ClCG05G008300.1 (mRNA) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG05G008300.1
Type	mRNA
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Proline--tRNA ligase
Location	CG_Chr05 : 8979805 .. 8984243 (+)
Sequence length	2764

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACAAAGGCAACATGTATGGCAGACATCATGGGCAGTTAGTACGCGTTTTGTTGGAGGAATTATTATGACTCATGGAGATGATGGAGGTTTAATGCTTCCACCAAAGCTTGCTCCAACACAGGTATTGATATGAATTTACAATTTGTAATATGAACAGTATTTCTATCTGTTGAATATTCAGCATATATTGACTAGTTAGCTGCCAATAGAAATTCATGTGGACTTCTTTTTTTTTATTTTATTTATCTATATAAATATATATATATATATATATATATATATATATATATATATATATATATATATATGATTTCGGTATCTGTTATGNTTCTTTTTTTTTTTTTTTTTTATCTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATGATTTCGGTATCTGTTATGGGTATTTTCACAACTTGGAATCTAGTTTGCGGAAAAGAAAATATTTCCGCAGTGTAGGTTGGTTGGCTGGCATTTTTATTTAAGGATGTATATATTGATCATTGATAGTTTTGAATGTTAAATCCCCTTTTTAGCAAAATGATTTTCGCTTAGATATTTTCTTCCTCCCTCTTTGCATTTGTTGCTATTAACTTGAAATCAAATATATGTAACTAGGGTTTGATTGTAGGGTGTTCCTTTGAGGATTGAGATTGGGCCTAAGGATGTTGCAAGTCAAAGTGTGGGCATATCTAGGAGAGACTTTCCTGCAAAGCAAGGGAAAGTTTTTTTGAATATCCACGGAACCTTCTGTTTTAGAAGCTTATGTACAAGAGACATTGGATGAGATCCTGTCATCTCATCTTCACCAGGCAAAAACTTTTCGGGACAGGTACTTCCTTATTTTCTTATGTTAGGGATGTTATTTAATAAATATGTGAATCTACATTTGGGTACATTACATTTATTATTTTAGAATTGAAGCAATTGAATGTTGAATAGCACACTTCTTGCAAATTATAGTGCAGTTTTAGATTCTCTGCAATTAGAATGTATTTGTAATTAGAATGTATTTGTAAATACATTCTGTTGAATTGTGAGCTTGAAGAAAATTGTTCCTATCTTCACCCTCATTTTCTTCCTGTCCCCGCACCTTTGCTTACCCCATCGAGTTTATTTTCCCTCTCTCTCTTTACCAGATTCATGCACAAAAACATTCTCTAAATGTTTCATTATATCCTTAAAGGAAAGAAAGGATGGGAATGACTGGTGTGCTTCCCAGTTCTCATTTCATCAGTTTCCGTGGTAGTGATATTCTTGATCAAATTTTGAAGTTGTAAATAGTGTCTTAGTGTGCATTCTGTGCATTTTTTTTCATTTAAAAGAAATAAAAATAGTGGTTAGTCTGACAGTATGGTTAAATTTGTCTAACACTGGATCAGTTCTAAAGCTGATGTGGGACTGAACTATTTTTTAACACTCTTGATAATGATTTTATCTTAAAATATGAAAATCCTGCTAGGGGTCCTTGGTCAGCTAGATAGGCTTAATTTCATTTATTGGGATTTGTTTATAAGTCTTCGATTTTTATGTAGCCCATTGGTCAGCGAGGTTGGCTTAATTTTATTTATTAGGATTTGTTTAAAGTCTTTGATTTAAATGTTTGCGCGTAATTGTTTGCATCTGTATGCTCTTGGACATTTTCAGTGACAAAGATGAATTGAGAGTTAAAGAAGAAACGGAAGCAACATTAGGTGCTTTACGGAACAAGAGGCTAAAACATGTCTGATGACTGGTAACCCTGCTGAGGAAGTTGCCATTTTTGCGAAGTCTTACTGAGATATAATTTCAAGGCACGACTTAAAACCTCCAAGTCTTGTTCATTTTGGCCGTTTAATCACGTTTGCACAATATCTTAAAGTCAAAGGTCATGTTAAATATTCCTTGAAGAGGGAGCCTTCTAAATCAGTTCTTCTAAGGCAAAAGGCTCTAGCTAGTTGGTTGGCCTTGGCATTTATCTTTTAAAGTTTGACGTGTTTTTGTTCTCTGCCTGCCTAATTATTTTGCTTGGTGGCTCAATCCTTCATTTTTGGAGCACTATCTAAGTGATCCATTTATTTATGAACTAAATGGATTAACAATCTTGATAAAGCGGCACTTAGTTTTTGTCTTTGTTTCACGTTTCATAACATGAGCTTGTTGTTTCATTGTTACGAACTATGATGTTGGTCTTGTGAACTACGTGACGTAGTATTATGTTGAATATTTAACCCCTCCGCAATTCTGTGATTTTGTTGGTACAAGGAAACAATTTTAGCATTAGGATAAAACAGTTATTTGTTTGTATTCTCACTTGAATTTGGCACAAATGTAATGTAGCACCTAGAAATTTTGGGTTGAAATGTATTGAGTGGACATTGGCTCACTTGAACGAACACAAGAAAATACAGATAATACAAGAACATGAACCTTAACTTCATAATCCAACATGACCATTTAAAGCAATATGATACGGCTTCAAGCTTTAAATTATGCACCGTACTTCAGGTCTTTACCAGGTGAAACTCATAGAGTGAAACTTCAGATTATCTCCATAAGCAGTTGAACAAATTTTTGCTACGTCATGCCGCATCCCGGTTGGGCCGCTGACTAAAACTCCAATATCCGTTCCTTTGCAGTCGAACAGAATTTCTGCATTACAAAACATGTTACCATATATCATTGATGTTGTTTGATATATATGTGTGTGTGCGGCGCTTTTGGTTGATACCAAGGCAGGAAAACTTACTCTCGAGATCAGGCCTACCCCCATAATGGATGTTGGTTGCTTGAACAAGGGATTGGTAGGGAAGGCTCTCGAGCTCACTATCACCTCCGAAGATCCATGACCCAGGTGATGCTTTTGGTGATTGAAAATTGTGAATTTGTATTTGTTTGCCATGTGAAGCATTTGTTTTCCTTTGCCACAGAAAGACAAAGCTAGAAGATATGCAAATACAAGCAAATGCTAAGAACATGTCCCAAAGAACCTTAAAGGTGTAATTGTAAACGGCATCCCCATTTCGTTCAATTGGGTAAATGTAGTAGCGAGTGATGATGCCTAAAAGAATCAAGAACATCACAAACGAAGATGAGATAATTGCGGCAAGTAGCAGCCAATTGTTTGCTCCAAGGGCCTCCGACACTGGTGAGTCTAATGGATTTGGCTTAAACCATATTGTATTTATGAGATTTTCAGAATTTGTTTGAGGTTGTTCTTTCTCTCTGGTGATATAAGCTTCAATCTGTAATGGTACATTTGAAATTTCTGTTTGTGTGCTAGATACTGGAAGCAAGAGATCCAGCATAGTGAGATCAATGGAATTCTTGAAGGCGCAGACGAGGCGAATTTGCGGAACATGGCAGTTCGGTTTTGTGCTTCGAACAATCATTATCTCTCTGATTATTGAAATGAAGGGAGTAATTCCACTTCCTCCACTTATCAGCAGCAGAGATTCATGCCTTCAAAAGAGAAAACATGTATCAAATTTAAGCAATTAAACTCCAGTAATTCAAAGCTATTTTGGCTGTAGGAAATCACCTTAAAAAGTGAGTAGAAGCAGGGCCATATGGACCTTCAACAGAAACTTGAAGGTGATCCAGAGAAGAAGAAAGTTGTTGGTGAAGTTTGGAAGTCCAACTTCCCCCTGCTTTGATAACAACACTCACTGTATCAGGCTCCAATTTGCAGTTAGAAGTGACTGTAAATGGATGCCACTGCAGTTTGGAAATGCTTGGCACATTTATGAACATCACACTTGTAGGATTATAGCATAGTTCTGATCAGAAAAAGGGTAAATTCCAATCAAATATTAGGCAAAAGACAAAAACAATAGAAAGAGTCTCAATGATCAGCTCTTGAAGAAACTAGACCTGGACTTTTCAAGAAATTTAGTTCAACAGCACCACAAGGAAGATGGCGAGCTGAAACCAAGCTTACTCGCCGTTGCGATTGTAAGAATCGTAAGTTTCGATCGATAGCCCAGAGAAAGATGCCAGGAAGAATCAAGCATACATATGCTGCTCCCACATGGATTAGATAAAAGATTATATACAGAATGTAGAAATGGTGACTGTAATAGAAAACTTCAAACATTTTTCGACGAATCGTCTGAAAGCTTGTAACCCAGATAACTGTTGCAAATACCATAGCAATCACTCCAGCAACATTTGATACATAGTCTTCACTCCATTGTATCAACTGCTCAAAGATGCACATTCAATTAGTAATGGTTCAGGAGCAACACGTGAAGCAATATACTAATAGAAAAATAACATGGTTCTTGCTTTGAAGTTTGAATTTTGTTGTTGTAGCCAAGAATCATCTTCTTTCCTTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTTTTTGTTAGAACATGAGTTGTTTTAAGCACAATTGAA

mRNA sequence

ATGGACAAAGGCAACATGTATGGCAGACATCATGGGCAGTTAGTACGCGTTTTGTTGGAGGAATTATTATGACTCATGGAGATGATGGAGGTTTAATGCTTCCACCAAAGCTTGCTCCAACACAGGGTGTTCCTTTGAGGATTGAGATTGGGCCTAAGGATGTTGCAAGTCAAAGTGTGGGCATATCTAGGAGAGACTTTCCTGCAAAGCAAGGGAAAACATTGGATGAGATCCTGTCATCTCATCTTCACCAGGCAAAAACTTTTCGGGACAGTGACAAAGATGAATTGAGAGTTAAAGAAGAAACGGAAGCAACATTAGGTGCTTTACGGAACAAGAGGCTAAAACATGTCTGATGACTGGTAACCCTGCTGAGGAAGTTGCCATTTTTGCGAAGTCTTACTGAGATATAATTTCAAGGCACGACTTAAAACCTCCAAGTCTTGTTCATTTTGGCCGTTTAATCACGTTTGCACAATATCTTAAAGTCAAAGGTCATGTTAAATATTCCTTGAAGAGGGAGCCTTCTAAATCAGTTCTTCTAAGGCAAAAGGCTCTAGCTAGTTGGTTGGCCTTGGCATTTATCTTTTAAAGTTTGACGTGTTTTTGTTCTCTGCCTGCCTAATTATTTTGCTTGGTGGCTCAATCCTTCATTTTTGGAGCACTATCTAAGTGATCCATTTATTTATGAACTAAATGGATTAACAATCTTGATAAAGCGGCACTTAGTTTTTGTCTTTGTTTCACGTTTCATAACATGAGCTTGTTGTTTCATTGTTACGAACTATGATGTTGGTCTTGTGAACTACGTGACGTAGTATTATGTTGAATATTTAACCCCTCCGCAATTCTGTGATTTTGTTGGTACAAGGAAACAATTTTAGCATTAGGATAAAACAGTTATTTGTTTGTATTCTCACTTGAATTTGGCACAAATGTAATGTAGCACCTAGAAATTTTGGGTTGAAATGTATTGAGTGGACATTGGCTCACTTGAACGAACACAAGAAAATACAGATAATACAAGAACATGAACCTTAACTTCATAATCCAACATGACCATTTAAAGCAATATGATACGGCTTCAAGCTTTAAATTATGCACCGTACTTCAGGTCTTTACCAGGTGAAACTCATAGAGTGAAACTTCAGATTATCTCCATAAGCAGTTGAACAAATTTTTGCTACGTCATGCCGCATCCCGGTTGGGCCGCTGACTAAAACTCCAATATCCGTTCCTTTGCAGTCGAACAGAATTTCTGCATTACAAAACATGTTACCATATATCATTGATGTTGTTTGATATATATGTGTGTGTGCGGCGCTTTTGGTTGATACCAAGGCAGGAAAACTTACTCTCGAGATCAGGCCTACCCCCATAATGGATGTTGGTTGCTTGAACAAGGGATTGGTAGGGAAGGCTCTCGAGCTCACTATCACCTCCGAAGATCCATGACCCAGAAAGACAAAGCTAGAAGATATGCAAATACAAGCAAATGCTAAGAACATGTCCCAAAGAACCTTAAAGGTGTAATTGTAAACGGCATCCCCATTTCGTTCAATTGGGTAAATGTAGTAGCGAGTGATGATGCCTAAAAGAATCAAGAACATCACAAACGAAGATGAGATAATTGCGGCAAGTAGCAGCCAATTGTTTGCTCCAAGGGCCTCCGACACTGATACTGGAAGCAAGAGATCCAGCATAGTGAGATCAATGGAATTCTTGAAGGCGCAGACGAGGCGAATTTGCGGAACATGGCAGTTCGGTTTTGTGCTTCGAACAATCATTATCTCTCTGATTATTGAAATGAAGGGAGTAATTCCACTTCCTCCACTTATCAGCAGCAGAGATTCATGCCTTCAAAAGAGAAAACATGTATCAAATTTAAGCAATTAAACTCCAGTAATTCAAAGCTATTTTGGCTGTAGGAAATCACCTTAAAAAGTGAGTAGAAGCAGGGCCATATGGACCTTCAACAGAAACTTGAAGGTGATCCAGAGAAGAAGAAAGTTGTTGGTGAAGTTTGGAAGTCCAACTTCCCCCTGCTTTGATAACAACACTCACTGTATCAGGCTCCAATTTGCAGTTAGAAGTGACTGTAAATGGATGCCACTGCAGTTTGGAAATGCTTGGCACATTTATGAACATCACACTTGTAGGATTATAGCATAGTTCTGATCAGAAAAAGGGTAAATTCCAATCAAATATTAGGCAAAAGACAAAAACAATAGAAAGAGTCTCAATGATCAGCTCTTGAAGAAACTAGACCTGGACTTTTCAAGAAATTTAGTTCAACAGCACCACAAGGAAGATGGCGAGCTGAAACCAAGCTTACTCGCCGTTGCGATTGTAAGAATCGTAAGTTTCGATCGATAGCCCAGAGAAAGATGCCAGGAAGAATCAAGCATACATATGCTGCTCCCACATGGATTAGATAAAAGATTATATACAGAATGTAGAAATGGTGACTGTAATAGAAAACTTCAAACATTTTTCGACGAATCGTCTGAAAGCTTGTAACCCAGATAACTGTTGCAAATACCATAGCAATCACTCCAGCAACATTTGATACATAGTCTTCACTCCATTGTATCAACTGCTCAAAGATGCACATTCAATTAGTAATGGTTCAGGAGCAACACGTGAAGCAATATACTAATAGAAAAATAACATGGTTCTTGCTTTATTATTATTATTATTATTATTATTATTATTATTATTATTATTTTTTGTTAGAACATGAGTTGTTTTAAGCACAATTGAA

Coding sequence (CDS)

ATGACTCATGGAGATGATGGAGGTTTAATGCTTCCACCAAAGCTTGCTCCAACACAGGGTGTTCCTTTGAGGATTGAGATTGGGCCTAAGGATGTTGCAAGTCAAAGTGTGGGCATATCTAGGAGAGACTTTCCTGCAAAGCAAGGGAAAACATTGGATGAGATCCTGTCATCTCATCTTCACCAGGCAAAAACTTTTCGGGACAGTGACAAAGATGAATTGAGAGTTAAAGAAGAAACGGAAGCAACATTAGGTGCTTTACGGAACAAGAGGCTAAAACATGTCTGA

Protein sequence

MTHGDDGGLMLPPKLAPTQGVPLRIEIGPKDVASQSVGISRRDFPAKQGKTLDEILSSHLHQAKTFRDSDKDELRVKEETEATLGALRNKRLKHV

Homology

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BLAST of ClCG05G008300.1 vs. Swiss-Prot
Match: SYPM_ARATH (Proline--tRNA ligase, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=OVA6 PE=2 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 2.4e-09
Identity = 44/111 (39.64%), Postives = 51/111 (45.95%), Query Frame = 1


Query: 19  QGVPLRIEIGPKDVASQSVGISRRDFPAKQGKT-----------------LDEILSSHLH 78
           +G+PLRIEIGP+DV+S SV +SRRD P K GK                  LDEI +S L 
Sbjct: 402 KGIPLRIEIGPRDVSSNSVVVSRRDVPGKAGKVFGISMEPSTLVAYVKEKLDEIQTSLLE 461

Query: 79  QAKTFRD----------------------------SDKDELRVKEETEATL 85
           +A +FRD                            SD DE RVKEET AT+
Sbjct: 462 KALSFRDSNIVDVNSYAELKDAISSGKWARGPWSASDADEQRVKEETGATI 512

HSP 2 Score: 39.3 bits (90), Expect = 2.8e-02
Identity = 17/21 (80.95%), Postives = 16/21 (76.19%), Query Frame = 1


Query: 1   MTHGDDGGLMLPPKLAPTQGV 22
           MTHGDD GLMLPPK+AP Q V
Sbjct: 330 MTHGDDTGLMLPPKIAPIQVV 350

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BLAST of ClCG05G008300.1 vs. Swiss-Prot
Match: SYP_ROSS1 (Proline--tRNA ligase OS=Roseiflexus sp. (strain RS-1) GN=proS PE=3 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 4.2e-06
Identity = 34/107 (31.78%), Postives = 49/107 (45.79%), Query Frame = 1


Query: 19  QGVPLRIEIGPKDVASQSVGISRRDFPAKQGKT--------------LDEILSSHLHQAK 78
           +GVP+R+EIGPKD+   SV I+RRD P ++GK+              L+EI  +   +A 
Sbjct: 343 KGVPIRVEIGPKDIEKGSVAIARRDQPGREGKSFVPQDGLTDRLTALLEEIQQALYRRAL 402

Query: 79  TFRD---------------------------SDKDELRVKEETEATL 85
           TFR+                           + +DE R++EET AT+
Sbjct: 403 TFREDHTADVATYDELKQQVERGFARCYWAGTTEDEKRIQEETRATI 449

HSP 2 Score: 37.0 bits (84), Expect = 1.4e-01
Identity = 16/25 (64.00%), Postives = 18/25 (72.00%), Query Frame = 1


Query: 1   MTHGDDGGLMLPPKLAPTQGVPLRI 26
           MTH DD GL++PP+LAPTQ V + I
Sbjct: 272 MTHSDDEGLVIPPRLAPTQVVVVPI 296

[Close]

BLAST of ClCG05G008300.1 vs. Swiss-Prot
Match: SYP_CHLAD (Proline--tRNA ligase OS=Chloroflexus aggregans (strain MD-66 / DSM 9485) GN=proS PE=3 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 7.2e-06
Identity = 35/107 (32.71%), Postives = 47/107 (43.93%), Query Frame = 1


Query: 19  QGVPLRIEIGPKDVASQSVGISRRDFPAKQGKT--------------LDEILSSHLHQAK 78
           +GVP+RIEIGPKDVA ++V ++RRD P K GK+              L E+ +    +A 
Sbjct: 343 KGVPVRIEIGPKDVAKETVALARRDMPGKAGKSFVPQAGLTERIEALLAEMQTGLFQRAL 402

Query: 79  TFRD---------------------------SDKDELRVKEETEATL 85
            FR+                           S  DE R++EET AT+
Sbjct: 403 AFREARTADVTTYDELKEQIERGFARAYWAGSTADEKRIQEETRATI 449

HSP 2 Score: 35.4 bits (80), Expect = 4.1e-01
Identity = 16/25 (64.00%), Postives = 17/25 (68.00%), Query Frame = 1


Query: 1   MTHGDDGGLMLPPKLAPTQGVPLRI 26
           MTH DD GL+LPP+LAP Q V + I
Sbjct: 272 MTHSDDEGLVLPPRLAPIQVVVVPI 296

[Close]

BLAST of ClCG05G008300.1 vs. Swiss-Prot
Match: SYP_CHLSY (Proline--tRNA ligase OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) GN=proS PE=3 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 7.2e-06
Identity = 33/107 (30.84%), Postives = 49/107 (45.79%), Query Frame = 1


Query: 19  QGVPLRIEIGPKDVASQSVGISRRDFPAKQGKT--------------LDEILSSHLHQAK 78
           +GVP+RIE+GPKDVA ++V ++RRD P K GK+              L+E+ ++   +A 
Sbjct: 343 KGVPVRIEVGPKDVAKETVALARRDIPGKAGKSFVPQAGLTERIEALLNEMQTALFQRAL 402

Query: 79  TFRDS---------------------------DKDELRVKEETEATL 85
            FR++                             DE R++EET AT+
Sbjct: 403 AFREAHTADVTSYDELKEQIERGFARAYWAGDTADEKRIQEETRATI 449

HSP 2 Score: 35.4 bits (80), Expect = 4.1e-01
Identity = 16/25 (64.00%), Postives = 17/25 (68.00%), Query Frame = 1


Query: 1   MTHGDDGGLMLPPKLAPTQGVPLRI 26
           MTH DD GL+LPP+LAP Q V + I
Sbjct: 272 MTHSDDEGLVLPPRLAPIQVVVVPI 296

[Close]

BLAST of ClCG05G008300.1 vs. Swiss-Prot
Match: SYP_CHLAA (Proline--tRNA ligase OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=proS PE=3 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 7.2e-06
Identity = 33/107 (30.84%), Postives = 49/107 (45.79%), Query Frame = 1


Query: 19  QGVPLRIEIGPKDVASQSVGISRRDFPAKQGKT--------------LDEILSSHLHQAK 78
           +GVP+RIE+GPKDVA ++V ++RRD P K GK+              L+E+ ++   +A 
Sbjct: 343 KGVPVRIEVGPKDVAKETVALARRDIPGKAGKSFVPQAGLTERIEALLNEMQTALFQRAL 402

Query: 79  TFRDS---------------------------DKDELRVKEETEATL 85
            FR++                             DE R++EET AT+
Sbjct: 403 AFREAHTADVTSYDELKEQIERGFARAYWAGDTADEKRIQEETRATI 449

HSP 2 Score: 35.4 bits (80), Expect = 4.1e-01
Identity = 16/25 (64.00%), Postives = 17/25 (68.00%), Query Frame = 1


Query: 1   MTHGDDGGLMLPPKLAPTQGVPLRI 26
           MTH DD GL+LPP+LAP Q V + I
Sbjct: 272 MTHSDDEGLVLPPRLAPIQVVVVPI 296

[Close]

BLAST of ClCG05G008300.1 vs. TrEMBL
Match: A0A0A0L6I6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G213510 PE=3 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 7.9e-12
Identity = 53/110 (48.18%), Postives = 57/110 (51.82%), Query Frame = 1


Query: 19  QGVPLRIEIGPKDVASQSVGISRRDFPAKQGKT-----------------LDEILSSHLH 78
           +GVPLRIEIGPKDVAS+SV ISRRD P KQGK                  LDEI SS L 
Sbjct: 414 KGVPLRIEIGPKDVASKSVVISRRDIPGKQGKVFGISMEPSVLEAYVKERLDEIQSSLLQ 473

Query: 79  QAKTFRD----------------------------SDKDELRVKEETEAT 84
           QA+TFRD                            SD+DELRVKEET AT
Sbjct: 474 QARTFRDSNIVDVSSYNELKEAISEGKWARGPWSASDQDELRVKEETRAT 523

[Close]

BLAST of ClCG05G008300.1 vs. TrEMBL
Match: A0A0A0L6I6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G213510 PE=3 SV=1)

HSP 1 Score: 43.5 bits (101), Expect = 1.7e-01
Identity = 20/25 (80.00%), Postives = 21/25 (84.00%), Query Frame = 1


Query: 1   MTHGDDGGLMLPPKLAPTQGVPLRI 26
           MTHGDDGGLMLPPKLAP Q V + I
Sbjct: 342 MTHGDDGGLMLPPKLAPIQVVIIPI 366

HSP 2 Score: 75.5 bits (184), Expect = 3.9e-11
Identity = 50/134 (37.31%), Postives = 64/134 (47.76%), Query Frame = 1


Query: 1   MTHGDDGGLMLPPKLAPTQ-------------------------------GVPLRIEIGP 60
           MTHGDD GLMLPPK+AP Q                               GVP+RIEIGP
Sbjct: 185 MTHGDDTGLMLPPKIAPIQVVTVPIWKKETEKTGVLTAASSVKEVLQAAGGVPIRIEIGP 244

Query: 61  KDVASQSVGISRRDFPAKQGKT-----------------LDEILSSHLHQAKTFRDSDKD 87
           +DV+S  V +SRR+ P K GK                  LDEI SS L +A TFRD +  
Sbjct: 245 RDVSSNCVVVSRRNIPGKAGKVFGISMEPSTLVSYGKEKLDEIQSSLLEKAVTFRDINIV 304

[Close]

BLAST of ClCG05G008300.1 vs. TrEMBL
Match: A0A078EIH0_BRANA (BnaA10g07390D protein OS=Brassica napus GN=BnaA10g07390D PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 3.9e-11
Identity = 50/134 (37.31%), Postives = 64/134 (47.76%), Query Frame = 1


Query: 1   MTHGDDGGLMLPPKLAPTQ-------------------------------GVPLRIEIGP 60
           MTHGDD GLMLPPK+AP Q                               GVP+RIEIGP
Sbjct: 172 MTHGDDTGLMLPPKIAPIQVVTVPIWKKETEKTGVLTAASSVKEVLQAAGGVPIRIEIGP 231

Query: 61  KDVASQSVGISRRDFPAKQGKT-----------------LDEILSSHLHQAKTFRDSDKD 87
           +DV+S  V +SRR+ P K GK                  LDEI SS L +A TFRD +  
Sbjct: 232 RDVSSNCVVVSRRNIPGKAGKVFGISMEPSTLVSYGKEKLDEIQSSLLEKAVTFRDINIV 291

[Close]

BLAST of ClCG05G008300.1 vs. TrEMBL
Match: M5WP45_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa003818mg PE=3 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 2.6e-10
Identity = 49/111 (44.14%), Postives = 58/111 (52.25%), Query Frame = 1


Query: 19  QGVPLRIEIGPKDVASQSVGISRRDFPAKQGKT-----------------LDEILSSHLH 78
           +GVPLRIEIGP+DV+SQSV +SRRD P KQGK                  LDEI SS L 
Sbjct: 405 KGVPLRIEIGPRDVSSQSVVVSRRDVPGKQGKVFGISMEPSVLEAYIKDKLDEIQSSLLE 464

Query: 79  QAKTFRDS----------------------------DKDELRVKEETEATL 85
           +A++FRDS                            DK+ELRVKEET AT+
Sbjct: 465 KAESFRDSNIVDVSSYDELKVAISQGKWARGPWSAGDKEELRVKEETGATI 515

[Close]

BLAST of ClCG05G008300.1 vs. TrEMBL
Match: M5WP45_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa003818mg PE=3 SV=1)

HSP 1 Score: 39.7 bits (91), Expect = 2.4e+00
Identity = 18/25 (72.00%), Postives = 20/25 (80.00%), Query Frame = 1


Query: 1   MTHGDDGGLMLPPKLAPTQGVPLRI 26
           MTHGDD GLMLPPK+AP Q V + I
Sbjct: 333 MTHGDDTGLMLPPKIAPIQVVIIPI 357

HSP 2 Score: 71.2 bits (173), Expect = 7.4e-10
Identity = 49/111 (44.14%), Postives = 56/111 (50.45%), Query Frame = 1


Query: 19  QGVPLRIEIGPKDVASQSVGISRRDFPAKQGKT-----------------LDEILSSHLH 78
           +GVPLRIEIGP+DVAS SV +SRRD P K+GK                  LDEI SS L 
Sbjct: 407 KGVPLRIEIGPRDVASGSVVVSRRDIPGKEGKVFGISMEPAVLEAYVKDKLDEIQSSLLQ 466

Query: 79  QAKTFRD----------------------------SDKDELRVKEETEATL 85
           +AK FRD                            SD+DELRVKEET AT+
Sbjct: 467 RAKLFRDRNILDVSSYDELKEAISQGKWARGPWSASDQDELRVKEETGATI 517

[Close]

BLAST of ClCG05G008300.1 vs. TAIR10
Match: AT5G52520.1 (AT5G52520.1 Class II aaRS and biotin synthetases superfamily protein)

HSP 1 Score: 62.8 bits (151), Expect = 1.3e-10
Identity = 44/111 (39.64%), Postives = 51/111 (45.95%), Query Frame = 1


Query: 19  QGVPLRIEIGPKDVASQSVGISRRDFPAKQGKT-----------------LDEILSSHLH 78
           +G+PLRIEIGP+DV+S SV +SRRD P K GK                  LDEI +S L 
Sbjct: 402 KGIPLRIEIGPRDVSSNSVVVSRRDVPGKAGKVFGISMEPSTLVAYVKEKLDEIQTSLLE 461

Query: 79  QAKTFRD----------------------------SDKDELRVKEETEATL 85
           +A +FRD                            SD DE RVKEET AT+
Sbjct: 462 KALSFRDSNIVDVNSYAELKDAISSGKWARGPWSASDADEQRVKEETGATI 512

HSP 2 Score: 39.3 bits (90), Expect = 1.6e-03
Identity = 17/21 (80.95%), Postives = 16/21 (76.19%), Query Frame = 1


Query: 1   MTHGDDGGLMLPPKLAPTQGV 22
           MTHGDD GLMLPPK+AP Q V
Sbjct: 330 MTHGDDTGLMLPPKIAPIQVV 350

[Close]

BLAST of ClCG05G008300.1 vs. NCBI nr
Match: gi|672193095|ref|XP_008775943.1| (PREDICTED: proline--tRNA ligase isoform X2 [Phoenix dactylifera])

HSP 1 Score: 95.1 bits (235), Expect = 6.9e-17
Identity = 57/129 (44.19%), Postives = 72/129 (55.81%), Query Frame = 1


Query: 1   MTHGDDGGLMLPPKLAPTQGVPLRIEIGPKDVASQSVGISRRDFPAKQGK---------- 60
           MTHGDD GLMLPP++AP QGVPLRIE+GP+DVA++SV +SRRD P K GK          
Sbjct: 342 MTHGDDAGLMLPPRIAPIQGVPLRIEVGPRDVANRSVVVSRRDIPGKPGKDFGVSMEPSK 401

Query: 61  -------TLDEILSSHLHQAKTFRDS----------------------------DKDELR 85
                   L++I +S L +A +FRDS                            DK+EL+
Sbjct: 402 LESHVKSRLEDIQASLLQRAISFRDSNIVDVHSYEELKAVIAQGKWARGPWSAGDKEELK 461

[Close]

BLAST of ClCG05G008300.1 vs. NCBI nr
Match: gi|659112176|ref|XP_008456101.1| (PREDICTED: proline--tRNA ligase, partial [Cucumis melo])

HSP 1 Score: 79.7 bits (195), Expect = 3.0e-12
Identity = 54/111 (48.65%), Postives = 59/111 (53.15%), Query Frame = 1


Query: 19  QGVPLRIEIGPKDVASQSVGISRRDFPAKQGK-----------------TLDEILSSHLH 78
           +GVPLRIEIGPKDVAS+SV ISRRD P KQGK                 TLDEI SS L 
Sbjct: 403 KGVPLRIEIGPKDVASKSVVISRRDIPGKQGKVFGISMEPSVLEAYVKETLDEIQSSLLQ 462

Query: 79  QAKTFRD----------------------------SDKDELRVKEETEATL 85
           QA+TFRD                            SD+DELRVKEET AT+
Sbjct: 463 QARTFRDSNIVDVSSYNELKEAISEGKWARGPWSASDQDELRVKEETGATI 513

[Close]

BLAST of ClCG05G008300.1 vs. NCBI nr
Match: gi|659112176|ref|XP_008456101.1| (PREDICTED: proline--tRNA ligase, partial [Cucumis melo])

HSP 1 Score: 43.5 bits (101), Expect = 2.4e-01
Identity = 20/25 (80.00%), Postives = 21/25 (84.00%), Query Frame = 1


Query: 1   MTHGDDGGLMLPPKLAPTQGVPLRI 26
           MTHGDDGGLMLPPKLAP Q V + I
Sbjct: 331 MTHGDDGGLMLPPKLAPIQVVIIPI 355

HSP 2 Score: 77.8 bits (190), Expect = 1.1e-11
Identity = 53/110 (48.18%), Postives = 57/110 (51.82%), Query Frame = 1


Query: 19  QGVPLRIEIGPKDVASQSVGISRRDFPAKQGKT-----------------LDEILSSHLH 78
           +GVPLRIEIGPKDVAS+SV ISRRD P KQGK                  LDEI SS L 
Sbjct: 414 KGVPLRIEIGPKDVASKSVVISRRDIPGKQGKVFGISMEPSVLEAYVKERLDEIQSSLLQ 473

Query: 79  QAKTFRD----------------------------SDKDELRVKEETEAT 84
           QA+TFRD                            SD+DELRVKEET AT
Sbjct: 474 QARTFRDSNIVDVSSYNELKEAISEGKWARGPWSASDQDELRVKEETRAT 523

[Close]

BLAST of ClCG05G008300.1 vs. NCBI nr
Match: gi|778680145|ref|XP_004149956.2| (PREDICTED: proline--tRNA ligase [Cucumis sativus])

HSP 1 Score: 43.5 bits (101), Expect = 2.4e-01
Identity = 20/25 (80.00%), Postives = 21/25 (84.00%), Query Frame = 1


Query: 1   MTHGDDGGLMLPPKLAPTQGVPLRI 26
           MTHGDDGGLMLPPKLAP Q V + I
Sbjct: 342 MTHGDDGGLMLPPKLAPIQVVIIPI 366

HSP 2 Score: 75.5 bits (184), Expect = 5.7e-11
Identity = 50/134 (37.31%), Postives = 64/134 (47.76%), Query Frame = 1


Query: 1   MTHGDDGGLMLPPKLAPTQ-------------------------------GVPLRIEIGP 60
           MTHGDD GLMLPPK+AP Q                               GVP+RIEIGP
Sbjct: 172 MTHGDDTGLMLPPKIAPIQVVTVPIWKKETEKTGVLTAASSVKEVLQAAGGVPIRIEIGP 231

Query: 61  KDVASQSVGISRRDFPAKQGKT-----------------LDEILSSHLHQAKTFRDSDKD 87
           +DV+S  V +SRR+ P K GK                  LDEI SS L +A TFRD +  
Sbjct: 232 RDVSSNCVVVSRRNIPGKAGKVFGISMEPSTLVSYGKEKLDEIQSSLLEKAVTFRDINIV 291

[Close]

BLAST of ClCG05G008300.1 vs. NCBI nr
Match: gi|645266460|ref|XP_008238621.1| (PREDICTED: proline--tRNA ligase-like [Prunus mume])

HSP 1 Score: 74.3 bits (181), Expect = 1.3e-10
Identity = 50/111 (45.05%), Postives = 58/111 (52.25%), Query Frame = 1


Query: 19  QGVPLRIEIGPKDVASQSVGISRRDFPAKQGKT-----------------LDEILSSHLH 78
           +GVPLRIEIGP+DV+SQSV +SRRD P KQGK                  LDEI SS L 
Sbjct: 405 KGVPLRIEIGPRDVSSQSVVVSRRDVPGKQGKVFGISMEPSVLEAYIKDKLDEIQSSLLE 464

Query: 79  QAKTFRDS----------------------------DKDELRVKEETEATL 85
           +AK+FRDS                            DK+ELRVKEET AT+
Sbjct: 465 KAKSFRDSNIVDVSSYDELKVAISQGKWARGPWSAGDKEELRVKEETGATI 515

The following BLAST results are available for this feature:

BLAST of ClCG05G008300.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SYPM_ARATH	2.4e-09	39.64	Proline--tRNA ligase, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=OVA...	[more]
SYP_ROSS1	4.2e-06	31.78	Proline--tRNA ligase OS=Roseiflexus sp. (strain RS-1) GN=proS PE=3 SV=1	[more]
SYP_CHLAD	7.2e-06	32.71	Proline--tRNA ligase OS=Chloroflexus aggregans (strain MD-66 / DSM 9485) GN=proS...	[more]
SYP_CHLSY	7.2e-06	30.84	Proline--tRNA ligase OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / ...	[more]
SYP_CHLAA	7.2e-06	30.84	Proline--tRNA ligase OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / ...	[more]

BLAST of ClCG05G008300.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L6I6_CUCSA	7.9e-12	48.18	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G213510 PE=3 SV=1	[more]
A0A0A0L6I6_CUCSA	1.7e-01	80.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G213510 PE=3 SV=1	[more]
A0A078EIH0_BRANA	3.9e-11	37.31	BnaA10g07390D protein OS=Brassica napus GN=BnaA10g07390D PE=4 SV=1	[more]
M5WP45_PRUPE	2.6e-10	44.14	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa003818mg PE=3 SV=1	[more]
M5WP45_PRUPE	2.4e+00	72.00	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa003818mg PE=3 SV=1	[more]

BLAST of ClCG05G008300.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G52520.1	1.3e-10	39.64	Class II aaRS and biotin synthetases superfamily protein	[more]

BLAST of ClCG05G008300.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|672193095\|ref\|XP_008775943.1\|	6.9e-17	44.19	PREDICTED: proline--tRNA ligase isoform X2 [Phoenix dactylifera]	[more]
gi\|659112176\|ref\|XP_008456101.1\|	3.0e-12	48.65	PREDICTED: proline--tRNA ligase, partial [Cucumis melo]	[more]
gi\|659112176\|ref\|XP_008456101.1\|	2.4e-01	80.00	PREDICTED: proline--tRNA ligase, partial [Cucumis melo]	[more]
gi\|778680145\|ref\|XP_004149956.2\|	2.4e-01	80.00	PREDICTED: proline--tRNA ligase [Cucumis sativus]	[more]
gi\|645266460\|ref\|XP_008238621.1\|	1.3e-10	45.05	PREDICTED: proline--tRNA ligase-like [Prunus mume]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR004154	Anticodon-bd

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009987	cellular process
biological_process	GO:0044699	single-organism process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
ClCG05G008300	ClCG05G008300	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
ClCG05G008300.1	ClCG05G008300.1-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG05G008300.1.five_prime_UTR1	ClCG05G008300.1.five_prime_UTR1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG05G008300.1.cds1	ClCG05G008300.1.cds1	CDS
ClCG05G008300.1.cds2	ClCG05G008300.1.cds2	CDS
ClCG05G008300.1.cds3	ClCG05G008300.1.cds3	CDS
ClCG05G008300.1.cds4	ClCG05G008300.1.cds4	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG05G008300.1.three_prime_UTR1	ClCG05G008300.1.three_prime_UTR1	three_prime_UTR
ClCG05G008300.1.three_prime_UTR2	ClCG05G008300.1.three_prime_UTR2	three_prime_UTR
ClCG05G008300.1.three_prime_UTR3	ClCG05G008300.1.three_prime_UTR3	three_prime_UTR
ClCG05G008300.1.three_prime_UTR4	ClCG05G008300.1.three_prime_UTR4	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004154	Anticodon-binding	GENE3D	G3DSA:3.40.50.800		coord: 18..58 score: 9.
IPR004154	Anticodon-binding	unknown	SSF52954	Class II aaRS ABD-related	coord: 18..62 score: 1.1