ClCG05G008300 (gene) Watermelon (Charleston Gray)

Overview
NameClCG05G008300
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionProline--tRNA ligase
LocationCG_Chr05 : 8979805 .. 8984243 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACAAAGGCAACATGTATGGCAGACATCATGGGCAGTTAGTACGCGTTTTGTTGGAGGAATTATTATGACTCATGGAGATGATGGAGGTTTAATGCTTCCACCAAAGCTTGCTCCAACACAGGTATTGATATGAATTTACAATTTGTAATATGAACAGTATTTCTATCTGTTGAATATTCAGCATATATTGACTAGTTAGCTGCCAATAGAAATTCATGTGGACTTCTTTTTTTTTATTTTATTTATCTATATAAATATATATATATATATATATATATATATATATATATATATATATATATATATATGATTTCGGTATCTGTTATGNTTCTTTTTTTTTTTTTTTTTTATCTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATGATTTCGGTATCTGTTATGGGTATTTTCACAACTTGGAATCTAGTTTGCGGAAAAGAAAATATTTCCGCAGTGTAGGTTGGTTGGCTGGCATTTTTATTTAAGGATGTATATATTGATCATTGATAGTTTTGAATGTTAAATCCCCTTTTTAGCAAAATGATTTTCGCTTAGATATTTTCTTCCTCCCTCTTTGCATTTGTTGCTATTAACTTGAAATCAAATATATGTAACTAGGGTTTGATTGTAGGGTGTTCCTTTGAGGATTGAGATTGGGCCTAAGGATGTTGCAAGTCAAAGTGTGGGCATATCTAGGAGAGACTTTCCTGCAAAGCAAGGGAAAGTTTTTTTGAATATCCACGGAACCTTCTGTTTTAGAAGCTTATGTACAAGAGACATTGGATGAGATCCTGTCATCTCATCTTCACCAGGCAAAAACTTTTCGGGACAGGTACTTCCTTATTTTCTTATGTTAGGGATGTTATTTAATAAATATGTGAATCTACATTTGGGTACATTACATTTATTATTTTAGAATTGAAGCAATTGAATGTTGAATAGCACACTTCTTGCAAATTATAGTGCAGTTTTAGATTCTCTGCAATTAGAATGTATTTGTAATTAGAATGTATTTGTAAATACATTCTGTTGAATTGTGAGCTTGAAGAAAATTGTTCCTATCTTCACCCTCATTTTCTTCCTGTCCCCGCACCTTTGCTTACCCCATCGAGTTTATTTTCCCTCTCTCTCTTTACCAGATTCATGCACAAAAACATTCTCTAAATGTTTCATTATATCCTTAAAGGAAAGAAAGGATGGGAATGACTGGTGTGCTTCCCAGTTCTCATTTCATCAGTTTCCGTGGTAGTGATATTCTTGATCAAATTTTGAAGTTGTAAATAGTGTCTTAGTGTGCATTCTGTGCATTTTTTTTCATTTAAAAGAAATAAAAATAGTGGTTAGTCTGACAGTATGGTTAAATTTGTCTAACACTGGATCAGTTCTAAAGCTGATGTGGGACTGAACTATTTTTTAACACTCTTGATAATGATTTTATCTTAAAATATGAAAATCCTGCTAGGGGTCCTTGGTCAGCTAGATAGGCTTAATTTCATTTATTGGGATTTGTTTATAAGTCTTCGATTTTTATGTAGCCCATTGGTCAGCGAGGTTGGCTTAATTTTATTTATTAGGATTTGTTTAAAGTCTTTGATTTAAATGTTTGCGCGTAATTGTTTGCATCTGTATGCTCTTGGACATTTTCAGTGACAAAGATGAATTGAGAGTTAAAGAAGAAACGGAAGCAACATTAGGTGCTTTACGGAACAAGAGGCTAAAACATGTCTGATGACTGGTAACCCTGCTGAGGAAGTTGCCATTTTTGCGAAGTCTTACTGAGATATAATTTCAAGGCACGACTTAAAACCTCCAAGTCTTGTTCATTTTGGCCGTTTAATCACGTTTGCACAATATCTTAAAGTCAAAGGTCATGTTAAATATTCCTTGAAGAGGGAGCCTTCTAAATCAGTTCTTCTAAGGCAAAAGGCTCTAGCTAGTTGGTTGGCCTTGGCATTTATCTTTTAAAGTTTGACGTGTTTTTGTTCTCTGCCTGCCTAATTATTTTGCTTGGTGGCTCAATCCTTCATTTTTGGAGCACTATCTAAGTGATCCATTTATTTATGAACTAAATGGATTAACAATCTTGATAAAGCGGCACTTAGTTTTTGTCTTTGTTTCACGTTTCATAACATGAGCTTGTTGTTTCATTGTTACGAACTATGATGTTGGTCTTGTGAACTACGTGACGTAGTATTATGTTGAATATTTAACCCCTCCGCAATTCTGTGATTTTGTTGGTACAAGGAAACAATTTTAGCATTAGGATAAAACAGTTATTTGTTTGTATTCTCACTTGAATTTGGCACAAATGTAATGTAGCACCTAGAAATTTTGGGTTGAAATGTATTGAGTGGACATTGGCTCACTTGAACGAACACAAGAAAATACAGATAATACAAGAACATGAACCTTAACTTCATAATCCAACATGACCATTTAAAGCAATATGATACGGCTTCAAGCTTTAAATTATGCACCGTACTTCAGGTCTTTACCAGGTGAAACTCATAGAGTGAAACTTCAGATTATCTCCATAAGCAGTTGAACAAATTTTTGCTACGTCATGCCGCATCCCGGTTGGGCCGCTGACTAAAACTCCAATATCCGTTCCTTTGCAGTCGAACAGAATTTCTGCATTACAAAACATGTTACCATATATCATTGATGTTGTTTGATATATATGTGTGTGTGCGGCGCTTTTGGTTGATACCAAGGCAGGAAAACTTACTCTCGAGATCAGGCCTACCCCCATAATGGATGTTGGTTGCTTGAACAAGGGATTGGTAGGGAAGGCTCTCGAGCTCACTATCACCTCCGAAGATCCATGACCCAGGTGATGCTTTTGGTGATTGAAAATTGTGAATTTGTATTTGTTTGCCATGTGAAGCATTTGTTTTCCTTTGCCACAGAAAGACAAAGCTAGAAGATATGCAAATACAAGCAAATGCTAAGAACATGTCCCAAAGAACCTTAAAGGTGTAATTGTAAACGGCATCCCCATTTCGTTCAATTGGGTAAATGTAGTAGCGAGTGATGATGCCTAAAAGAATCAAGAACATCACAAACGAAGATGAGATAATTGCGGCAAGTAGCAGCCAATTGTTTGCTCCAAGGGCCTCCGACACTGGTGAGTCTAATGGATTTGGCTTAAACCATATTGTATTTATGAGATTTTCAGAATTTGTTTGAGGTTGTTCTTTCTCTCTGGTGATATAAGCTTCAATCTGTAATGGTACATTTGAAATTTCTGTTTGTGTGCTAGATACTGGAAGCAAGAGATCCAGCATAGTGAGATCAATGGAATTCTTGAAGGCGCAGACGAGGCGAATTTGCGGAACATGGCAGTTCGGTTTTGTGCTTCGAACAATCATTATCTCTCTGATTATTGAAATGAAGGGAGTAATTCCACTTCCTCCACTTATCAGCAGCAGAGATTCATGCCTTCAAAAGAGAAAACATGTATCAAATTTAAGCAATTAAACTCCAGTAATTCAAAGCTATTTTGGCTGTAGGAAATCACCTTAAAAAGTGAGTAGAAGCAGGGCCATATGGACCTTCAACAGAAACTTGAAGGTGATCCAGAGAAGAAGAAAGTTGTTGGTGAAGTTTGGAAGTCCAACTTCCCCCTGCTTTGATAACAACACTCACTGTATCAGGCTCCAATTTGCAGTTAGAAGTGACTGTAAATGGATGCCACTGCAGTTTGGAAATGCTTGGCACATTTATGAACATCACACTTGTAGGATTATAGCATAGTTCTGATCAGAAAAAGGGTAAATTCCAATCAAATATTAGGCAAAAGACAAAAACAATAGAAAGAGTCTCAATGATCAGCTCTTGAAGAAACTAGACCTGGACTTTTCAAGAAATTTAGTTCAACAGCACCACAAGGAAGATGGCGAGCTGAAACCAAGCTTACTCGCCGTTGCGATTGTAAGAATCGTAAGTTTCGATCGATAGCCCAGAGAAAGATGCCAGGAAGAATCAAGCATACATATGCTGCTCCCACATGGATTAGATAAAAGATTATATACAGAATGTAGAAATGGTGACTGTAATAGAAAACTTCAAACATTTTTCGACGAATCGTCTGAAAGCTTGTAACCCAGATAACTGTTGCAAATACCATAGCAATCACTCCAGCAACATTTGATACATAGTCTTCACTCCATTGTATCAACTGCTCAAAGATGCACATTCAATTAGTAATGGTTCAGGAGCAACACGTGAAGCAATATACTAATAGAAAAATAACATGGTTCTTGCTTTGAAGTTTGAATTTTGTTGTTGTAGCCAAGAATCATCTTCTTTCCTTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTTTTTGTTAGAACATGAGTTGTTTTAAGCACAATTGAA

mRNA sequence

ATGGACAAAGGCAACATGTATGGCAGACATCATGGGCAGTTAGTACGCGTTTTGTTGGAGGAATTATTATGACTCATGGAGATGATGGAGGTTTAATGCTTCCACCAAAGCTTGCTCCAACACAGGGTGTTCCTTTGAGGATTGAGATTGGGCCTAAGGATGTTGCAAGTCAAAGTGTGGGCATATCTAGGAGAGACTTTCCTGCAAAGCAAGGGAAAACATTGGATGAGATCCTGTCATCTCATCTTCACCAGGCAAAAACTTTTCGGGACAGTGACAAAGATGAATTGAGAGTTAAAGAAGAAACGGAAGCAACATTAGGTGCTTTACGGAACAAGAGGCTAAAACATGTCTGATGACTGGTAACCCTGCTGAGGAAGTTGCCATTTTTGCGAAGTCTTACTGAGATATAATTTCAAGGCACGACTTAAAACCTCCAAGTCTTGTTCATTTTGGCCGTTTAATCACGTTTGCACAATATCTTAAAGTCAAAGGTCATGTTAAATATTCCTTGAAGAGGGAGCCTTCTAAATCAGTTCTTCTAAGGCAAAAGGCTCTAGCTAGTTGGTTGGCCTTGGCATTTATCTTTTAAAGTTTGACGTGTTTTTGTTCTCTGCCTGCCTAATTATTTTGCTTGGTGGCTCAATCCTTCATTTTTGGAGCACTATCTAAGTGATCCATTTATTTATGAACTAAATGGATTAACAATCTTGATAAAGCGGCACTTAGTTTTTGTCTTTGTTTCACGTTTCATAACATGAGCTTGTTGTTTCATTGTTACGAACTATGATGTTGGTCTTGTGAACTACGTGACGTAGTATTATGTTGAATATTTAACCCCTCCGCAATTCTGTGATTTTGTTGGTACAAGGAAACAATTTTAGCATTAGGATAAAACAGTTATTTGTTTGTATTCTCACTTGAATTTGGCACAAATGTAATGTAGCACCTAGAAATTTTGGGTTGAAATGTATTGAGTGGACATTGGCTCACTTGAACGAACACAAGAAAATACAGATAATACAAGAACATGAACCTTAACTTCATAATCCAACATGACCATTTAAAGCAATATGATACGGCTTCAAGCTTTAAATTATGCACCGTACTTCAGGTCTTTACCAGGTGAAACTCATAGAGTGAAACTTCAGATTATCTCCATAAGCAGTTGAACAAATTTTTGCTACGTCATGCCGCATCCCGGTTGGGCCGCTGACTAAAACTCCAATATCCGTTCCTTTGCAGTCGAACAGAATTTCTGCATTACAAAACATGTTACCATATATCATTGATGTTGTTTGATATATATGTGTGTGTGCGGCGCTTTTGGTTGATACCAAGGCAGGAAAACTTACTCTCGAGATCAGGCCTACCCCCATAATGGATGTTGGTTGCTTGAACAAGGGATTGGTAGGGAAGGCTCTCGAGCTCACTATCACCTCCGAAGATCCATGACCCAGAAAGACAAAGCTAGAAGATATGCAAATACAAGCAAATGCTAAGAACATGTCCCAAAGAACCTTAAAGGTGTAATTGTAAACGGCATCCCCATTTCGTTCAATTGGGTAAATGTAGTAGCGAGTGATGATGCCTAAAAGAATCAAGAACATCACAAACGAAGATGAGATAATTGCGGCAAGTAGCAGCCAATTGTTTGCTCCAAGGGCCTCCGACACTGATACTGGAAGCAAGAGATCCAGCATAGTGAGATCAATGGAATTCTTGAAGGCGCAGACGAGGCGAATTTGCGGAACATGGCAGTTCGGTTTTGTGCTTCGAACAATCATTATCTCTCTGATTATTGAAATGAAGGGAGTAATTCCACTTCCTCCACTTATCAGCAGCAGAGATTCATGCCTTCAAAAGAGAAAACATGTATCAAATTTAAGCAATTAAACTCCAGTAATTCAAAGCTATTTTGGCTGTAGGAAATCACCTTAAAAAGTGAGTAGAAGCAGGGCCATATGGACCTTCAACAGAAACTTGAAGGTGATCCAGAGAAGAAGAAAGTTGTTGGTGAAGTTTGGAAGTCCAACTTCCCCCTGCTTTGATAACAACACTCACTGTATCAGGCTCCAATTTGCAGTTAGAAGTGACTGTAAATGGATGCCACTGCAGTTTGGAAATGCTTGGCACATTTATGAACATCACACTTGTAGGATTATAGCATAGTTCTGATCAGAAAAAGGGTAAATTCCAATCAAATATTAGGCAAAAGACAAAAACAATAGAAAGAGTCTCAATGATCAGCTCTTGAAGAAACTAGACCTGGACTTTTCAAGAAATTTAGTTCAACAGCACCACAAGGAAGATGGCGAGCTGAAACCAAGCTTACTCGCCGTTGCGATTGTAAGAATCGTAAGTTTCGATCGATAGCCCAGAGAAAGATGCCAGGAAGAATCAAGCATACATATGCTGCTCCCACATGGATTAGATAAAAGATTATATACAGAATGTAGAAATGGTGACTGTAATAGAAAACTTCAAACATTTTTCGACGAATCGTCTGAAAGCTTGTAACCCAGATAACTGTTGCAAATACCATAGCAATCACTCCAGCAACATTTGATACATAGTCTTCACTCCATTGTATCAACTGCTCAAAGATGCACATTCAATTAGTAATGGTTCAGGAGCAACACGTGAAGCAATATACTAATAGAAAAATAACATGGTTCTTGCTTTATTATTATTATTATTATTATTATTATTATTATTATTATTATTTTTTGTTAGAACATGAGTTGTTTTAAGCACAATTGAA

Coding sequence (CDS)

ATGACTCATGGAGATGATGGAGGTTTAATGCTTCCACCAAAGCTTGCTCCAACACAGGGTGTTCCTTTGAGGATTGAGATTGGGCCTAAGGATGTTGCAAGTCAAAGTGTGGGCATATCTAGGAGAGACTTTCCTGCAAAGCAAGGGAAAACATTGGATGAGATCCTGTCATCTCATCTTCACCAGGCAAAAACTTTTCGGGACAGTGACAAAGATGAATTGAGAGTTAAAGAAGAAACGGAAGCAACATTAGGTGCTTTACGGAACAAGAGGCTAAAACATGTCTGA

Protein sequence

MTHGDDGGLMLPPKLAPTQGVPLRIEIGPKDVASQSVGISRRDFPAKQGKTLDEILSSHLHQAKTFRDSDKDELRVKEETEATLGALRNKRLKHV
Homology
[Close]
BLAST of ClCG05G008300 vs. Swiss-Prot
Match: SYPM_ARATH (Proline--tRNA ligase, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=OVA6 PE=2 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 2.4e-09
Identity = 44/111 (39.64%), Postives = 51/111 (45.95%), Query Frame = 1 

Query: 19  QGVPLRIEIGPKDVASQSVGISRRDFPAKQGKT-----------------LDEILSSHLH 78
           +G+PLRIEIGP+DV+S SV +SRRD P K GK                  LDEI +S L 
Sbjct: 402 KGIPLRIEIGPRDVSSNSVVVSRRDVPGKAGKVFGISMEPSTLVAYVKEKLDEIQTSLLE 461

Query: 79  QAKTFRD----------------------------SDKDELRVKEETEATL 85
           +A +FRD                            SD DE RVKEET AT+
Sbjct: 462 KALSFRDSNIVDVNSYAELKDAISSGKWARGPWSASDADEQRVKEETGATI 512


HSP 2 Score: 39.3 bits (90), Expect = 2.8e-02
Identity = 17/21 (80.95%), Postives = 16/21 (76.19%), Query Frame = 1 

Query: 1   MTHGDDGGLMLPPKLAPTQGV 22
           MTHGDD GLMLPPK+AP Q V
Sbjct: 330 MTHGDDTGLMLPPKIAPIQVV 350

[Close]
BLAST of ClCG05G008300 vs. Swiss-Prot
Match: SYP_ROSS1 (Proline--tRNA ligase OS=Roseiflexus sp. (strain RS-1) GN=proS PE=3 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 4.2e-06
Identity = 34/107 (31.78%), Postives = 49/107 (45.79%), Query Frame = 1 

Query: 19  QGVPLRIEIGPKDVASQSVGISRRDFPAKQGKT--------------LDEILSSHLHQAK 78
           +GVP+R+EIGPKD+   SV I+RRD P ++GK+              L+EI  +   +A 
Sbjct: 343 KGVPIRVEIGPKDIEKGSVAIARRDQPGREGKSFVPQDGLTDRLTALLEEIQQALYRRAL 402

Query: 79  TFRD---------------------------SDKDELRVKEETEATL 85
           TFR+                           + +DE R++EET AT+
Sbjct: 403 TFREDHTADVATYDELKQQVERGFARCYWAGTTEDEKRIQEETRATI 449


HSP 2 Score: 37.0 bits (84), Expect = 1.4e-01
Identity = 16/25 (64.00%), Postives = 18/25 (72.00%), Query Frame = 1 

Query: 1   MTHGDDGGLMLPPKLAPTQGVPLRI 26
           MTH DD GL++PP+LAPTQ V + I
Sbjct: 272 MTHSDDEGLVIPPRLAPTQVVVVPI 296

[Close]
BLAST of ClCG05G008300 vs. Swiss-Prot
Match: SYP_CHLAD (Proline--tRNA ligase OS=Chloroflexus aggregans (strain MD-66 / DSM 9485) GN=proS PE=3 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 7.2e-06
Identity = 35/107 (32.71%), Postives = 47/107 (43.93%), Query Frame = 1 

Query: 19  QGVPLRIEIGPKDVASQSVGISRRDFPAKQGKT--------------LDEILSSHLHQAK 78
           +GVP+RIEIGPKDVA ++V ++RRD P K GK+              L E+ +    +A 
Sbjct: 343 KGVPVRIEIGPKDVAKETVALARRDMPGKAGKSFVPQAGLTERIEALLAEMQTGLFQRAL 402

Query: 79  TFRD---------------------------SDKDELRVKEETEATL 85
            FR+                           S  DE R++EET AT+
Sbjct: 403 AFREARTADVTTYDELKEQIERGFARAYWAGSTADEKRIQEETRATI 449


HSP 2 Score: 35.4 bits (80), Expect = 4.1e-01
Identity = 16/25 (64.00%), Postives = 17/25 (68.00%), Query Frame = 1 

Query: 1   MTHGDDGGLMLPPKLAPTQGVPLRI 26
           MTH DD GL+LPP+LAP Q V + I
Sbjct: 272 MTHSDDEGLVLPPRLAPIQVVVVPI 296

[Close]
BLAST of ClCG05G008300 vs. Swiss-Prot
Match: SYP_CHLSY (Proline--tRNA ligase OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) GN=proS PE=3 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 7.2e-06
Identity = 33/107 (30.84%), Postives = 49/107 (45.79%), Query Frame = 1 

Query: 19  QGVPLRIEIGPKDVASQSVGISRRDFPAKQGKT--------------LDEILSSHLHQAK 78
           +GVP+RIE+GPKDVA ++V ++RRD P K GK+              L+E+ ++   +A 
Sbjct: 343 KGVPVRIEVGPKDVAKETVALARRDIPGKAGKSFVPQAGLTERIEALLNEMQTALFQRAL 402

Query: 79  TFRDS---------------------------DKDELRVKEETEATL 85
            FR++                             DE R++EET AT+
Sbjct: 403 AFREAHTADVTSYDELKEQIERGFARAYWAGDTADEKRIQEETRATI 449


HSP 2 Score: 35.4 bits (80), Expect = 4.1e-01
Identity = 16/25 (64.00%), Postives = 17/25 (68.00%), Query Frame = 1 

Query: 1   MTHGDDGGLMLPPKLAPTQGVPLRI 26
           MTH DD GL+LPP+LAP Q V + I
Sbjct: 272 MTHSDDEGLVLPPRLAPIQVVVVPI 296

[Close]
BLAST of ClCG05G008300 vs. Swiss-Prot
Match: SYP_CHLAA (Proline--tRNA ligase OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=proS PE=3 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 7.2e-06
Identity = 33/107 (30.84%), Postives = 49/107 (45.79%), Query Frame = 1 

Query: 19  QGVPLRIEIGPKDVASQSVGISRRDFPAKQGKT--------------LDEILSSHLHQAK 78
           +GVP+RIE+GPKDVA ++V ++RRD P K GK+              L+E+ ++   +A 
Sbjct: 343 KGVPVRIEVGPKDVAKETVALARRDIPGKAGKSFVPQAGLTERIEALLNEMQTALFQRAL 402

Query: 79  TFRDS---------------------------DKDELRVKEETEATL 85
            FR++                             DE R++EET AT+
Sbjct: 403 AFREAHTADVTSYDELKEQIERGFARAYWAGDTADEKRIQEETRATI 449


HSP 2 Score: 35.4 bits (80), Expect = 4.1e-01
Identity = 16/25 (64.00%), Postives = 17/25 (68.00%), Query Frame = 1 

Query: 1   MTHGDDGGLMLPPKLAPTQGVPLRI 26
           MTH DD GL+LPP+LAP Q V + I
Sbjct: 272 MTHSDDEGLVLPPRLAPIQVVVVPI 296

[Close]
BLAST of ClCG05G008300 vs. TrEMBL
Match: A0A0A0L6I6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G213510 PE=3 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 7.9e-12
Identity = 53/110 (48.18%), Postives = 57/110 (51.82%), Query Frame = 1 

Query: 19  QGVPLRIEIGPKDVASQSVGISRRDFPAKQGKT-----------------LDEILSSHLH 78
           +GVPLRIEIGPKDVAS+SV ISRRD P KQGK                  LDEI SS L 
Sbjct: 414 KGVPLRIEIGPKDVASKSVVISRRDIPGKQGKVFGISMEPSVLEAYVKERLDEIQSSLLQ 473

Query: 79  QAKTFRD----------------------------SDKDELRVKEETEAT 84
           QA+TFRD                            SD+DELRVKEET AT
Sbjct: 474 QARTFRDSNIVDVSSYNELKEAISEGKWARGPWSASDQDELRVKEETRAT 523

[Close]
BLAST of ClCG05G008300 vs. TrEMBL
Match: A0A0A0L6I6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G213510 PE=3 SV=1)

HSP 1 Score: 43.5 bits (101), Expect = 1.7e-01
Identity = 20/25 (80.00%), Postives = 21/25 (84.00%), Query Frame = 1 

Query: 1   MTHGDDGGLMLPPKLAPTQGVPLRI 26
           MTHGDDGGLMLPPKLAP Q V + I
Sbjct: 342 MTHGDDGGLMLPPKLAPIQVVIIPI 366


HSP 2 Score: 75.5 bits (184), Expect = 3.9e-11
Identity = 50/134 (37.31%), Postives = 64/134 (47.76%), Query Frame = 1 

Query: 1   MTHGDDGGLMLPPKLAPTQ-------------------------------GVPLRIEIGP 60
           MTHGDD GLMLPPK+AP Q                               GVP+RIEIGP
Sbjct: 185 MTHGDDTGLMLPPKIAPIQVVTVPIWKKETEKTGVLTAASSVKEVLQAAGGVPIRIEIGP 244

Query: 61  KDVASQSVGISRRDFPAKQGKT-----------------LDEILSSHLHQAKTFRDSDKD 87
           +DV+S  V +SRR+ P K GK                  LDEI SS L +A TFRD +  
Sbjct: 245 RDVSSNCVVVSRRNIPGKAGKVFGISMEPSTLVSYGKEKLDEIQSSLLEKAVTFRDINIV 304

[Close]
BLAST of ClCG05G008300 vs. TrEMBL
Match: A0A078EIH0_BRANA (BnaA10g07390D protein OS=Brassica napus GN=BnaA10g07390D PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 3.9e-11
Identity = 50/134 (37.31%), Postives = 64/134 (47.76%), Query Frame = 1 

Query: 1   MTHGDDGGLMLPPKLAPTQ-------------------------------GVPLRIEIGP 60
           MTHGDD GLMLPPK+AP Q                               GVP+RIEIGP
Sbjct: 172 MTHGDDTGLMLPPKIAPIQVVTVPIWKKETEKTGVLTAASSVKEVLQAAGGVPIRIEIGP 231

Query: 61  KDVASQSVGISRRDFPAKQGKT-----------------LDEILSSHLHQAKTFRDSDKD 87
           +DV+S  V +SRR+ P K GK                  LDEI SS L +A TFRD +  
Sbjct: 232 RDVSSNCVVVSRRNIPGKAGKVFGISMEPSTLVSYGKEKLDEIQSSLLEKAVTFRDINIV 291

[Close]
BLAST of ClCG05G008300 vs. TrEMBL
Match: M5WP45_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa003818mg PE=3 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 2.6e-10
Identity = 49/111 (44.14%), Postives = 58/111 (52.25%), Query Frame = 1 

Query: 19  QGVPLRIEIGPKDVASQSVGISRRDFPAKQGKT-----------------LDEILSSHLH 78
           +GVPLRIEIGP+DV+SQSV +SRRD P KQGK                  LDEI SS L 
Sbjct: 405 KGVPLRIEIGPRDVSSQSVVVSRRDVPGKQGKVFGISMEPSVLEAYIKDKLDEIQSSLLE 464

Query: 79  QAKTFRDS----------------------------DKDELRVKEETEATL 85
           +A++FRDS                            DK+ELRVKEET AT+
Sbjct: 465 KAESFRDSNIVDVSSYDELKVAISQGKWARGPWSAGDKEELRVKEETGATI 515

[Close]
BLAST of ClCG05G008300 vs. TrEMBL
Match: M5WP45_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa003818mg PE=3 SV=1)

HSP 1 Score: 39.7 bits (91), Expect = 2.4e+00
Identity = 18/25 (72.00%), Postives = 20/25 (80.00%), Query Frame = 1 

Query: 1   MTHGDDGGLMLPPKLAPTQGVPLRI 26
           MTHGDD GLMLPPK+AP Q V + I
Sbjct: 333 MTHGDDTGLMLPPKIAPIQVVIIPI 357


HSP 2 Score: 71.2 bits (173), Expect = 7.4e-10
Identity = 49/111 (44.14%), Postives = 56/111 (50.45%), Query Frame = 1 

Query: 19  QGVPLRIEIGPKDVASQSVGISRRDFPAKQGKT-----------------LDEILSSHLH 78
           +GVPLRIEIGP+DVAS SV +SRRD P K+GK                  LDEI SS L 
Sbjct: 407 KGVPLRIEIGPRDVASGSVVVSRRDIPGKEGKVFGISMEPAVLEAYVKDKLDEIQSSLLQ 466

Query: 79  QAKTFRD----------------------------SDKDELRVKEETEATL 85
           +AK FRD                            SD+DELRVKEET AT+
Sbjct: 467 RAKLFRDRNILDVSSYDELKEAISQGKWARGPWSASDQDELRVKEETGATI 517

[Close]
BLAST of ClCG05G008300 vs. TAIR10
Match: AT5G52520.1 (AT5G52520.1 Class II aaRS and biotin synthetases superfamily protein)

HSP 1 Score: 62.8 bits (151), Expect = 1.3e-10
Identity = 44/111 (39.64%), Postives = 51/111 (45.95%), Query Frame = 1 

Query: 19  QGVPLRIEIGPKDVASQSVGISRRDFPAKQGKT-----------------LDEILSSHLH 78
           +G+PLRIEIGP+DV+S SV +SRRD P K GK                  LDEI +S L 
Sbjct: 402 KGIPLRIEIGPRDVSSNSVVVSRRDVPGKAGKVFGISMEPSTLVAYVKEKLDEIQTSLLE 461

Query: 79  QAKTFRD----------------------------SDKDELRVKEETEATL 85
           +A +FRD                            SD DE RVKEET AT+
Sbjct: 462 KALSFRDSNIVDVNSYAELKDAISSGKWARGPWSASDADEQRVKEETGATI 512


HSP 2 Score: 39.3 bits (90), Expect = 1.6e-03
Identity = 17/21 (80.95%), Postives = 16/21 (76.19%), Query Frame = 1 

Query: 1   MTHGDDGGLMLPPKLAPTQGV 22
           MTHGDD GLMLPPK+AP Q V
Sbjct: 330 MTHGDDTGLMLPPKIAPIQVV 350

[Close]
BLAST of ClCG05G008300 vs. NCBI nr
Match: gi|672193095|ref|XP_008775943.1| (PREDICTED: proline--tRNA ligase isoform X2 [Phoenix dactylifera])

HSP 1 Score: 95.1 bits (235), Expect = 6.9e-17
Identity = 57/129 (44.19%), Postives = 72/129 (55.81%), Query Frame = 1 

Query: 1   MTHGDDGGLMLPPKLAPTQGVPLRIEIGPKDVASQSVGISRRDFPAKQGK---------- 60
           MTHGDD GLMLPP++AP QGVPLRIE+GP+DVA++SV +SRRD P K GK          
Sbjct: 342 MTHGDDAGLMLPPRIAPIQGVPLRIEVGPRDVANRSVVVSRRDIPGKPGKDFGVSMEPSK 401

Query: 61  -------TLDEILSSHLHQAKTFRDS----------------------------DKDELR 85
                   L++I +S L +A +FRDS                            DK+EL+
Sbjct: 402 LESHVKSRLEDIQASLLQRAISFRDSNIVDVHSYEELKAVIAQGKWARGPWSAGDKEELK 461

[Close]
BLAST of ClCG05G008300 vs. NCBI nr
Match: gi|659112176|ref|XP_008456101.1| (PREDICTED: proline--tRNA ligase, partial [Cucumis melo])

HSP 1 Score: 79.7 bits (195), Expect = 3.0e-12
Identity = 54/111 (48.65%), Postives = 59/111 (53.15%), Query Frame = 1 

Query: 19  QGVPLRIEIGPKDVASQSVGISRRDFPAKQGK-----------------TLDEILSSHLH 78
           +GVPLRIEIGPKDVAS+SV ISRRD P KQGK                 TLDEI SS L 
Sbjct: 403 KGVPLRIEIGPKDVASKSVVISRRDIPGKQGKVFGISMEPSVLEAYVKETLDEIQSSLLQ 462

Query: 79  QAKTFRD----------------------------SDKDELRVKEETEATL 85
           QA+TFRD                            SD+DELRVKEET AT+
Sbjct: 463 QARTFRDSNIVDVSSYNELKEAISEGKWARGPWSASDQDELRVKEETGATI 513

[Close]
BLAST of ClCG05G008300 vs. NCBI nr
Match: gi|659112176|ref|XP_008456101.1| (PREDICTED: proline--tRNA ligase, partial [Cucumis melo])

HSP 1 Score: 43.5 bits (101), Expect = 2.4e-01
Identity = 20/25 (80.00%), Postives = 21/25 (84.00%), Query Frame = 1 

Query: 1   MTHGDDGGLMLPPKLAPTQGVPLRI 26
           MTHGDDGGLMLPPKLAP Q V + I
Sbjct: 331 MTHGDDGGLMLPPKLAPIQVVIIPI 355


HSP 2 Score: 77.8 bits (190), Expect = 1.1e-11
Identity = 53/110 (48.18%), Postives = 57/110 (51.82%), Query Frame = 1 

Query: 19  QGVPLRIEIGPKDVASQSVGISRRDFPAKQGKT-----------------LDEILSSHLH 78
           +GVPLRIEIGPKDVAS+SV ISRRD P KQGK                  LDEI SS L 
Sbjct: 414 KGVPLRIEIGPKDVASKSVVISRRDIPGKQGKVFGISMEPSVLEAYVKERLDEIQSSLLQ 473

Query: 79  QAKTFRD----------------------------SDKDELRVKEETEAT 84
           QA+TFRD                            SD+DELRVKEET AT
Sbjct: 474 QARTFRDSNIVDVSSYNELKEAISEGKWARGPWSASDQDELRVKEETRAT 523

[Close]
BLAST of ClCG05G008300 vs. NCBI nr
Match: gi|778680145|ref|XP_004149956.2| (PREDICTED: proline--tRNA ligase [Cucumis sativus])

HSP 1 Score: 43.5 bits (101), Expect = 2.4e-01
Identity = 20/25 (80.00%), Postives = 21/25 (84.00%), Query Frame = 1 

Query: 1   MTHGDDGGLMLPPKLAPTQGVPLRI 26
           MTHGDDGGLMLPPKLAP Q V + I
Sbjct: 342 MTHGDDGGLMLPPKLAPIQVVIIPI 366


HSP 2 Score: 75.5 bits (184), Expect = 5.7e-11
Identity = 50/134 (37.31%), Postives = 64/134 (47.76%), Query Frame = 1 

Query: 1   MTHGDDGGLMLPPKLAPTQ-------------------------------GVPLRIEIGP 60
           MTHGDD GLMLPPK+AP Q                               GVP+RIEIGP
Sbjct: 172 MTHGDDTGLMLPPKIAPIQVVTVPIWKKETEKTGVLTAASSVKEVLQAAGGVPIRIEIGP 231

Query: 61  KDVASQSVGISRRDFPAKQGKT-----------------LDEILSSHLHQAKTFRDSDKD 87
           +DV+S  V +SRR+ P K GK                  LDEI SS L +A TFRD +  
Sbjct: 232 RDVSSNCVVVSRRNIPGKAGKVFGISMEPSTLVSYGKEKLDEIQSSLLEKAVTFRDINIV 291

[Close]
BLAST of ClCG05G008300 vs. NCBI nr
Match: gi|645266460|ref|XP_008238621.1| (PREDICTED: proline--tRNA ligase-like [Prunus mume])

HSP 1 Score: 74.3 bits (181), Expect = 1.3e-10
Identity = 50/111 (45.05%), Postives = 58/111 (52.25%), Query Frame = 1 

Query: 19  QGVPLRIEIGPKDVASQSVGISRRDFPAKQGKT-----------------LDEILSSHLH 78
           +GVPLRIEIGP+DV+SQSV +SRRD P KQGK                  LDEI SS L 
Sbjct: 405 KGVPLRIEIGPRDVSSQSVVVSRRDVPGKQGKVFGISMEPSVLEAYIKDKLDEIQSSLLE 464

Query: 79  QAKTFRDS----------------------------DKDELRVKEETEATL 85
           +AK+FRDS                            DK+ELRVKEET AT+
Sbjct: 465 KAKSFRDSNIVDVSSYDELKVAISQGKWARGPWSAGDKEELRVKEETGATI 515

The following BLAST results are available for this feature:
BLAST of ClCG05G008300 vs. Swiss-Prot
Match NameE-valueIdentityDescription
SYPM_ARATH2.4e-0939.64Proline--tRNA ligase, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=OVA... [more]
SYP_ROSS14.2e-0631.78Proline--tRNA ligase OS=Roseiflexus sp. (strain RS-1) GN=proS PE=3 SV=1[more]
SYP_CHLAD7.2e-0632.71Proline--tRNA ligase OS=Chloroflexus aggregans (strain MD-66 / DSM 9485) GN=proS... [more]
SYP_CHLSY7.2e-0630.84Proline--tRNA ligase OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / ... [more]
SYP_CHLAA7.2e-0630.84Proline--tRNA ligase OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / ... [more]
BLAST of ClCG05G008300 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L6I6_CUCSA7.9e-1248.18Uncharacterized protein OS=Cucumis sativus GN=Csa_3G213510 PE=3 SV=1[more]
A0A0A0L6I6_CUCSA1.7e-0180.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G213510 PE=3 SV=1[more]
A0A078EIH0_BRANA3.9e-1137.31BnaA10g07390D protein OS=Brassica napus GN=BnaA10g07390D PE=4 SV=1[more]
M5WP45_PRUPE2.6e-1044.14Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa003818mg PE=3 SV=1[more]
M5WP45_PRUPE2.4e+0072.00Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa003818mg PE=3 SV=1[more]
BLAST of ClCG05G008300 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G52520.11.3e-1039.64 Class II aaRS and biotin synthetases superfamily protein[more]
BLAST of ClCG05G008300 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|672193095|ref|XP_008775943.1|6.9e-1744.19PREDICTED: proline--tRNA ligase isoform X2 [Phoenix dactylifera][more]
gi|659112176|ref|XP_008456101.1|3.0e-1248.65PREDICTED: proline--tRNA ligase, partial [Cucumis melo][more]
gi|659112176|ref|XP_008456101.1|2.4e-0180.00PREDICTED: proline--tRNA ligase, partial [Cucumis melo][more]
gi|778680145|ref|XP_004149956.2|2.4e-0180.00PREDICTED: proline--tRNA ligase [Cucumis sativus][more]
gi|645266460|ref|XP_008238621.1|1.3e-1045.05PREDICTED: proline--tRNA ligase-like [Prunus mume][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR004154Anticodon-bd
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009987 cellular process
biological_process GO:0044699 single-organism process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG05G008300.1ClCG05G008300.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004154Anticodon-bindingGENE3DG3DSA:3.40.50.800coord: 18..58
score: 9.
IPR004154Anticodon-bindingunknownSSF52954Class II aaRS ABD-relatedcoord: 18..62
score: 1.1

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG05G008300Silver-seed gourdcarwcgB0475
ClCG05G008300Silver-seed gourdcarwcgB0690
ClCG05G008300Silver-seed gourdcarwcgB0715
ClCG05G008300Silver-seed gourdcarwcgB0965
ClCG05G008300Cucumber (Chinese Long) v3cucwcgB225
ClCG05G008300Cucumber (Chinese Long) v3cucwcgB245
ClCG05G008300Cucumber (Chinese Long) v3cucwcgB416
ClCG05G008300Watermelon (97103) v2wcgwmbB229
ClCG05G008300Watermelon (97103) v2wcgwmbB231
ClCG05G008300Wax gourdwcgwgoB440
ClCG05G008300Watermelon (Charleston Gray)wcgwcgB154
ClCG05G008300Cucumber (Gy14) v1cgywcgB152
ClCG05G008300Cucumber (Gy14) v1cgywcgB449
ClCG05G008300Cucumber (Gy14) v1cgywcgB521
ClCG05G008300Cucurbita maxima (Rimu)cmawcgB266
ClCG05G008300Cucurbita maxima (Rimu)cmawcgB296
ClCG05G008300Cucurbita maxima (Rimu)cmawcgB365
ClCG05G008300Cucurbita maxima (Rimu)cmawcgB559
ClCG05G008300Cucurbita moschata (Rifu)cmowcgB216
ClCG05G008300Cucurbita moschata (Rifu)cmowcgB256
ClCG05G008300Cucurbita moschata (Rifu)cmowcgB290
ClCG05G008300Cucurbita moschata (Rifu)cmowcgB359
ClCG05G008300Cucurbita moschata (Rifu)cmowcgB557
ClCG05G008300Wild cucumber (PI 183967)cpiwcgB226
ClCG05G008300Wild cucumber (PI 183967)cpiwcgB246
ClCG05G008300Cucumber (Chinese Long) v2cuwcgB222
ClCG05G008300Cucumber (Chinese Long) v2cuwcgB238
ClCG05G008300Melon (DHL92) v3.5.1mewcgB427
ClCG05G008300Melon (DHL92) v3.5.1mewcgB429
ClCG05G008300Melon (DHL92) v3.5.1mewcgB430
ClCG05G008300Watermelon (97103) v1wcgwmB286
ClCG05G008300Watermelon (97103) v1wcgwmB291
ClCG05G008300Cucurbita pepo (Zucchini)cpewcgB046
ClCG05G008300Cucurbita pepo (Zucchini)cpewcgB173
ClCG05G008300Cucurbita pepo (Zucchini)cpewcgB207
ClCG05G008300Cucurbita pepo (Zucchini)cpewcgB556
ClCG05G008300Cucurbita pepo (Zucchini)cpewcgB678
ClCG05G008300Bottle gourd (USVL1VR-Ls)lsiwcgB334
ClCG05G008300Bottle gourd (USVL1VR-Ls)lsiwcgB336
ClCG05G008300Cucumber (Gy14) v2cgybwcgB203
ClCG05G008300Cucumber (Gy14) v2cgybwcgB221
ClCG05G008300Cucumber (Gy14) v2cgybwcgB360
ClCG05G008300Melon (DHL92) v3.6.1medwcgB416
ClCG05G008300Melon (DHL92) v3.6.1medwcgB428
ClCG05G008300Melon (DHL92) v3.6.1medwcgB429