ClCG05G011230 (gene) Watermelon (Charleston Gray)

NameClCG05G011230
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionUnknown protein
LocationCG_Chr05 : 13241651 .. 13242666 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATACTGGGGGCACTTCAAGTGTCTATGCGCCAACTATGTCAATCATTAGATACCTAACACATAGCTCATCTAGTACTTCTACGAAAGGCTTGTCCCTTGTGACAGAAGTACCATCGATGCAACTAGCAGTGGTGCACTGGTGAGCAAGATACCAATGGAGGCCAGACAACTCATCTCCACCATGGTAGAGAATGCCGAACAATTTGGGACACGAGCTCTCGACTGTTCCACGTCGACACAAGAGGTAAATGAACTTAGAGCTAAACGTGTTGAACTTACTACTCTTGTGAAACAAACTTTCTCTATTAAGGCATAACAATTTGAGGAGCTTGTAACTGAGGTAAACTACGCTAGAAACTAGCAAATTGGTCAGAAATACAATTATAACCGATGGAAAAATTAAGGACCATGCTAGTAGATCAACTTGGGTATGCCTTTGTAGGATATGGTTAACAGTTTGGCGAAGTCCACCATGTAGTTAAAGTTGAATCAGGAGACCTTCCAGCAAACAACCACTGCACATATGCAGAGCCTGGCGAATCAGGTGTCTTAATTAGCTACAACAATTAATAGATTAGACACTCAGTACGGGAAGCTTCCTTCCCAGCTGGTGCACAATGTTCGTAATGTTAGTGCTATCTCGACGGTCAGTTGTTTTGAGATCTTTGATATTCCTGCTAAGTCCGAGGTTGAGTGTGATGTAGTTTTGAGATCTTTGATACTGCTGCTAAGTCTATGGTTGAGCATGATGCAGAGGGTGTTTTTGAAGAAGAATATGCCAGCTCGCGAAGAAGACGTGGGGTAAGTTTTGATCCACCTTTGAATTTGAATTCTTATTTACCTATTGCTTCTTAGCAGGTTGGCTATTGCTAAGGGAGTTGTGCATAAGGAGGAGGTGCATTCTATATAGTCTTCTGGTGACTCTGGTGACACGAGCCCTATTAGAAAGGGCAAGAAAATTTGGGTTGTGATTCTTGAAAAGGAAAAGAAAGAAGAGAGTGACCATCAATAG

mRNA sequence

ATGAATACTGGGGGCACTTCAAGTGTCTATGCGCCAACTATAAGTACCATCGATGCAACTAGCAGTGGTGCACTGGTGAGCAAGATACCAATGGAGGCCAGACAACTCATCTCCACCATGGTAGAGAATGCCGAACAATTTGGGACACGAGCTCTCGACTGTTCCACGTCGACACAAGAGTTAAAGTTGAATCAGGAGACCTTCCAGCAAACAACCACTGCACATATGCAGAGCCTGGCGAATCAGTACGGGAAGCTTCCTTCCCAGCTGGTGCACAATGTTCGTAATGTTAGTGCTATCTCGACGGTCAGTTGTTTTGAGATCTTTGATATTCCTGCTAAGTCCGAGATCTTTGATACTGCTGCTAAGTCTATGGTTGAGCATGATGCAGAGGGTGTTTTTGAAGAAGAATATGCCAGCTCGCGAAGAAGACGTGGGTCTTCTGGTGACTCTGGTGACACGAGCCCTATTAGAAAGGGCAAGAAAATTTGGGTTGTGATTCTTGAAAAGGAAAAGAAAGAAGAGAGTGACCATCAATAG

Coding sequence (CDS)

ATGAATACTGGGGGCACTTCAAGTGTCTATGCGCCAACTATAAGTACCATCGATGCAACTAGCAGTGGTGCACTGGTGAGCAAGATACCAATGGAGGCCAGACAACTCATCTCCACCATGGTAGAGAATGCCGAACAATTTGGGACACGAGCTCTCGACTGTTCCACGTCGACACAAGAGTTAAAGTTGAATCAGGAGACCTTCCAGCAAACAACCACTGCACATATGCAGAGCCTGGCGAATCAGTACGGGAAGCTTCCTTCCCAGCTGGTGCACAATGTTCGTAATGTTAGTGCTATCTCGACGGTCAGTTGTTTTGAGATCTTTGATATTCCTGCTAAGTCCGAGATCTTTGATACTGCTGCTAAGTCTATGGTTGAGCATGATGCAGAGGGTGTTTTTGAAGAAGAATATGCCAGCTCGCGAAGAAGACGTGGGTCTTCTGGTGACTCTGGTGACACGAGCCCTATTAGAAAGGGCAAGAAAATTTGGGTTGTGATTCTTGAAAAGGAAAAGAAAGAAGAGAGTGACCATCAATAG

Protein sequence

MNTGGTSSVYAPTISTIDATSSGALVSKIPMEARQLISTMVENAEQFGTRALDCSTSTQELKLNQETFQQTTTAHMQSLANQYGKLPSQLVHNVRNVSAISTVSCFEIFDIPAKSEIFDTAAKSMVEHDAEGVFEEEYASSRRRRGSSGDSGDTSPIRKGKKIWVVILEKEKKEESDHQ
BLAST of ClCG05G011230 vs. NCBI nr
Match: gi|985429830|ref|XP_015385048.1| (PREDICTED: uncharacterized protein LOC107176724 [Citrus sinensis])

HSP 1 Score: 59.3 bits (142), Expect = 7.9e-06
Identity = 41/102 (40.20%), Postives = 54/102 (52.94%), Query Frame = 1

Query: 15  STIDATSSGALVSKIPMEARQLISTMVENAEQFGTRALDCSTSTQELKLNQETFQQTTTA 74
           S IDA S G LV+K P +AR+LIS M  NA+QFG+R           K+N+      TTA
Sbjct: 200 SMIDAASGGVLVNKTPTQARELISNMAANAQQFGSR-----QDLTSRKVNEVNISFATTA 259

Query: 75  HMQSLANQ---------------YGKLPSQL-VHNVRNVSAI 101
            +Q+L NQ                G+LPSQ  V+  +NVSA+
Sbjct: 260 SIQNLENQMSQLATTVSRLESQVLGRLPSQSEVNPKQNVSAV 296

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
gi|985429830|ref|XP_015385048.1|7.9e-0640.20PREDICTED: uncharacterized protein LOC107176724 [Citrus sinensis][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG05G011230.1ClCG05G011230.1mRNA


The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None