ClCG05G006290.1 (mRNA) Watermelon (Charleston Gray)

NameClCG05G006290.1
TypemRNA
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionEthylene-responsive transcription factor 3
LocationCG_Chr05 : 6260333 .. 6261948 (+)
Sequence length1026
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CCACACGCTCCTTTTTCTCAAATTCTCTCCCTCTCAACTTCAACCAACATGTGCGGCGGAGCTATCATCTCAGATTACGTCGACAACCTCCTCTGGCCTCACCTCGACACCACCTTCTCTGACCTCCTCGGCCTCGACCTCGACCTTGACCTCGACCTTTCCACCCAAAACTACCCCTTCAACAACACTCCTTCCATTGTTGTAGAGACCCCCAAACAACTCCCTCAAGGTACACATACACTACTCTCTCTACTTTCTAAAATTTTTTTGTGTTCTTTTCCTTCCAATCTCTAATTTAACTAATTTTGCATCATCCATAAATATTTATAGGAATTTGAACTTTTTAAAAAATGAGAAGAAAAAATTCCTGATTGTTTGAAAATTGGGTAGAGGTTTAACAAGTAGAAATGAATAATAATTGAGGAAATGACATATAAGAGTCTATTGTGATTTTTTCAAAACCTTTTTATTATGGCGATTAACATTGTTACTATGAATTTGTATAAAGATGACATTATAAGAGTTTATTGTAAGAATATTATTATTATTATTTAACTAATTTCAATAAAAATTAACTTTAAATATTCTCAAATCAAATTACTACATGTACAATTAATTAAAAGTAAAGAGACTAAAATTGAAAAAGCTGGAAATTACATAGATTATTATAATATTTTAATCAATTTAAGAGTGATTCATCAACTTTAAAAGTGGAATAATAGAGAGATTTTCATTTTAATTAAAAAATAGGATTTAATGTTTTGTGATAAGAAATGGTTAAAGTAGTAATTGGGTATTATTATTACTGTGAATATTTAGTGAAAAGTGAGAAAGTAGAAGGAAGTGAAGCAGCCGGAAGTGCAATGAAGAAGACTAAAAAGGTTCGGAAAAGCAAATATAGAGGGATCAGGCAGCGACCATGGGGAAAATGGGCTGCCGAGATTCGAGACCCACAAAAGGGACTACGTGTTTGGCTCGGTACCTACAACACTGCCGAAGAAGCAGCCAGAGCCTATGACCAAGCCGCCATAAGAATCAGAGGCAAAAAGGCCAAACTCAACTTCACTCAACCCCCACCGCTGCCGCTACCCTCACCACCACCACAACAGCTCCCCACCACCTCCACCCCCATCGACATCCAACTCAAACACCAAATCTCGTCTTTGGAATCATTCCTCGGTCTCGACCCCTCACTGCCAGTGGAACCCATGGCAGACCCCTGGTGGGTGGATGACCTTCTCATATATCAACAACAAAACCTCCAACTCTAACTCTAAACACCCAAAATAAAACTAATAATAATACTTACCTCGTTTTCTACTAGTAATAATCTCCTACTCATCACCCTTAAAAATTTGACACTAAAAAAAAGAGTGAAACAAATGTCAAATTTTTTTACAAGTGTAATTTAGTAGGAAGATTATATTACTAACGAGTCAATAAGTAAGTATTATTTATTAGAAAAATCCCAACTTTGGTTAATATAAGAAAGGGATTTGTGTAGCTCGCTTTAGTTGGGTTTTGGTGTACACATTTTAGTTATAATATGGTGTGTGTTTATGACCTTTGTGTTGTGGATCAGACACAAGTTTATAAATGTTAATTAAGGTTTTTTG

mRNA sequence

CCACACGCTCCTTTTTCTCAAATTCTCTCCCTCTCAACTTCAACCAACATGTGCGGCGGAGCTATCATCTCAGATTACGTCGACAACCTCCTCTGGCCTCACCTCGACACCACCTTCTCTGACCTCCTCGGCCTCGACCTCGACCTTGACCTCGACCTTTCCACCCAAAACTACCCCTTCAACAACACTCCTTCCATTGTTGTAGAGACCCCCAAACAACTCCCTCAAGTGAAAAGTGAGAAAGTAGAAGGAAGTGAAGCAGCCGGAAGTGCAATGAAGAAGACTAAAAAGGTTCGGAAAAGCAAATATAGAGGGATCAGGCAGCGACCATGGGGAAAATGGGCTGCCGAGATTCGAGACCCACAAAAGGGACTACGTGTTTGGCTCGGTACCTACAACACTGCCGAAGAAGCAGCCAGAGCCTATGACCAAGCCGCCATAAGAATCAGAGGCAAAAAGGCCAAACTCAACTTCACTCAACCCCCACCGCTGCCGCTACCCTCACCACCACCACAACAGCTCCCCACCACCTCCACCCCCATCGACATCCAACTCAAACACCAAATCTCGTCTTTGGAATCATTCCTCGGTCTCGACCCCTCACTGCCAGTGGAACCCATGGCAGACCCCTGGTGGGTGGATGACCTTCTCATATATCAACAACAAAACCTCCAACTCTAACTCTAAACACCCAAAATAAAACTAATAATAATACTTACCTCGTTTTCTACTAGTAATAATCTCCTACTCATCACCCTTAAAAATTTGACACTAAAAAAAAGAGTGAAACAAATGTCAAATTTTTTTACAAGTGTAATTTAGTAGGAAGATTATATTACTAACGAGTCAATAAGTAAGTATTATTTATTAGAAAAATCCCAACTTTGGTTAATATAAGAAAGGGATTTGTGTAGCTCGCTTTAGTTGGGTTTTGGTGTACACATTTTAGTTATAATATGGTGTGTGTTTATGACCTTTGTGTTGTGGATCAGACACAAGTTTATAAATGTTAATTAAGGTTTTTTG

Coding sequence (CDS)

ATGTGCGGCGGAGCTATCATCTCAGATTACGTCGACAACCTCCTCTGGCCTCACCTCGACACCACCTTCTCTGACCTCCTCGGCCTCGACCTCGACCTTGACCTCGACCTTTCCACCCAAAACTACCCCTTCAACAACACTCCTTCCATTGTTGTAGAGACCCCCAAACAACTCCCTCAAGTGAAAAGTGAGAAAGTAGAAGGAAGTGAAGCAGCCGGAAGTGCAATGAAGAAGACTAAAAAGGTTCGGAAAAGCAAATATAGAGGGATCAGGCAGCGACCATGGGGAAAATGGGCTGCCGAGATTCGAGACCCACAAAAGGGACTACGTGTTTGGCTCGGTACCTACAACACTGCCGAAGAAGCAGCCAGAGCCTATGACCAAGCCGCCATAAGAATCAGAGGCAAAAAGGCCAAACTCAACTTCACTCAACCCCCACCGCTGCCGCTACCCTCACCACCACCACAACAGCTCCCCACCACCTCCACCCCCATCGACATCCAACTCAAACACCAAATCTCGTCTTTGGAATCATTCCTCGGTCTCGACCCCTCACTGCCAGTGGAACCCATGGCAGACCCCTGGTGGGTGGATGACCTTCTCATATATCAACAACAAAACCTCCAACTCTAA

Protein sequence

MCGGAIISDYVDNLLWPHLDTTFSDLLGLDLDLDLDLSTQNYPFNNTPSIVVETPKQLPQVKSEKVEGSEAAGSAMKKTKKVRKSKYRGIRQRPWGKWAAEIRDPQKGLRVWLGTYNTAEEAARAYDQAAIRIRGKKAKLNFTQPPPLPLPSPPPQQLPTTSTPIDIQLKHQISSLESFLGLDPSLPVEPMADPWWVDDLLIYQQQNLQL
BLAST of ClCG05G006290.1 vs. Swiss-Prot
Match: RAP23_ARATH (Ethylene-responsive transcription factor RAP2-3 OS=Arabidopsis thaliana GN=RAP2-3 PE=1 SV=2)

HSP 1 Score: 136.7 bits (343), Expect = 2.9e-31
Identity = 101/254 (39.76%), Postives = 124/254 (48.82%), Query Frame = 1

Query: 1   MCGGAIISDYVDNLLWPHLDTTFSDLLGLDLDLDLDLSTQN--YPFNNTPSIVVETPKQL 60
           MCGGAIISDY   +           L   +L  +LD S  +  + F +T  +    P   
Sbjct: 1   MCGGAIISDYAPLVT----KAKGRKLTAEELWSELDASAADDFWGFYSTSKL---HPTNQ 60

Query: 61  PQVKSEKVEGSEAAGSAMKKTKKVRKSKYRGIRQRPWGKWAAEIRDPQKGLRVWLGTYNT 120
             VK E V+  +A     ++    RK+ YRGIR+RPWGKWAAEIRDP+KG+RVWLGT+NT
Sbjct: 61  VNVKEEAVKKEQATEPGKRRK---RKNVYRGIRKRPWGKWAAEIRDPRKGVRVWLGTFNT 120

Query: 121 AEEAARAYDQAAIRIRGKKAKLNFTQ---PPP---LPLPSPP-----------------P 180
           AEEAA AYD AA +IRG KAKLNF     PPP    P PS P                  
Sbjct: 121 AEEAAMAYDVAAKQIRGDKAKLNFPDLHHPPPPNYTPPPSSPRSTDQPPAKKVCVVSQSE 180

Query: 181 QQLPTTSTPI--------------------DIQLKHQISSLESFLGLDPSLPVEPM---- 202
            +L   S P+                    D  LK QISSLESFL LD +   +P     
Sbjct: 181 SELSQPSFPVECIGFGNGDEFQNLSYGFEPDYDLKQQISSLESFLELDGNTAEQPSQLDE 240

BLAST of ClCG05G006290.1 vs. Swiss-Prot
Match: RA212_ARATH (Ethylene-responsive transcription factor RAP2-12 OS=Arabidopsis thaliana GN=RAP2-12 PE=1 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 1.6e-29
Identity = 86/238 (36.13%), Postives = 113/238 (47.48%), Query Frame = 1

Query: 1   MCGGAIISDYV---------DNLLWPHLDTT---------------------------FS 60
           MCGGAIISD++            +WP L                              F 
Sbjct: 1   MCGGAIISDFIPPPRSRRVTSEFIWPDLKKNLKGSKKSSKNRSNFFDFDAEFEADFQGFK 60

Query: 61  DLLGLDLDLDLDLS-----TQNYPFNNTPSIVVETPKQLPQVKSEKVEGSEAAGSAMKKT 120
           D   +D D D D+       + + F +TP   V    +   V  +KV G +  G A K  
Sbjct: 61  DDSSIDCDDDFDVGDVFADVKPFVFTSTPKPAVSAAAE-GSVFGKKVTGLD--GDAEKSA 120

Query: 121 KKVRKSKYRGIRQRPWGKWAAEIRDPQKGLRVWLGTYNTAEEAARAYDQAAIRIRGKKAK 176
            + RK++YRGIRQRPWGKWAAEIRDP++G R+WLGT+ TAEEAARAYD AA RIRG KAK
Sbjct: 121 NRKRKNQYRGIRQRPWGKWAAEIRDPREGARIWLGTFKTAEEAARAYDAAARRIRGSKAK 180

BLAST of ClCG05G006290.1 vs. Swiss-Prot
Match: RAP22_ARATH (Ethylene-responsive transcription factor RAP2-2 OS=Arabidopsis thaliana GN=RAP2-2 PE=1 SV=2)

HSP 1 Score: 126.3 bits (316), Expect = 3.9e-28
Identity = 82/204 (40.20%), Postives = 101/204 (49.51%), Query Frame = 1

Query: 1   MCGGAIISDYV---------DNLLWPHLDTTF----------SDLLGLDLDLDLDLS--- 60
           MCGGAIISD++         +  +WP L              SD   LD D + D     
Sbjct: 1   MCGGAIISDFIPPPRSLRVTNEFIWPDLKNKVKASKKRSNKRSDFFDLDDDFEADFQGFK 60

Query: 61  ---------TQNYPFNNTPSIVVETPKQLPQV----------KSEKVEGSEAAGSAMKKT 120
                      +   N  P +   T K +              +   +  E+A  A K +
Sbjct: 61  DDSAFDCEDDDDVFVNVKPFVFTATTKPVASAFVSTGIYLVGSAYAKKTVESAEQAEKSS 120

Query: 121 KKVRKSKYRGIRQRPWGKWAAEIRDPQKGLRVWLGTYNTAEEAARAYDQAAIRIRGKKAK 164
           K+ RK++YRGIRQRPWGKWAAEIRDP+KG R WLGT++TAEEAARAYD AA RIRG KAK
Sbjct: 121 KRKRKNQYRGIRQRPWGKWAAEIRDPRKGSREWLGTFDTAEEAARAYDAAARRIRGTKAK 180

BLAST of ClCG05G006290.1 vs. Swiss-Prot
Match: ERF1_ORYSJ (Ethylene-responsive transcription factor 1 OS=Oryza sativa subsp. japonica GN=EREBP1 PE=1 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 4.7e-26
Identity = 54/74 (72.97%), Postives = 62/74 (83.78%), Query Frame = 1

Query: 73  GSAMKKTKKVRKSKYRGIRQRPWGKWAAEIRDPQKGLRVWLGTYNTAEEAARAYDQAAIR 132
           G A K  K+ RK+++RGIRQRPWGKWAAEIRDP+KG+RVWLGT+N+AEEAARAYD  A R
Sbjct: 106 GPAAKSAKRKRKNQFRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNSAEEAARAYDAEARR 165

Query: 133 IRGKKAKLNFTQPP 147
           IRGKKAK+NF + P
Sbjct: 166 IRGKKAKVNFPEAP 179

BLAST of ClCG05G006290.1 vs. Swiss-Prot
Match: ERF71_ARATH (Ethylene-responsive transcription factor ERF071 OS=Arabidopsis thaliana GN=ERF071 PE=2 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 1.4e-25
Identity = 72/155 (46.45%), Postives = 87/155 (56.13%), Query Frame = 1

Query: 55  PKQLPQVKSEKVEGSEAAGSAMKKTKKVRKSKYRGIRQRPWGKWAAEIRDPQKGLRVWLG 114
           P QL  V S K +    + S  +  K+ RK+ YRGIRQRPWGKWAAEIRDP KG+RVWLG
Sbjct: 19  PSQLGSVSSRK-KRKPVSVSEERDGKRERKNLYRGIRQRPWGKWAAEIRDPSKGVRVWLG 78

Query: 115 TYNTAEEAARAYDQAAIRIRGKKAKLNF--TQPPPLPLPSPPPQQLPTTSTPIDIQLKHQ 174
           T+ TA+EAARAYD AAI+IRG+KAKLNF  TQ        P   Q    S      L   
Sbjct: 79  TFKTADEAARAYDVAAIKIRGRKAKLNFPNTQVEEEADTKPGGNQNELISENQVESLSED 138

Query: 175 ISSLESFLGLDPSLPVEPMADPWWVDDLLIYQQQN 208
           + +LE ++     +PV        + +L  YQ  N
Sbjct: 139 LMALEDYMRF-YQIPVADDQSATDIGNLWSYQDSN 171

BLAST of ClCG05G006290.1 vs. TrEMBL
Match: A0A0A0L7Z6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G164580 PE=4 SV=1)

HSP 1 Score: 322.4 bits (825), Expect = 4.1e-85
Identity = 173/231 (74.89%), Postives = 181/231 (78.35%), Query Frame = 1

Query: 1   MCGGAIISDYV-------DNLLWPHLDTTFSDLLGLDLDLDLDLSTQNYPFNNT--PSIV 60
           MCGGAIISDYV       DNLLWP LDTTFSDLLGLDL       TQNYPFNNT  P++V
Sbjct: 1   MCGGAIISDYVEPNPVVVDNLLWPDLDTTFSDLLGLDLITQ----TQNYPFNNTTSPNVV 60

Query: 61  VET-PKQLPQVKSEKVEGSEAAGSAMKKTKKVRKSKYRGIRQRPWGKWAAEIRDPQKGLR 120
               PKQL QVK EKVEG+E     MKK +KVRKSKYRGIRQRPWGKWAAEIRDP+KGLR
Sbjct: 61  DNNIPKQLSQVKKEKVEGNEVGRGEMKKPQKVRKSKYRGIRQRPWGKWAAEIRDPRKGLR 120

Query: 121 VWLGTYNTAEEAARAYDQAAIRIRGKKAKLNFTQPPPLPL-----------PSPPPQQLP 180
           VWLGTYNT EEAARAYDQAAIRIRGKKAKLNF  PPPLP            PSPP QQLP
Sbjct: 121 VWLGTYNTPEEAARAYDQAAIRIRGKKAKLNF--PPPLPSPPLLSVPLSLPPSPPQQQLP 180

Query: 181 TTSTPIDIQLKHQISSLESFLGLDPSLPVEPMADPWWVDDLLIYQQQNLQL 211
           TTSTPID++LKHQIS+LESFLGLDPS PVEP AD WWVDDLL  QQQNLQL
Sbjct: 181 TTSTPIDVELKHQISTLESFLGLDPSPPVEPTADLWWVDDLLACQQQNLQL 225

BLAST of ClCG05G006290.1 vs. TrEMBL
Match: A0A0B0MUY4_GOSAR (Ethylene-responsive transcription factor RAP2-3-like protein OS=Gossypium arboreum GN=F383_31781 PE=4 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 4.6e-44
Identity = 122/259 (47.10%), Postives = 145/259 (55.98%), Query Frame = 1

Query: 1   MCGGAIISDYVD---------NLLWPHLDTTFSDLLGLDLDLDLDLSTQNYPFNNTPSIV 60
           MCGGAIISD++            LW  LDT FSDLLGLD     D S     F+NT +  
Sbjct: 1   MCGGAIISDFIAVKRGRKLTAEDLWSELDT-FSDLLGLDYGNGKDSSFTQ--FDNTKA-- 60

Query: 61  VETPKQLPQVKSEKVEGSEAAGSAMKKTKKVRKSKYRGIRQRPWGKWAAEIRDPQKGLRV 120
               K L +V +E  + +        KT++ RK+ YRGIRQRPWGKWAAEIRDP KG+RV
Sbjct: 61  GSKAKNLEKVANETTQKTSRGREKEGKTQRTRKNIYRGIRQRPWGKWAAEIRDPHKGVRV 120

Query: 121 WLGTYNTAEEAARAYDQAAIRIRGKKAKLNFTQPPPLPLP-------------------- 180
           WLGTYNTAEEAARAYD+AA RIRG+KAKLNF Q P L  P                    
Sbjct: 121 WLGTYNTAEEAARAYDEAAKRIRGEKAKLNFPQTPHLTQPPAKKRCMMAPELTPPSSETK 180

Query: 181 SPPPQQL------------PTTSTPIDIQLKHQISSLESFLGLDP-------SLPVEP-M 211
           SPP  QL            P+ +   +++LK QISSLESFLGL+P       S   EP  
Sbjct: 181 SPPTPQLFMGFGYENGVYRPSEAMESEMELKEQISSLESFLGLEPDETTTELSGSAEPDS 240

BLAST of ClCG05G006290.1 vs. TrEMBL
Match: A0A0D2UVB3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G193600 PE=4 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 3.0e-43
Identity = 119/259 (45.95%), Postives = 145/259 (55.98%), Query Frame = 1

Query: 1   MCGGAIISDYVD---------NLLWPHLDTTFSDLLGLDLDLDLDLSTQNYPFNNTPSIV 60
           MCGGAIISD++            LW  LDT FSDLLGLD     D  +Q   F+NT +  
Sbjct: 1   MCGGAIISDFIAVKRGRKLTAEDLWSELDT-FSDLLGLDYGNGKDPFSQ---FDNTKA-- 60

Query: 61  VETPKQLPQVKSEKVEGSEAAGSAMKKTKKVRKSKYRGIRQRPWGKWAAEIRDPQKGLRV 120
               K L +V +E  + +        KT++ RK+ YRGIRQRPWGKWAAEIRDP KG+RV
Sbjct: 61  GSKAKNLEKVTNESTQKTSRGREKEGKTQRTRKNIYRGIRQRPWGKWAAEIRDPHKGVRV 120

Query: 121 WLGTYNTAEEAARAYDQAAIRIRGKKAKLNFTQPPPLPLP-------------------- 180
           WLGTYNTAEEAARAYD+AA RIRG KAKLNF Q P L  P                    
Sbjct: 121 WLGTYNTAEEAARAYDEAAKRIRGDKAKLNFPQTPRLTQPPAKKRCMMAPELTPPSSETK 180

Query: 181 -SPPPQQL-----------PTTSTPIDIQLKHQISSLESFLGLDP---SLPVEPMADP-- 211
            SP PQ             P+ +   +++LK QISSLESFLGL+P   +  +   A+P  
Sbjct: 181 SSPTPQPFMGFGYENGVYRPSEAMESEMELKEQISSLESFLGLEPDEMTTELSGSAEPES 240

BLAST of ClCG05G006290.1 vs. TrEMBL
Match: Q56E95_GOSHI (Putative ethylene responsive element binding protein 2 OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 5.1e-43
Identity = 122/260 (46.92%), Postives = 147/260 (56.54%), Query Frame = 1

Query: 1   MCGGAIISDYVD---------NLLWPHLDTTFSDLLGLDLDLDLDLS-TQNYPFNNTPSI 60
           MCGGAIISD++            LW  LDT FSDLLGLD     + S TQ+   +NT + 
Sbjct: 1   MCGGAIISDFIAVKRGRKLTAEDLWSELDT-FSDLLGLDYGNGKESSFTQS---DNTKA- 60

Query: 61  VVETPKQLPQVKSEKVEGSEAAGSAMKKTKKVRKSKYRGIRQRPWGKWAAEIRDPQKGLR 120
                K L +V +E  + +        KT++ RK+ YRGIRQRPWGKWAAEIRDP KG+R
Sbjct: 61  -GSKAKNLEKVANETTQKTSRGREKEGKTQRTRKNIYRGIRQRPWGKWAAEIRDPHKGVR 120

Query: 121 VWLGTYNTAEEAARAYDQAAIRIRGKKAKLNFTQPPPLPLP------------------- 180
           VWLGTYNTAEEAARAYD+AA RIRG+KAKLNF Q P L  P                   
Sbjct: 121 VWLGTYNTAEEAARAYDEAAKRIRGEKAKLNFPQTPHLTQPPAKKRCMMAPELTPPSSET 180

Query: 181 -SPPPQQL------------PTTSTPIDIQLKHQISSLESFLGLDP-------SLPVEP- 211
            SPP  QL            P+ +   +++LK QISSLESFLGL+P       S   EP 
Sbjct: 181 KSPPTPQLFMGFGYENGVYRPSEAMESEMELKEQISSLESFLGLEPDETTTELSGSAEPD 240

BLAST of ClCG05G006290.1 vs. TrEMBL
Match: Q5U8L6_GOSHI (AP2/EREBP transcription factor ERF-2 OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 4.3e-42
Identity = 117/259 (45.17%), Postives = 144/259 (55.60%), Query Frame = 1

Query: 1   MCGGAIISDYVD---------NLLWPHLDTTFSDLLGLDLDLDLDLSTQNYPFNNTPSIV 60
           MCGGAIISD++            LW  LDT FSDLLGLD     D  TQ   F+NT +  
Sbjct: 1   MCGGAIISDFIAVKRGRKLTAEDLWSELDT-FSDLLGLDYGNGKDPFTQ---FDNTKA-- 60

Query: 61  VETPKQLPQVKSEKVEGSEAAGSAMKKTKKVRKSKYRGIRQRPWGKWAAEIRDPQKGLRV 120
               K L +V +E  + +        KT++ RK+ YRGIR+RPWGKWAAEIRDP KG+R+
Sbjct: 61  GSKAKNLEKVTNESTQKTSRGREKEGKTQRTRKNIYRGIRRRPWGKWAAEIRDPHKGVRI 120

Query: 121 WLGTYNTAEEAARAYDQAAIRIRGKKAKLNFTQPPPLPLP-------------------- 180
           WLGTYNTAEEAARAYD+AA RIRG KAKLNF Q P L  P                    
Sbjct: 121 WLGTYNTAEEAARAYDEAAKRIRGDKAKLNFPQTPRLTQPPAKKRCMMAPELTPPSSETK 180

Query: 181 SPPPQQ------------LPTTSTPIDIQLKHQISSLESFLGLDP---SLPVEPMADP-- 211
           SPP  Q             P+ +   +++LK QISSLESFLGL+P   +  +   A+P  
Sbjct: 181 SPPTPQPFMGFGYENGVYRPSEAMESEMELKEQISSLESFLGLEPDEMTTELSGSAEPES 240

BLAST of ClCG05G006290.1 vs. TAIR10
Match: AT3G16770.1 (AT3G16770.1 ethylene-responsive element binding protein)

HSP 1 Score: 136.7 bits (343), Expect = 1.6e-32
Identity = 101/254 (39.76%), Postives = 124/254 (48.82%), Query Frame = 1

Query: 1   MCGGAIISDYVDNLLWPHLDTTFSDLLGLDLDLDLDLSTQN--YPFNNTPSIVVETPKQL 60
           MCGGAIISDY   +           L   +L  +LD S  +  + F +T  +    P   
Sbjct: 1   MCGGAIISDYAPLVT----KAKGRKLTAEELWSELDASAADDFWGFYSTSKL---HPTNQ 60

Query: 61  PQVKSEKVEGSEAAGSAMKKTKKVRKSKYRGIRQRPWGKWAAEIRDPQKGLRVWLGTYNT 120
             VK E V+  +A     ++    RK+ YRGIR+RPWGKWAAEIRDP+KG+RVWLGT+NT
Sbjct: 61  VNVKEEAVKKEQATEPGKRRK---RKNVYRGIRKRPWGKWAAEIRDPRKGVRVWLGTFNT 120

Query: 121 AEEAARAYDQAAIRIRGKKAKLNFTQ---PPP---LPLPSPP-----------------P 180
           AEEAA AYD AA +IRG KAKLNF     PPP    P PS P                  
Sbjct: 121 AEEAAMAYDVAAKQIRGDKAKLNFPDLHHPPPPNYTPPPSSPRSTDQPPAKKVCVVSQSE 180

Query: 181 QQLPTTSTPI--------------------DIQLKHQISSLESFLGLDPSLPVEPM---- 202
            +L   S P+                    D  LK QISSLESFL LD +   +P     
Sbjct: 181 SELSQPSFPVECIGFGNGDEFQNLSYGFEPDYDLKQQISSLESFLELDGNTAEQPSQLDE 240

BLAST of ClCG05G006290.1 vs. TAIR10
Match: AT1G53910.1 (AT1G53910.1 related to AP2 12)

HSP 1 Score: 131.0 bits (328), Expect = 8.8e-31
Identity = 86/238 (36.13%), Postives = 113/238 (47.48%), Query Frame = 1

Query: 1   MCGGAIISDYV---------DNLLWPHLDTT---------------------------FS 60
           MCGGAIISD++            +WP L                              F 
Sbjct: 1   MCGGAIISDFIPPPRSRRVTSEFIWPDLKKNLKGSKKSSKNRSNFFDFDAEFEADFQGFK 60

Query: 61  DLLGLDLDLDLDLS-----TQNYPFNNTPSIVVETPKQLPQVKSEKVEGSEAAGSAMKKT 120
           D   +D D D D+       + + F +TP   V    +   V  +KV G +  G A K  
Sbjct: 61  DDSSIDCDDDFDVGDVFADVKPFVFTSTPKPAVSAAAE-GSVFGKKVTGLD--GDAEKSA 120

Query: 121 KKVRKSKYRGIRQRPWGKWAAEIRDPQKGLRVWLGTYNTAEEAARAYDQAAIRIRGKKAK 176
            + RK++YRGIRQRPWGKWAAEIRDP++G R+WLGT+ TAEEAARAYD AA RIRG KAK
Sbjct: 121 NRKRKNQYRGIRQRPWGKWAAEIRDPREGARIWLGTFKTAEEAARAYDAAARRIRGSKAK 180

BLAST of ClCG05G006290.1 vs. TAIR10
Match: AT3G14230.1 (AT3G14230.1 related to AP2 2)

HSP 1 Score: 126.3 bits (316), Expect = 2.2e-29
Identity = 82/204 (40.20%), Postives = 101/204 (49.51%), Query Frame = 1

Query: 1   MCGGAIISDYV---------DNLLWPHLDTTF----------SDLLGLDLDLDLDLS--- 60
           MCGGAIISD++         +  +WP L              SD   LD D + D     
Sbjct: 1   MCGGAIISDFIPPPRSLRVTNEFIWPDLKNKVKASKKRSNKRSDFFDLDDDFEADFQGFK 60

Query: 61  ---------TQNYPFNNTPSIVVETPKQLPQV----------KSEKVEGSEAAGSAMKKT 120
                      +   N  P +   T K +              +   +  E+A  A K +
Sbjct: 61  DDSAFDCEDDDDVFVNVKPFVFTATTKPVASAFVSTGIYLVGSAYAKKTVESAEQAEKSS 120

Query: 121 KKVRKSKYRGIRQRPWGKWAAEIRDPQKGLRVWLGTYNTAEEAARAYDQAAIRIRGKKAK 164
           K+ RK++YRGIRQRPWGKWAAEIRDP+KG R WLGT++TAEEAARAYD AA RIRG KAK
Sbjct: 121 KRKRKNQYRGIRQRPWGKWAAEIRDPRKGSREWLGTFDTAEEAARAYDAAARRIRGTKAK 180

BLAST of ClCG05G006290.1 vs. TAIR10
Match: AT2G47520.1 (AT2G47520.1 Integrase-type DNA-binding superfamily protein)

HSP 1 Score: 117.9 bits (294), Expect = 7.8e-27
Identity = 72/155 (46.45%), Postives = 87/155 (56.13%), Query Frame = 1

Query: 55  PKQLPQVKSEKVEGSEAAGSAMKKTKKVRKSKYRGIRQRPWGKWAAEIRDPQKGLRVWLG 114
           P QL  V S K +    + S  +  K+ RK+ YRGIRQRPWGKWAAEIRDP KG+RVWLG
Sbjct: 19  PSQLGSVSSRK-KRKPVSVSEERDGKRERKNLYRGIRQRPWGKWAAEIRDPSKGVRVWLG 78

Query: 115 TYNTAEEAARAYDQAAIRIRGKKAKLNF--TQPPPLPLPSPPPQQLPTTSTPIDIQLKHQ 174
           T+ TA+EAARAYD AAI+IRG+KAKLNF  TQ        P   Q    S      L   
Sbjct: 79  TFKTADEAARAYDVAAIKIRGRKAKLNFPNTQVEEEADTKPGGNQNELISENQVESLSED 138

Query: 175 ISSLESFLGLDPSLPVEPMADPWWVDDLLIYQQQN 208
           + +LE ++     +PV        + +L  YQ  N
Sbjct: 139 LMALEDYMRF-YQIPVADDQSATDIGNLWSYQDSN 171

BLAST of ClCG05G006290.1 vs. TAIR10
Match: AT5G50080.1 (AT5G50080.1 ethylene response factor 110)

HSP 1 Score: 115.9 bits (289), Expect = 2.9e-26
Identity = 55/101 (54.46%), Postives = 67/101 (66.34%), Query Frame = 1

Query: 55  PKQLPQVKSEKVEGSEAAGSAMKKTKKVRKSKYRGIRQRPWGKWAAEIRDPQKGLRVWLG 114
           P    +V S      E+   A  +  + +K +YRG+RQRPWGKWAAEIRDP +  RVWLG
Sbjct: 45  PSSFARVDSSHNPIEESMSKAFPEEAREKKRRYRGVRQRPWGKWAAEIRDPHRAARVWLG 104

Query: 115 TYNTAEEAARAYDQAAIRIRGKKAKLNFTQPPPLPLPSPPP 156
           T++TAE AARAYD+AA+R RG KAKLNF +   + LP PPP
Sbjct: 105 TFDTAEAAARAYDEAALRFRGNKAKLNFPEDVRI-LPPPPP 144

BLAST of ClCG05G006290.1 vs. NCBI nr
Match: gi|449432884|ref|XP_004134228.1| (PREDICTED: ethylene-responsive transcription factor RAP2-3-like [Cucumis sativus])

HSP 1 Score: 322.4 bits (825), Expect = 5.9e-85
Identity = 173/231 (74.89%), Postives = 181/231 (78.35%), Query Frame = 1

Query: 1   MCGGAIISDYV-------DNLLWPHLDTTFSDLLGLDLDLDLDLSTQNYPFNNT--PSIV 60
           MCGGAIISDYV       DNLLWP LDTTFSDLLGLDL       TQNYPFNNT  P++V
Sbjct: 1   MCGGAIISDYVEPNPVVVDNLLWPDLDTTFSDLLGLDLITQ----TQNYPFNNTTSPNVV 60

Query: 61  VET-PKQLPQVKSEKVEGSEAAGSAMKKTKKVRKSKYRGIRQRPWGKWAAEIRDPQKGLR 120
               PKQL QVK EKVEG+E     MKK +KVRKSKYRGIRQRPWGKWAAEIRDP+KGLR
Sbjct: 61  DNNIPKQLSQVKKEKVEGNEVGRGEMKKPQKVRKSKYRGIRQRPWGKWAAEIRDPRKGLR 120

Query: 121 VWLGTYNTAEEAARAYDQAAIRIRGKKAKLNFTQPPPLPL-----------PSPPPQQLP 180
           VWLGTYNT EEAARAYDQAAIRIRGKKAKLNF  PPPLP            PSPP QQLP
Sbjct: 121 VWLGTYNTPEEAARAYDQAAIRIRGKKAKLNF--PPPLPSPPLLSVPLSLPPSPPQQQLP 180

Query: 181 TTSTPIDIQLKHQISSLESFLGLDPSLPVEPMADPWWVDDLLIYQQQNLQL 211
           TTSTPID++LKHQIS+LESFLGLDPS PVEP AD WWVDDLL  QQQNLQL
Sbjct: 181 TTSTPIDVELKHQISTLESFLGLDPSPPVEPTADLWWVDDLLACQQQNLQL 225

BLAST of ClCG05G006290.1 vs. NCBI nr
Match: gi|659076877|ref|XP_008438910.1| (PREDICTED: ethylene-responsive transcription factor RAP2-3 isoform X1 [Cucumis melo])

HSP 1 Score: 318.9 bits (816), Expect = 6.5e-84
Identity = 174/233 (74.68%), Postives = 182/233 (78.11%), Query Frame = 1

Query: 1   MCGGAIISDYV-------DNLLWPHLDTT-FSDLLGLDLDLDLDLSTQNYPFNNTP---S 60
           MCGGAIISDYV       DNLLWP LDTT FSDLLGLDL       TQNY FNNT    +
Sbjct: 1   MCGGAIISDYVEPNPVVVDNLLWPDLDTTLFSDLLGLDLS-----GTQNYLFNNTTPSAN 60

Query: 61  IVVETPKQLPQVKSEKVEGSEAAGSAMKKTKKVRKSKYRGIRQRPWGKWAAEIRDPQKGL 120
           +V   PKQL QVK E+VEG+E A S MKK +KVRKSKYRGIRQRPWGKWAAEIRDPQKGL
Sbjct: 61  VVHNIPKQLSQVKKERVEGNEGATSEMKKPQKVRKSKYRGIRQRPWGKWAAEIRDPQKGL 120

Query: 121 RVWLGTYNTAEEAARAYDQAAIRIRGKKAKLNFTQPP-----PLPLPSPP------PQQL 180
           RVWLGTYNTAEEAARAYDQAAIRIRGKKAKLNF  PP     PLPLP PP       QQL
Sbjct: 121 RVWLGTYNTAEEAARAYDQAAIRIRGKKAKLNFPHPPPPPSLPLPLPLPPSLPQQQQQQL 180

Query: 181 PTTS-TPIDIQLKHQISSLESFLGLDPSLPVEPMADPWWVDDLLIYQQQNLQL 211
           PTTS TP D++LKHQIS+LESFLGLDPS PVEP AD WWVDDLL YQQQNLQL
Sbjct: 181 PTTSATPFDVELKHQISTLESFLGLDPSPPVEPTADLWWVDDLLTYQQQNLQL 228

BLAST of ClCG05G006290.1 vs. NCBI nr
Match: gi|659076879|ref|XP_008438911.1| (PREDICTED: ethylene-responsive transcription factor RAP2-3 isoform X2 [Cucumis melo])

HSP 1 Score: 310.1 bits (793), Expect = 3.0e-81
Identity = 172/233 (73.82%), Postives = 180/233 (77.25%), Query Frame = 1

Query: 1   MCGGAIISDYV-------DNLLWPHLDTT-FSDLLGLDLDLDLDLSTQNYPFNNTP---S 60
           MCGGAIISDYV       DNLLWP LDTT FSDLLGLDL       TQNY FNNT    +
Sbjct: 1   MCGGAIISDYVEPNPVVVDNLLWPDLDTTLFSDLLGLDLS-----GTQNYLFNNTTPSAN 60

Query: 61  IVVETPKQLPQVKSEKVEGSEAAGSAMKKTKKVRKSKYRGIRQRPWGKWAAEIRDPQKGL 120
           +V   PKQL Q   E+VEG+E A S MKK +KVRKSKYRGIRQRPWGKWAAEIRDPQKGL
Sbjct: 61  VVHNIPKQLSQ---ERVEGNEGATSEMKKPQKVRKSKYRGIRQRPWGKWAAEIRDPQKGL 120

Query: 121 RVWLGTYNTAEEAARAYDQAAIRIRGKKAKLNFTQPP-----PLPLPSPP------PQQL 180
           RVWLGTYNTAEEAARAYDQAAIRIRGKKAKLNF  PP     PLPLP PP       QQL
Sbjct: 121 RVWLGTYNTAEEAARAYDQAAIRIRGKKAKLNFPHPPPPPSLPLPLPLPPSLPQQQQQQL 180

Query: 181 PTTS-TPIDIQLKHQISSLESFLGLDPSLPVEPMADPWWVDDLLIYQQQNLQL 211
           PTTS TP D++LKHQIS+LESFLGLDPS PVEP AD WWVDDLL YQQQNLQL
Sbjct: 181 PTTSATPFDVELKHQISTLESFLGLDPSPPVEPTADLWWVDDLLTYQQQNLQL 225

BLAST of ClCG05G006290.1 vs. NCBI nr
Match: gi|728824721|gb|KHG05913.1| (Ethylene-responsive transcription factor RAP2-3 -like protein [Gossypium arboreum])

HSP 1 Score: 186.0 bits (471), Expect = 6.6e-44
Identity = 122/259 (47.10%), Postives = 145/259 (55.98%), Query Frame = 1

Query: 1   MCGGAIISDYVD---------NLLWPHLDTTFSDLLGLDLDLDLDLSTQNYPFNNTPSIV 60
           MCGGAIISD++            LW  LDT FSDLLGLD     D S     F+NT +  
Sbjct: 1   MCGGAIISDFIAVKRGRKLTAEDLWSELDT-FSDLLGLDYGNGKDSSFTQ--FDNTKA-- 60

Query: 61  VETPKQLPQVKSEKVEGSEAAGSAMKKTKKVRKSKYRGIRQRPWGKWAAEIRDPQKGLRV 120
               K L +V +E  + +        KT++ RK+ YRGIRQRPWGKWAAEIRDP KG+RV
Sbjct: 61  GSKAKNLEKVANETTQKTSRGREKEGKTQRTRKNIYRGIRQRPWGKWAAEIRDPHKGVRV 120

Query: 121 WLGTYNTAEEAARAYDQAAIRIRGKKAKLNFTQPPPLPLP-------------------- 180
           WLGTYNTAEEAARAYD+AA RIRG+KAKLNF Q P L  P                    
Sbjct: 121 WLGTYNTAEEAARAYDEAAKRIRGEKAKLNFPQTPHLTQPPAKKRCMMAPELTPPSSETK 180

Query: 181 SPPPQQL------------PTTSTPIDIQLKHQISSLESFLGLDP-------SLPVEP-M 211
           SPP  QL            P+ +   +++LK QISSLESFLGL+P       S   EP  
Sbjct: 181 SPPTPQLFMGFGYENGVYRPSEAMESEMELKEQISSLESFLGLEPDETTTELSGSAEPDS 240

BLAST of ClCG05G006290.1 vs. NCBI nr
Match: gi|823246609|ref|XP_012455978.1| (PREDICTED: ethylene-responsive transcription factor RAP2-3 [Gossypium raimondii])

HSP 1 Score: 183.3 bits (464), Expect = 4.3e-43
Identity = 119/259 (45.95%), Postives = 145/259 (55.98%), Query Frame = 1

Query: 1   MCGGAIISDYVD---------NLLWPHLDTTFSDLLGLDLDLDLDLSTQNYPFNNTPSIV 60
           MCGGAIISD++            LW  LDT FSDLLGLD     D  +Q   F+NT +  
Sbjct: 1   MCGGAIISDFIAVKRGRKLTAEDLWSELDT-FSDLLGLDYGNGKDPFSQ---FDNTKA-- 60

Query: 61  VETPKQLPQVKSEKVEGSEAAGSAMKKTKKVRKSKYRGIRQRPWGKWAAEIRDPQKGLRV 120
               K L +V +E  + +        KT++ RK+ YRGIRQRPWGKWAAEIRDP KG+RV
Sbjct: 61  GSKAKNLEKVTNESTQKTSRGREKEGKTQRTRKNIYRGIRQRPWGKWAAEIRDPHKGVRV 120

Query: 121 WLGTYNTAEEAARAYDQAAIRIRGKKAKLNFTQPPPLPLP-------------------- 180
           WLGTYNTAEEAARAYD+AA RIRG KAKLNF Q P L  P                    
Sbjct: 121 WLGTYNTAEEAARAYDEAAKRIRGDKAKLNFPQTPRLTQPPAKKRCMMAPELTPPSSETK 180

Query: 181 -SPPPQQL-----------PTTSTPIDIQLKHQISSLESFLGLDP---SLPVEPMADP-- 211
            SP PQ             P+ +   +++LK QISSLESFLGL+P   +  +   A+P  
Sbjct: 181 SSPTPQPFMGFGYENGVYRPSEAMESEMELKEQISSLESFLGLEPDEMTTELSGSAEPES 240

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
RAP23_ARATH2.9e-3139.76Ethylene-responsive transcription factor RAP2-3 OS=Arabidopsis thaliana GN=RAP2-... [more]
RA212_ARATH1.6e-2936.13Ethylene-responsive transcription factor RAP2-12 OS=Arabidopsis thaliana GN=RAP2... [more]
RAP22_ARATH3.9e-2840.20Ethylene-responsive transcription factor RAP2-2 OS=Arabidopsis thaliana GN=RAP2-... [more]
ERF1_ORYSJ4.7e-2672.97Ethylene-responsive transcription factor 1 OS=Oryza sativa subsp. japonica GN=ER... [more]
ERF71_ARATH1.4e-2546.45Ethylene-responsive transcription factor ERF071 OS=Arabidopsis thaliana GN=ERF07... [more]
Match NameE-valueIdentityDescription
A0A0A0L7Z6_CUCSA4.1e-8574.89Uncharacterized protein OS=Cucumis sativus GN=Csa_3G164580 PE=4 SV=1[more]
A0A0B0MUY4_GOSAR4.6e-4447.10Ethylene-responsive transcription factor RAP2-3-like protein OS=Gossypium arbore... [more]
A0A0D2UVB3_GOSRA3.0e-4345.95Uncharacterized protein OS=Gossypium raimondii GN=B456_011G193600 PE=4 SV=1[more]
Q56E95_GOSHI5.1e-4346.92Putative ethylene responsive element binding protein 2 OS=Gossypium hirsutum PE=... [more]
Q5U8L6_GOSHI4.3e-4245.17AP2/EREBP transcription factor ERF-2 OS=Gossypium hirsutum PE=2 SV=1[more]
Match NameE-valueIdentityDescription
AT3G16770.11.6e-3239.76 ethylene-responsive element binding protein[more]
AT1G53910.18.8e-3136.13 related to AP2 12[more]
AT3G14230.12.2e-2940.20 related to AP2 2[more]
AT2G47520.17.8e-2746.45 Integrase-type DNA-binding superfamily protein[more]
AT5G50080.12.9e-2654.46 ethylene response factor 110[more]
Match NameE-valueIdentityDescription
gi|449432884|ref|XP_004134228.1|5.9e-8574.89PREDICTED: ethylene-responsive transcription factor RAP2-3-like [Cucumis sativus... [more]
gi|659076877|ref|XP_008438910.1|6.5e-8474.68PREDICTED: ethylene-responsive transcription factor RAP2-3 isoform X1 [Cucumis m... [more]
gi|659076879|ref|XP_008438911.1|3.0e-8173.82PREDICTED: ethylene-responsive transcription factor RAP2-3 isoform X2 [Cucumis m... [more]
gi|728824721|gb|KHG05913.1|6.6e-4447.10Ethylene-responsive transcription factor RAP2-3 -like protein [Gossypium arboreu... [more]
gi|823246609|ref|XP_012455978.1|4.3e-4345.95PREDICTED: ethylene-responsive transcription factor RAP2-3 [Gossypium raimondii][more]
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR001471AP2/ERF_dom
IPR016177DNA-bd_dom_sf
Vocabulary: Molecular Function
TermDefinition
GO:0003700transcription factor activity, sequence-specific DNA binding
GO:0003677DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005667 transcription factor complex
molecular_function GO:0003677 DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
ClCG05G006290ClCG05G006290gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
ClCG05G006290.1ClCG05G006290.1-proteinpolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
ClCG05G006290.1.five_prime_UTR1ClCG05G006290.1.five_prime_UTR1five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
ClCG05G006290.1.cds1ClCG05G006290.1.cds1CDS
ClCG05G006290.1.cds2ClCG05G006290.1.cds2CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
ClCG05G006290.1.three_prime_UTR1ClCG05G006290.1.three_prime_UTR1three_prime_UTR


Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001471AP2/ERF domainPRINTSPR00367ETHRSPELEMNTcoord: 87..98
score: 1.4E-11coord: 109..125
score: 1.4
IPR001471AP2/ERF domainGENE3DG3DSA:3.30.730.10coord: 86..143
score: 9.6
IPR001471AP2/ERF domainPFAMPF00847AP2coord: 85..135
score: 2.1
IPR001471AP2/ERF domainSMARTSM00380rav1_2coord: 86..149
score: 4.1
IPR001471AP2/ERF domainPROFILEPS51032AP2_ERFcoord: 86..143
score: 24
IPR016177DNA-binding domainunknownSSF54171DNA-binding domaincoord: 85..143
score: 5.75
NoneNo IPR availablePANTHERPTHR31190FAMILY NOT NAMEDcoord: 45..199
score: 5.2
NoneNo IPR availablePANTHERPTHR31190:SF18SUBFAMILY NOT NAMEDcoord: 45..199
score: 5.2