ClCG05G007590.1 (mRNA) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG05G007590.1
Type	mRNA
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Mitochondrial metalloendopeptidase OMA1
Location	CG_Chr05 : 8024913 .. 8025463 (+)
Sequence length	162

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGTAGATTACACCGGTTTGCTTTTGATTGCGTCTGCTGGATACGACCCTAGGAATGCACCGACAGTATGCGAGAAGTTGGGTAAGATCTCCGGTGAGTCTCACCTGAGTGATTATCTTTGTACTCATCCATCTGGAAAGAAGTGAGTTGAGTTGGTAGCTCAAGCAAAGGTTATGGAGGAAGCAGTTACTGCTTACAGAGAAGTAAGACCGTACCGGACGTGGGGTTGAAAATGAAAGCGCCCTATAAGACTCTTAAAACTACCTTTAGAAACTCAAAGTGAGGTGATACTGATTAGCAAGAGAAAGGTCTCCCTCATATATTGTATTAATATTAAAGCATGATCATCTTACTGACTTTTTGGTCGTTAATTTGGGTTCACGAGAGGGTGATAAACCATCCTTTGGTTGGTGGTTTTTCTTTGGCATAGCTCTACCCTGTTTCACCATAAGAAATGTTTATGTTGGAGGCTATTGATATCATGAGCAACTTGGGTGCATGATTGAAACTTGTTTATTTTGTTAACATCAGGTCTGCCTTGCTGCAC

mRNA sequence

ATGGAAGTAGATTACACCGGTTTGCTTTTGATTGCGTCTGCTGGATACGACCCTAGGAATGCACCGACAGTATGCGAGAAGTTGGGTAAGATCTCCGGTGAGTCTCACCTGAGTGATTATCTTTGTACTCATCCATCTGGAAAGAAGTCTGCCTTGCTGCAC

Coding sequence (CDS)

ATGGAAGTAGATTACACCGGTTTGCTTTTGATTGCGTCTGCTGGATACGACCCTAGGAATGCACCGACAGTATGCGAGAAGTTGGGTAAGATCTCCGGTGAGTCTCACCTGAGTGATTATCTTTGTACTCATCCATCTGGAAAGAAGTCTGCCTTGCTGCAC

Protein sequence

MEVDYTGLLLIASAGYDPRNAPTVCEKLGKISGESHLSDYLCTHPSGKKSALLH

Homology

[Close]

BLAST of ClCG05G007590.1 vs. TrEMBL
Match: M5XRL4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa005730mg PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 1.8e-13
Identity = 41/53 (77.36%), Postives = 44/53 (83.02%), Query Frame = 1


Query: 1   MEVDYTGLLLIASAGYDPRNAPTVCEKLGKISGESHLSDYLCTHPSGKKSALL 54
           +E D+ GLLL+ASAGYDPR APTV EKLGKISGES L DYL THPSGKK A L
Sbjct: 367 IEADHIGLLLVASAGYDPRVAPTVYEKLGKISGESALRDYLSTHPSGKKRAQL 419

[Close]

BLAST of ClCG05G007590.1 vs. TrEMBL
Match: A0A0V0IEA5_SOLCH (Putative mitochondrial metalloendopeptidase OMA1-like OS=Solanum chacoense PE=3 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 3.1e-13
Identity = 41/53 (77.36%), Postives = 44/53 (83.02%), Query Frame = 1


Query: 1   MEVDYTGLLLIASAGYDPRNAPTVCEKLGKISGESHLSDYLCTHPSGKKSALL 54
           ME DY GLLL+ASAGY+PR AP+V EKLGKISGES L DYL THPSGKK A L
Sbjct: 358 MEADYIGLLLMASAGYNPRIAPSVYEKLGKISGESALRDYLSTHPSGKKRAQL 410

[Close]

BLAST of ClCG05G007590.1 vs. TrEMBL
Match: M1D270_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400031017 PE=3 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 3.1e-13
Identity = 41/53 (77.36%), Postives = 44/53 (83.02%), Query Frame = 1


Query: 1   MEVDYTGLLLIASAGYDPRNAPTVCEKLGKISGESHLSDYLCTHPSGKKSALL 54
           ME DY GLLL+ASAGY+PR AP+V EKLGKISGES L DYL THPSGKK A L
Sbjct: 358 MEADYIGLLLMASAGYNPRIAPSVYEKLGKISGESALRDYLSTHPSGKKRAQL 410

[Close]

BLAST of ClCG05G007590.1 vs. TrEMBL
Match: W9S9F8_9ROSA (Mitochondrial metalloendopeptidase OMA1 OS=Morus notabilis GN=L484_012957 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 3.1e-13
Identity = 40/53 (75.47%), Postives = 43/53 (81.13%), Query Frame = 1


Query: 1   MEVDYTGLLLIASAGYDPRNAPTVCEKLGKISGESHLSDYLCTHPSGKKSALL 54
           ME DY GLLLIASAGYDPR AP V EKLGK++G+S L DYL THPSGKK A L
Sbjct: 368 MEADYIGLLLIASAGYDPRVAPKVYEKLGKVTGDSKLRDYLSTHPSGKKRAQL 420

[Close]

BLAST of ClCG05G007590.1 vs. TrEMBL
Match: K4BEC3_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=3 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 3.1e-13
Identity = 41/53 (77.36%), Postives = 44/53 (83.02%), Query Frame = 1


Query: 1   MEVDYTGLLLIASAGYDPRNAPTVCEKLGKISGESHLSDYLCTHPSGKKSALL 54
           ME DY GLLL+ASAGY+PR AP+V EKLGKISGES L DYL THPSGKK A L
Sbjct: 321 MEADYIGLLLMASAGYNPRIAPSVYEKLGKISGESALRDYLSTHPSGKKRAQL 373

[Close]

BLAST of ClCG05G007590.1 vs. TAIR10
Match: AT5G51740.1 (AT5G51740.1 Peptidase family M48 family protein)

HSP 1 Score: 74.7 bits (182), Expect = 1.9e-14
Identity = 37/53 (69.81%), Postives = 41/53 (77.36%), Query Frame = 1


Query: 1   MEVDYTGLLLIASAGYDPRNAPTVCEKLGKISGESHLSDYLCTHPSGKKSALL 54
           +E DY GLLL+ASAGYDPR APTV EKLGK+ G++ L DYL THPSGKK + L
Sbjct: 363 IEADYIGLLLLASAGYDPRVAPTVYEKLGKLGGDA-LGDYLSTHPSGKKRSKL 414

[Close]

BLAST of ClCG05G007590.1 vs. NCBI nr
Match: gi|645257270|ref|XP_008234337.1| (PREDICTED: uncharacterized protein LOC103333298 [Prunus mume])

HSP 1 Score: 82.4 bits (202), Expect = 2.6e-13
Identity = 41/53 (77.36%), Postives = 44/53 (83.02%), Query Frame = 1


Query: 1   MEVDYTGLLLIASAGYDPRNAPTVCEKLGKISGESHLSDYLCTHPSGKKSALL 54
           +E D+ GLLL+ASAGYDPR APTV EKLGKISGES L DYL THPSGKK A L
Sbjct: 348 IEADHIGLLLVASAGYDPRVAPTVYEKLGKISGESALRDYLSTHPSGKKRAQL 400

[Close]

BLAST of ClCG05G007590.1 vs. NCBI nr
Match: gi|596049181|ref|XP_007220466.1| (hypothetical protein PRUPE_ppa005730mg [Prunus persica])

HSP 1 Score: 82.4 bits (202), Expect = 2.6e-13
Identity = 41/53 (77.36%), Postives = 44/53 (83.02%), Query Frame = 1


Query: 1   MEVDYTGLLLIASAGYDPRNAPTVCEKLGKISGESHLSDYLCTHPSGKKSALL 54
           +E D+ GLLL+ASAGYDPR APTV EKLGKISGES L DYL THPSGKK A L
Sbjct: 367 IEADHIGLLLVASAGYDPRVAPTVYEKLGKISGESALRDYLSTHPSGKKRAQL 419

[Close]

BLAST of ClCG05G007590.1 vs. NCBI nr
Match: gi|970019872|ref|XP_015071140.1| (PREDICTED: uncharacterized protein LOC107015401 [Solanum pennellii])

HSP 1 Score: 81.6 bits (200), Expect = 4.5e-13
Identity = 41/53 (77.36%), Postives = 44/53 (83.02%), Query Frame = 1


Query: 1   MEVDYTGLLLIASAGYDPRNAPTVCEKLGKISGESHLSDYLCTHPSGKKSALL 54
           ME DY GLLL+ASAGY+PR AP+V EKLGKISGES L DYL THPSGKK A L
Sbjct: 358 MEADYIGLLLMASAGYNPRIAPSVYEKLGKISGESALRDYLSTHPSGKKRAQL 410

[Close]

BLAST of ClCG05G007590.1 vs. NCBI nr
Match: gi|703147520|ref|XP_010109081.1| (Mitochondrial metalloendopeptidase OMA1 [Morus notabilis])

HSP 1 Score: 81.6 bits (200), Expect = 4.5e-13
Identity = 40/53 (75.47%), Postives = 43/53 (81.13%), Query Frame = 1


Query: 1   MEVDYTGLLLIASAGYDPRNAPTVCEKLGKISGESHLSDYLCTHPSGKKSALL 54
           ME DY GLLLIASAGYDPR AP V EKLGK++G+S L DYL THPSGKK A L
Sbjct: 368 MEADYIGLLLIASAGYDPRVAPKVYEKLGKVTGDSKLRDYLSTHPSGKKRAQL 420

[Close]

BLAST of ClCG05G007590.1 vs. NCBI nr
Match: gi|565362624|ref|XP_006348046.1| (PREDICTED: uncharacterized protein LOC102601487 [Solanum tuberosum])

HSP 1 Score: 81.6 bits (200), Expect = 4.5e-13
Identity = 41/53 (77.36%), Postives = 44/53 (83.02%), Query Frame = 1


Query: 1   MEVDYTGLLLIASAGYDPRNAPTVCEKLGKISGESHLSDYLCTHPSGKKSALL 54
           ME DY GLLL+ASAGY+PR AP+V EKLGKISGES L DYL THPSGKK A L
Sbjct: 358 MEADYIGLLLMASAGYNPRIAPSVYEKLGKISGESALRDYLSTHPSGKKRAQL 410

The following BLAST results are available for this feature:

BLAST of ClCG05G007590.1 vs. TrEMBL


Match Name	E-value	Identity	Description
M5XRL4_PRUPE	1.8e-13	77.36	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa005730mg PE=4 SV=1	[more]
A0A0V0IEA5_SOLCH	3.1e-13	77.36	Putative mitochondrial metalloendopeptidase OMA1-like OS=Solanum chacoense PE=3 ...	[more]
M1D270_SOLTU	3.1e-13	77.36	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400031017 PE=3 SV=1	[more]
W9S9F8_9ROSA	3.1e-13	75.47	Mitochondrial metalloendopeptidase OMA1 OS=Morus notabilis GN=L484_012957 PE=4 S...	[more]
K4BEC3_SOLLC	3.1e-13	77.36	Uncharacterized protein OS=Solanum lycopersicum PE=3 SV=1	[more]

BLAST of ClCG05G007590.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G51740.1	1.9e-14	69.81	Peptidase family M48 family protein	[more]

BLAST of ClCG05G007590.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|645257270\|ref\|XP_008234337.1\|	2.6e-13	77.36	PREDICTED: uncharacterized protein LOC103333298 [Prunus mume]	[more]
gi\|596049181\|ref\|XP_007220466.1\|	2.6e-13	77.36	hypothetical protein PRUPE_ppa005730mg [Prunus persica]	[more]
gi\|970019872\|ref\|XP_015071140.1\|	4.5e-13	77.36	PREDICTED: uncharacterized protein LOC107015401 [Solanum pennellii]	[more]
gi\|703147520\|ref\|XP_010109081.1\|	4.5e-13	75.47	Mitochondrial metalloendopeptidase OMA1 [Morus notabilis]	[more]
gi\|565362624\|ref\|XP_006348046.1\|	4.5e-13	77.36	PREDICTED: uncharacterized protein LOC102601487 [Solanum tuberosum]	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006508	proteolysis
cellular_component	GO:0016020	membrane
molecular_function	GO:0004222	metalloendopeptidase activity

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
ClCG05G007590	ClCG05G007590	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
ClCG05G007590.1	ClCG05G007590.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG05G007590.1.cds1	ClCG05G007590.1.cds1	CDS
ClCG05G007590.1.cds2	ClCG05G007590.1.cds2	CDS