAGAAAACTCGTCGATTGTTCCCGACGGCGATAACAGCGGTCCTGGAAACCGGCGAACCCTCGGAGTTGCCGGGTAA

Protein sequence

MGSCEAAVVAMSMAKRAFESDSSEIITLCEAEYVEKILEETLRKLLVHKQLFLLQKQCNSSATSAELLRRKNRRGSVIQQVNQPLQLPLLSPVSSEHLRATFSPNLSPLAIRSLIEAVPRATFLPNLSPQATRPEFLERKPCHRCPLSHQSLENSSIVPDGDNSGPGNRRTLGVAG
Homology
[Close]
BLAST of ClCG05G020340 vs. TrEMBL
Match: A0A0A0L3R0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G642280 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 4.0e-25
Identity = 85/176 (48.30%), Postives = 95/176 (53.98%), Query Frame = 1 

Query: 1   MGSCEAAVVAMSMAKRAFESDSSEIITLCEAEYVEKILEETLRKLLVHKQLFLLQKQCNS 60
           MGSCEAAVVAMSMAKRA E                  + ETLRK             C  
Sbjct: 1   MGSCEAAVVAMSMAKRALEGG---------------FVGETLRKFA-----------CAH 60

Query: 61  SATSAELLRRKNRRGSVIQQVNQPLQLPLLSPVSSEHLRATFSPNLSPLAIRSLIEAVPR 120
           +   A    RKNRRG VIQQVNQPLQLPLLSP S++HLRAT   + SP+ +   +     
Sbjct: 61  AIVLAPAAARKNRRGFVIQQVNQPLQLPLLSPASAKHLRAT-KQSFSPICLHKKL----- 120

Query: 121 ATFLPNLSPQATRPEFLERKPCHRCPLSHQSLENSSIVPDGDNSGPGNRRTLGVAG 177
              +  L P               CPLSHQSLE SS VP GDNSGPGNRRTLGV+G
Sbjct: 121 ---VRRLKPYTLTSA--------DCPLSHQSLEISSSVP-GDNSGPGNRRTLGVSG 132

[Close]
BLAST of ClCG05G020340 vs. NCBI nr
Match: gi|700200089|gb|KGN55247.1| (hypothetical protein Csa_4G642280 [Cucumis sativus])

HSP 1 Score: 122.9 bits (307), Expect = 5.7e-25
Identity = 85/176 (48.30%), Postives = 95/176 (53.98%), Query Frame = 1 

Query: 1   MGSCEAAVVAMSMAKRAFESDSSEIITLCEAEYVEKILEETLRKLLVHKQLFLLQKQCNS 60
           MGSCEAAVVAMSMAKRA E                  + ETLRK             C  
Sbjct: 1   MGSCEAAVVAMSMAKRALEGG---------------FVGETLRKFA-----------CAH 60

Query: 61  SATSAELLRRKNRRGSVIQQVNQPLQLPLLSPVSSEHLRATFSPNLSPLAIRSLIEAVPR 120
           +   A    RKNRRG VIQQVNQPLQLPLLSP S++HLRAT   + SP+ +   +     
Sbjct: 61  AIVLAPAAARKNRRGFVIQQVNQPLQLPLLSPASAKHLRAT-KQSFSPICLHKKL----- 120

Query: 121 ATFLPNLSPQATRPEFLERKPCHRCPLSHQSLENSSIVPDGDNSGPGNRRTLGVAG 177
              +  L P               CPLSHQSLE SS VP GDNSGPGNRRTLGV+G
Sbjct: 121 ---VRRLKPYTLTSA--------DCPLSHQSLEISSSVP-GDNSGPGNRRTLGVSG 132

The following BLAST results are available for this feature:
BLAST of ClCG05G020340 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L3R0_CUCSA4.0e-2548.30Uncharacterized protein OS=Cucumis sativus GN=Csa_4G642280 PE=4 SV=1[more]
BLAST of ClCG05G020340 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700200089|gb|KGN55247.1|5.7e-2548.30hypothetical protein Csa_4G642280 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG05G020340.1ClCG05G020340.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
ClCG05G020340Csa4G642280Cucumber (Chinese Long) v2cuwcgB310
ClCG05G020340Cla020623Watermelon (97103) v1wcgwmB285
ClCG05G020340Cla97C05G102080Watermelon (97103) v2wcgwmbB229
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG05G020340Cucurbita maxima (Rimu)cmawcgB021
ClCG05G020340Cucurbita maxima (Rimu)cmawcgB126
ClCG05G020340Cucurbita maxima (Rimu)cmawcgB160
ClCG05G020340Cucurbita maxima (Rimu)cmawcgB411
ClCG05G020340Cucurbita maxima (Rimu)cmawcgB597
ClCG05G020340Cucurbita maxima (Rimu)cmawcgB702
ClCG05G020340Cucurbita maxima (Rimu)cmawcgB773
ClCG05G020340Cucurbita moschata (Rifu)cmowcgB015
ClCG05G020340Cucurbita moschata (Rifu)cmowcgB151
ClCG05G020340Cucurbita moschata (Rifu)cmowcgB412
ClCG05G020340Cucurbita moschata (Rifu)cmowcgB503
ClCG05G020340Cucurbita moschata (Rifu)cmowcgB597
ClCG05G020340Cucurbita moschata (Rifu)cmowcgB707
ClCG05G020340Cucurbita moschata (Rifu)cmowcgB774
ClCG05G020340Wild cucumber (PI 183967)cpiwcgB144
ClCG05G020340Wild cucumber (PI 183967)cpiwcgB327
ClCG05G020340Wild cucumber (PI 183967)cpiwcgB587
ClCG05G020340Cucumber (Chinese Long) v2cuwcgB140
ClCG05G020340Cucumber (Chinese Long) v2cuwcgB557
ClCG05G020340Melon (DHL92) v3.5.1mewcgB211
ClCG05G020340Melon (DHL92) v3.5.1mewcgB287
ClCG05G020340Melon (DHL92) v3.5.1mewcgB480
ClCG05G020340Watermelon (97103) v1wcgwmB273
ClCG05G020340Cucurbita pepo (Zucchini)cpewcgB113
ClCG05G020340Cucurbita pepo (Zucchini)cpewcgB443
ClCG05G020340Cucurbita pepo (Zucchini)cpewcgB509
ClCG05G020340Cucurbita pepo (Zucchini)cpewcgB700
ClCG05G020340Cucurbita pepo (Zucchini)cpewcgB740
ClCG05G020340Bottle gourd (USVL1VR-Ls)lsiwcgB243
ClCG05G020340Bottle gourd (USVL1VR-Ls)lsiwcgB287
ClCG05G020340Bottle gourd (USVL1VR-Ls)lsiwcgB431
ClCG05G020340Cucumber (Gy14) v2cgybwcgB131
ClCG05G020340Cucumber (Gy14) v2cgybwcgB290
ClCG05G020340Cucumber (Gy14) v2cgybwcgB432
ClCG05G020340Cucumber (Gy14) v2cgybwcgB517
ClCG05G020340Melon (DHL92) v3.6.1medwcgB278
ClCG05G020340Melon (DHL92) v3.6.1medwcgB204
ClCG05G020340Melon (DHL92) v3.6.1medwcgB474
ClCG05G020340Melon (DHL92) v3.6.1medwcgB536
ClCG05G020340Silver-seed gourdcarwcgB0175
ClCG05G020340Silver-seed gourdcarwcgB0314
ClCG05G020340Silver-seed gourdcarwcgB0399
ClCG05G020340Silver-seed gourdcarwcgB0748
ClCG05G020340Cucumber (Chinese Long) v3cucwcgB150
ClCG05G020340Cucumber (Chinese Long) v3cucwcgB326
ClCG05G020340Cucumber (Chinese Long) v3cucwcgB585
ClCG05G020340Watermelon (97103) v2wcgwmbB209
ClCG05G020340Watermelon (97103) v2wcgwmbB243
ClCG05G020340Wax gourdwcgwgoB452
ClCG05G020340Wax gourdwcgwgoB479
ClCG05G020340Watermelon (Charleston Gray)wcgwcgB166
ClCG05G020340Cucumber (Gy14) v1cgywcgB137
ClCG05G020340Cucumber (Gy14) v1cgywcgB398
ClCG05G020340Cucumber (Gy14) v1cgywcgB599
ClCG05G020340Cucumber (Gy14) v1cgywcgB672