ClCG05G011230.1 (mRNA) Watermelon (Charleston Gray)

Overview
NameClCG05G011230.1
TypemRNA
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionUnknown protein
LocationCG_Chr05 : 13241651 .. 13242666 (-)
Sequence length540
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATACTGGGGGCACTTCAAGTGTCTATGCGCCAACTATGTCAATCATTAGATACCTAACACATAGCTCATCTAGTACTTCTACGAAAGGCTTGTCCCTTGTGACAGAAGTACCATCGATGCAACTAGCAGTGGTGCACTGGTGAGCAAGATACCAATGGAGGCCAGACAACTCATCTCCACCATGGTAGAGAATGCCGAACAATTTGGGACACGAGCTCTCGACTGTTCCACGTCGACACAAGAGGTAAATGAACTTAGAGCTAAACGTGTTGAACTTACTACTCTTGTGAAACAAACTTTCTCTATTAAGGCATAACAATTTGAGGAGCTTGTAACTGAGGTAAACTACGCTAGAAACTAGCAAATTGGTCAGAAATACAATTATAACCGATGGAAAAATTAAGGACCATGCTAGTAGATCAACTTGGGTATGCCTTTGTAGGATATGGTTAACAGTTTGGCGAAGTCCACCATGTAGTTAAAGTTGAATCAGGAGACCTTCCAGCAAACAACCACTGCACATATGCAGAGCCTGGCGAATCAGGTGTCTTAATTAGCTACAACAATTAATAGATTAGACACTCAGTACGGGAAGCTTCCTTCCCAGCTGGTGCACAATGTTCGTAATGTTAGTGCTATCTCGACGGTCAGTTGTTTTGAGATCTTTGATATTCCTGCTAAGTCCGAGGTTGAGTGTGATGTAGTTTTGAGATCTTTGATACTGCTGCTAAGTCTATGGTTGAGCATGATGCAGAGGGTGTTTTTGAAGAAGAATATGCCAGCTCGCGAAGAAGACGTGGGGTAAGTTTTGATCCACCTTTGAATTTGAATTCTTATTTACCTATTGCTTCTTAGCAGGTTGGCTATTGCTAAGGGAGTTGTGCATAAGGAGGAGGTGCATTCTATATAGTCTTCTGGTGACTCTGGTGACACGAGCCCTATTAGAAAGGGCAAGAAAATTTGGGTTGTGATTCTTGAAAAGGAAAAGAAAGAAGAGAGTGACCATCAATAG

mRNA sequence

ATGAATACTGGGGGCACTTCAAGTGTCTATGCGCCAACTATAAGTACCATCGATGCAACTAGCAGTGGTGCACTGGTGAGCAAGATACCAATGGAGGCCAGACAACTCATCTCCACCATGGTAGAGAATGCCGAACAATTTGGGACACGAGCTCTCGACTGTTCCACGTCGACACAAGAGTTAAAGTTGAATCAGGAGACCTTCCAGCAAACAACCACTGCACATATGCAGAGCCTGGCGAATCAGTACGGGAAGCTTCCTTCCCAGCTGGTGCACAATGTTCGTAATGTTAGTGCTATCTCGACGGTCAGTTGTTTTGAGATCTTTGATATTCCTGCTAAGTCCGAGATCTTTGATACTGCTGCTAAGTCTATGGTTGAGCATGATGCAGAGGGTGTTTTTGAAGAAGAATATGCCAGCTCGCGAAGAAGACGTGGGTCTTCTGGTGACTCTGGTGACACGAGCCCTATTAGAAAGGGCAAGAAAATTTGGGTTGTGATTCTTGAAAAGGAAAAGAAAGAAGAGAGTGACCATCAATAG

Coding sequence (CDS)

ATGAATACTGGGGGCACTTCAAGTGTCTATGCGCCAACTATAAGTACCATCGATGCAACTAGCAGTGGTGCACTGGTGAGCAAGATACCAATGGAGGCCAGACAACTCATCTCCACCATGGTAGAGAATGCCGAACAATTTGGGACACGAGCTCTCGACTGTTCCACGTCGACACAAGAGTTAAAGTTGAATCAGGAGACCTTCCAGCAAACAACCACTGCACATATGCAGAGCCTGGCGAATCAGTACGGGAAGCTTCCTTCCCAGCTGGTGCACAATGTTCGTAATGTTAGTGCTATCTCGACGGTCAGTTGTTTTGAGATCTTTGATATTCCTGCTAAGTCCGAGATCTTTGATACTGCTGCTAAGTCTATGGTTGAGCATGATGCAGAGGGTGTTTTTGAAGAAGAATATGCCAGCTCGCGAAGAAGACGTGGGTCTTCTGGTGACTCTGGTGACACGAGCCCTATTAGAAAGGGCAAGAAAATTTGGGTTGTGATTCTTGAAAAGGAAAAGAAAGAAGAGAGTGACCATCAATAG

Protein sequence

MNTGGTSSVYAPTISTIDATSSGALVSKIPMEARQLISTMVENAEQFGTRALDCSTSTQELKLNQETFQQTTTAHMQSLANQYGKLPSQLVHNVRNVSAISTVSCFEIFDIPAKSEIFDTAAKSMVEHDAEGVFEEEYASSRRRRGSSGDSGDTSPIRKGKKIWVVILEKEKKEESDHQ
Homology
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BLAST of ClCG05G011230.1 vs. NCBI nr
Match: gi|985429830|ref|XP_015385048.1| (PREDICTED: uncharacterized protein LOC107176724 [Citrus sinensis])

HSP 1 Score: 59.3 bits (142), Expect = 7.9e-06
Identity = 41/102 (40.20%), Postives = 54/102 (52.94%), Query Frame = 1 

Query: 15  STIDATSSGALVSKIPMEARQLISTMVENAEQFGTRALDCSTSTQELKLNQETFQQTTTA 74
           S IDA S G LV+K P +AR+LIS M  NA+QFG+R           K+N+      TTA
Sbjct: 200 SMIDAASGGVLVNKTPTQARELISNMAANAQQFGSR-----QDLTSRKVNEVNISFATTA 259

Query: 75  HMQSLANQ---------------YGKLPSQL-VHNVRNVSAI 101
            +Q+L NQ                G+LPSQ  V+  +NVSA+
Sbjct: 260 SIQNLENQMSQLATTVSRLESQVLGRLPSQSEVNPKQNVSAV 296

The following BLAST results are available for this feature:
BLAST of ClCG05G011230.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|985429830|ref|XP_015385048.1|7.9e-0640.20PREDICTED: uncharacterized protein LOC107176724 [Citrus sinensis][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
ClCG05G011230ClCG05G011230gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
ClCG05G011230.1ClCG05G011230.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
ClCG05G011230.1.cds6ClCG05G011230.1.cds6CDS
ClCG05G011230.1.cds5ClCG05G011230.1.cds5CDS
ClCG05G011230.1.cds4ClCG05G011230.1.cds4CDS
ClCG05G011230.1.cds3ClCG05G011230.1.cds3CDS
ClCG05G011230.1.cds2ClCG05G011230.1.cds2CDS
ClCG05G011230.1.cds1ClCG05G011230.1.cds1CDS