ClCG05G006100.1 (mRNA) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG05G006100.1
Type	mRNA
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Transcription elongation factor B polypeptide 3
Location	CG_Chr05 : 6055938 .. 6056648 (+)
Sequence length	711

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGTGAAGAAGTAAATAAAACAACTTCATCATTTCTTAATAATCTTTCCATTAATGAAGCTATTGATAGTTTGAAGTTTCTTGGAGATGTTGGCGATACTGATTTAAATCTTCTAGATCATATTTTGCCACACTGTACTATTGACCAATTGATGCATATAGAAAACTCTTCCAAAGGAAGGGATCTCACACCCGTGACTGACAAGTTGTGGAAAAATTTCTATGAAAAAAAGTTCGGTAAGAACAATTCTGATTTTGTGATTGAGGGGATGAAACATAAGAAAAAATCATTTAAATGGAAGCAAGTGTATGAGACAAAGATGGAAGAGTTAGAAAAGAAGGTAAAGAAAATTGAGGCTCAATATATACAAAACCGTCAAAAGGAAAAAGCTAAAAAAGAAAGTCGTCAAATAATATTTTGTGAGGGTTCCTCTCCAATCAATAAGAAACTTGGATTTGAAGGAAAACCAAATGAGTTTGGATGCAATACCAACGAGAGCAAGATTTTGAATAAGTCAAAGAGAGAAGAACAAATTTGTAAAGTTCCATCTATGATCAATAATAAGAAGAAACAAAGCTTTGGAGGAACAACCAAACCTAGGCACAATACTAAGCCAAGCAAGATATGGAAGAAAGCAAAAAGAGAAGCGTTGCAGTGTATAGAGACGAAGAACCTAATGGCTTTTCGAAGAAATGTGATGCAAAAGTAG

mRNA sequence

ATGTGTGAAGAAGTAAATAAAACAACTTCATCATTTCTTAATAATCTTTCCATTAATGAAGCTATTGATAGTTTGAAGTTTCTTGGAGATGTTGGCGATACTGATTTAAATCTTCTAGATCATATTTTGCCACACTGTACTATTGACCAATTGATGCATATAGAAAACTCTTCCAAAGGAAGGGATCTCACACCCGTGACTGACAAGTTGTGGAAAAATTTCTATGAAAAAAAGTTCGGTAAGAACAATTCTGATTTTGTGATTGAGGGGATGAAACATAAGAAAAAATCATTTAAATGGAAGCAAGTGTATGAGACAAAGATGGAAGAGTTAGAAAAGAAGGTAAAGAAAATTGAGGCTCAATATATACAAAACCGTCAAAAGGAAAAAGCTAAAAAAGAAAGTCGTCAAATAATATTTTGTGAGGGTTCCTCTCCAATCAATAAGAAACTTGGATTTGAAGGAAAACCAAATGAGTTTGGATGCAATACCAACGAGAGCAAGATTTTGAATAAGTCAAAGAGAGAAGAACAAATTTGTAAAGTTCCATCTATGATCAATAATAAGAAGAAACAAAGCTTTGGAGGAACAACCAAACCTAGGCACAATACTAAGCCAAGCAAGATATGGAAGAAAGCAAAAAGAGAAGCGTTGCAGTGTATAGAGACGAAGAACCTAATGGCTTTTCGAAGAAATGTGATGCAAAAGTAG

Coding sequence (CDS)

ATGTGTGAAGAAGTAAATAAAACAACTTCATCATTTCTTAATAATCTTTCCATTAATGAAGCTATTGATAGTTTGAAGTTTCTTGGAGATGTTGGCGATACTGATTTAAATCTTCTAGATCATATTTTGCCACACTGTACTATTGACCAATTGATGCATATAGAAAACTCTTCCAAAGGAAGGGATCTCACACCCGTGACTGACAAGTTGTGGAAAAATTTCTATGAAAAAAAGTTCGGTAAGAACAATTCTGATTTTGTGATTGAGGGGATGAAACATAAGAAAAAATCATTTAAATGGAAGCAAGTGTATGAGACAAAGATGGAAGAGTTAGAAAAGAAGGTAAAGAAAATTGAGGCTCAATATATACAAAACCGTCAAAAGGAAAAAGCTAAAAAAGAAAGTCGTCAAATAATATTTTGTGAGGGTTCCTCTCCAATCAATAAGAAACTTGGATTTGAAGGAAAACCAAATGAGTTTGGATGCAATACCAACGAGAGCAAGATTTTGAATAAGTCAAAGAGAGAAGAACAAATTTGTAAAGTTCCATCTATGATCAATAATAAGAAGAAACAAAGCTTTGGAGGAACAACCAAACCTAGGCACAATACTAAGCCAAGCAAGATATGGAAGAAAGCAAAAAGAGAAGCGTTGCAGTGTATAGAGACGAAGAACCTAATGGCTTTTCGAAGAAATGTGATGCAAAAGTAG

Protein sequence

MCEEVNKTTSSFLNNLSINEAIDSLKFLGDVGDTDLNLLDHILPHCTIDQLMHIENSSKGRDLTPVTDKLWKNFYEKKFGKNNSDFVIEGMKHKKKSFKWKQVYETKMEELEKKVKKIEAQYIQNRQKEKAKKESRQIIFCEGSSPINKKLGFEGKPNEFGCNTNESKILNKSKREEQICKVPSMINNKKKQSFGGTTKPRHNTKPSKIWKKAKREALQCIETKNLMAFRRNVMQK

Homology

[Close]

BLAST of ClCG05G006100.1 vs. TrEMBL
Match: A0A0A0KJR8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G511010 PE=4 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 5.1e-44
Identity = 95/176 (53.98%), Postives = 124/176 (70.45%), Query Frame = 1


Query: 15  NLSINEAIDSLKFLGDVGDTDLNLLDHILPHCTIDQLMHIENSSKGRDLTPVTDKLWKNF 74
           N  +N+AIDS+KFLGDVGDTDL  L+ IL HCT DQL+HIEN SKGRDLTP+T+KLWKNF
Sbjct: 12  NSDVNKAIDSVKFLGDVGDTDLRSLESILSHCTADQLLHIENCSKGRDLTPITNKLWKNF 71

Query: 75  YEKKFGKNNSDFVIEGMKHKKKSFKWKQVYETKMEELEKKVKKIEAQYIQNRQKEKAKKE 134
           YE+KFGK++ D V+     K ++FKW  +Y  KM+ELE + KKIE + IQ+ QKEKA+K+
Sbjct: 72  YERKFGKDDVDIVV-----KNETFKWMDLYVAKMKELENRAKKIEDRIIQSYQKEKARKQ 131

Query: 135 SRQIIFC-EGSSPINKKLGFEGKPNEFGCNTNESKILNKSKREEQICKVPSMINNK 190
           SRQI+FC    S ++ K     +   F  NT +S  L K+KRE  + KV +  N +
Sbjct: 132 SRQIVFCGSEDSLLSNKNPKSNRTVGFKSNTTKSVTLKKAKRELHVPKVSTSSNKE 182

[Close]

BLAST of ClCG05G006100.1 vs. TrEMBL
Match: A0A061DJY1_THECC (Nucleus, subunit A, putative isoform 2 OS=Theobroma cacao GN=TCM_001808 PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 1.2e-37
Identity = 82/190 (43.16%), Postives = 128/190 (67.37%), Query Frame = 1


Query: 13  LNNLSINEAIDSLKFLGDVGDTDLNLLDHILPHCTIDQLMHIENSSKGRDLTPVTDKLWK 72
           L +L I  AID++++LGDVG+TD +LL+ ILPHCT+DQL+H+E S+KGRDL+PVTDKLWK
Sbjct: 22  LVDLCIRTAIDNVRYLGDVGETDSHLLERILPHCTMDQLIHVEKSTKGRDLSPVTDKLWK 81

Query: 73  NFYEKKFGKNNSDFVIEGMKHKKKSFKWKQVYETKMEELEKKVKKIEAQYIQNRQKEKAK 132
           NFYE +FG+ +++ VIE MK KK SF+W+Q+YE K++++++   K   +  Q  +KE A+
Sbjct: 82  NFYELQFGRASTNLVIERMKLKKVSFRWRQLYEAKLKDVQEAENKAIDRLKQLYKKEDAR 141

Query: 133 KESRQIIFCEGSSPINKKLGFEGKPNEFGCNTNESKILNKSK----REEQICKVPSMINN 192
           K+SRQ+  C    P +K+  F G    +  +  +S I+ K+K    + +++  + +M   
Sbjct: 142 KQSRQVQLCTKVPPSSKRSFFAGSGPGYNLSYVKSNIMKKAKIDLMKSQEVKNLAAMKKK 201

Query: 193 KKKQSFGGTT 199
             +    GTT
Sbjct: 202 AVQTHHRGTT 211

[Close]

BLAST of ClCG05G006100.1 vs. TrEMBL
Match: A0A061DJY1_THECC (Nucleus, subunit A, putative isoform 2 OS=Theobroma cacao GN=TCM_001808 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 8.3e-26
Identity = 84/226 (37.17%), Postives = 122/226 (53.98%), Query Frame = 1


Query: 13  LNNLSINEAIDSLKFLGDVGDTDLNLLDHILPHCTIDQLMHIENSSKGRDLTPVTDKLWK 72
           L +L I  AID++++LGDVG+TD +LL+ ILPHCT+DQL+H+E S+KGRDL+PVTDKLWK
Sbjct: 22  LVDLCIRTAIDNVRYLGDVGETDSHLLERILPHCTMDQLIHVEKSTKGRDLSPVTDKLWK 81

Query: 73  NFYEKKFGKNNSDFVIEGMKHKKKSFKWKQVYETKMEELEKKVKKIEAQYIQNRQKEKAK 132
           NFYE +FG+ +++ VIE MK                    KKV     Q  + + K+  +
Sbjct: 82  NFYELQFGRASTNLVIERMK-------------------LKKVSFRWRQLYEAKLKDVQE 141

Query: 133 KESRQIIFCEGSSPINKKLGFEGKPNEFGCNTNESKILNKSKREEQIC-KVPSMINNKKK 192
            E++ I   +    + KK                 +   K  R+ Q+C KVP       K
Sbjct: 142 AENKAI---DRLKQLYKK-----------------EDARKQSRQVQLCTKVPP----SSK 201

Query: 193 QSFGGTTKPRHNTK--PSKIWKKAKREALQCIETKNLMAFRRNVMQ 236
           +SF   + P +N     S I KKAK + ++  E KNL A ++  +Q
Sbjct: 202 RSFFAGSGPGYNLSYVKSNIMKKAKIDLMKSQEVKNLAAMKKKAVQ 204

HSP 2 Score: 164.9 bits (416), Expect = 1.2e-37
Identity = 83/199 (41.71%), Postives = 129/199 (64.82%), Query Frame = 1


Query: 4   EVNKTTSSFLNNLSINEAIDSLKFLGDVGDTDLNLLDHILPHCTIDQLMHIENSSKGRDL 63
           E+ KT S  L +L +   ID++++LGDVG+TD +LL+ ILPHCT+DQL+H+E S+KGRDL
Sbjct: 15  EMRKTPS--LVDLCVRTVIDNVRYLGDVGETDSHLLERILPHCTVDQLLHVETSTKGRDL 74

Query: 64  TPVTDKLWKNFYEKKFGKNNSDFVIEGMKHKKKSFKWKQVYETKMEELEKKVKKIEAQYI 123
           + VTDKLWKNFYE +FG+ +   VIE MK KK SF+W+Q+YE K++++++   K   +  
Sbjct: 75  SSVTDKLWKNFYELQFGRESMQIVIERMKLKKVSFRWRQLYEAKLKDVQEAENKAIDRLK 134

Query: 124 QNRQKEKAKKESRQIIFCEGSSPINKKLGFEGKPNEFGCNTNESKILNKSK----REEQI 183
           Q  +KE A+K+SRQ+  C    P +K+  F G    +  +  +S I+ K+K    + +++
Sbjct: 135 QLYKKEDARKQSRQVQLCTKVPPSSKRSFFAGSGPGYNMSNVKSNIMKKAKIDLMKSQEV 194

Query: 184 CKVPSMINNKKKQSFGGTT 199
             + +M     +    GTT
Sbjct: 195 KNLAAMKKKAVQSHHSGTT 211

[Close]

BLAST of ClCG05G006100.1 vs. TrEMBL
Match: A0A0D2RUW6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G004800 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 3.1e-25
Identity = 85/235 (36.17%), Postives = 123/235 (52.34%), Query Frame = 1


Query: 4   EVNKTTSSFLNNLSINEAIDSLKFLGDVGDTDLNLLDHILPHCTIDQLMHIENSSKGRDL 63
           E+ KT S  L +L +   ID++++LGDVG+TD +LL+ ILPHCT+DQL+H+E S+KGRDL
Sbjct: 15  EMRKTPS--LVDLCVRTVIDNVRYLGDVGETDSHLLERILPHCTVDQLLHVETSTKGRDL 74

Query: 64  TPVTDKLWKNFYEKKFGKNNSDFVIEGMKHKKKSFKWKQVYETKMEELEKKVKKIEAQYI 123
           + VTDKLWKNFYE +FG+ +   VIE MK                    KKV     Q  
Sbjct: 75  SSVTDKLWKNFYELQFGRESMQIVIERMK-------------------LKKVSFRWRQLY 134

Query: 124 QNRQKEKAKKESRQIIFCEGSSPINKKLGFEGKPNEFGCNTNESKILNKSKREEQIC-KV 183
           + + K+  + E++ I   +    + KK                 +   K  R+ Q+C KV
Sbjct: 135 EAKLKDVQEAENKAI---DRLKQLYKK-----------------EDARKQSRQVQLCTKV 194

Query: 184 PSMINNKKKQSFGGTTKPRHNTK--PSKIWKKAKREALQCIETKNLMAFRRNVMQ 236
           P       K+SF   + P +N     S I KKAK + ++  E KNL A ++  +Q
Sbjct: 195 PP----SSKRSFFAGSGPGYNMSNVKSNIMKKAKIDLMKSQEVKNLAAMKKKAVQ 204

HSP 2 Score: 164.5 bits (415), Expect = 1.6e-37
Identity = 82/164 (50.00%), Postives = 115/164 (70.12%), Query Frame = 1


Query: 13  LNNLSINEAIDSLKFLGDVGDTDLNLLDHILPHCTIDQLMHIENSSKGRDLTPVTDKLWK 72
           L +L I  AID++++LGDVG+TD+NLLDHILPHCT+DQLMHIE  ++ RDL+ VTDKLWK
Sbjct: 72  LVDLCIRTAIDNVRYLGDVGETDINLLDHILPHCTVDQLMHIEKCTEERDLSEVTDKLWK 131

Query: 73  NFYEKKFGKNNSDFVIEGMKHKKKSFKWKQVYETKMEELEKKVKKIEAQYIQNRQKEKAK 132
            FYEK+FG  +++ V+E MK KK SFKW ++YE K+++ ++  KK   +  Q  QKE A+
Sbjct: 132 KFYEKEFGVKSTNLVVERMKLKKVSFKWSKLYEAKLKDRDEAQKKSFDRIKQLYQKEDAR 191

Query: 133 KESRQIIFCEGSSPINKKLGFEGKPNEFGCNTNESKILNKSKRE 177
           K+SRQ+  C    P + K  F G P   G +  +S ++ K+K E
Sbjct: 192 KQSRQVKICTKVPPSSNKRCFYGGP---GTSNLKSNLMKKAKVE 232

[Close]

BLAST of ClCG05G006100.1 vs. TrEMBL
Match: F6H555_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0028g01320 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 4.2e-30
Identity = 91/224 (40.62%), Postives = 126/224 (56.25%), Query Frame = 1


Query: 13  LNNLSINEAIDSLKFLGDVGDTDLNLLDHILPHCTIDQLMHIENSSKGRDLTPVTDKLWK 72
           L +L I  AID++++LGDVG+TD+NLLDHILPHCT+DQLMHIE  ++ RDL+ VTDKLWK
Sbjct: 72  LVDLCIRTAIDNVRYLGDVGETDINLLDHILPHCTVDQLMHIEKCTEERDLSEVTDKLWK 131

Query: 73  NFYEKKFGKNNSDFVIEGMKHKKKSFKWKQVYETKMEELEKKVKKIEAQYIQNRQKEKAK 132
            FYEK+FG  +++ V+E MK KK SFKW               K  EA+    + +++A+
Sbjct: 132 KFYEKEFGVKSTNLVVERMKLKKVSFKW--------------SKLYEAKL---KDRDEAQ 191

Query: 133 KESRQIIFCEGSSPINKKLGFEGKPNEFGCNTNESKILNKSKREEQIC-KVPSMINNKKK 192
           K+S   I         K+L              + +   K  R+ +IC KVP   N  K+
Sbjct: 192 KKSFDRI---------KQL-------------YQKEDARKQSRQVKICTKVPPSSN--KR 251

Query: 193 QSFGGTTKPRHNTKPSKIWKKAKREALQCIETKNLMAFRRNVMQ 236
             +GG   P  +   S + KKAK E L   E KNL A ++  +Q
Sbjct: 252 CFYGG---PGTSNLKSNLMKKAKVECLNSPEVKNLAAMKKQALQ 251

HSP 2 Score: 164.1 bits (414), Expect = 2.1e-37
Identity = 83/199 (41.71%), Postives = 129/199 (64.82%), Query Frame = 1


Query: 4   EVNKTTSSFLNNLSINEAIDSLKFLGDVGDTDLNLLDHILPHCTIDQLMHIENSSKGRDL 63
           E+ KT S  L +L +   ID++++LGDVG+TD +LL+ ILPHCT+DQL+H+E S+KGRDL
Sbjct: 15  EMRKTPS--LVDLCVRTVIDNVRYLGDVGETDSHLLERILPHCTVDQLLHVEKSTKGRDL 74

Query: 64  TPVTDKLWKNFYEKKFGKNNSDFVIEGMKHKKKSFKWKQVYETKMEELEKKVKKIEAQYI 123
           + VTDKLWKNFYE +FG+ +   VIE MK KK SF+W+Q+YE K++++++   K   +  
Sbjct: 75  SSVTDKLWKNFYELQFGRESMKIVIERMKLKKVSFRWRQLYEAKLKDVQEAENKAIDRLK 134

Query: 124 QNRQKEKAKKESRQIIFCEGSSPINKKLGFEGKPNEFGCNTNESKILNKSK----REEQI 183
           Q  +KE A+K+SRQ+  C    P +K+  F G    +  +  +S I+ K+K    + +++
Sbjct: 135 QLYKKEDARKQSRQVQLCTKVPPSSKRSFFAGSGPGYNMSNVKSNIMKKAKIDLMKSQEV 194

Query: 184 CKVPSMINNKKKQSFGGTT 199
             + +M     +    GTT
Sbjct: 195 KNLAAMKKKAVQSYHSGTT 211

[Close]

BLAST of ClCG05G006100.1 vs. TAIR10
Match: AT2G42780.1 (AT2G42780.1 FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 119.4 bits (298), Expect = 3.0e-27
Identity = 61/191 (31.94%), Postives = 114/191 (59.69%), Query Frame = 1


Query: 13  LNNLSINEAIDSLKFLGDVGDTDLNLLDHILPHCTIDQLMHIENSSKGRDLTPVTDKLWK 72
           L +L + +AID++K++G VG  D  LL+ IL HCT++QL HIE+++   DL+P+TDK WK
Sbjct: 13  LVDLCVRKAIDNVKYIGYVGGVDFQLLEQILQHCTLEQLKHIEDATDDTDLSPITDKFWK 72

Query: 73  NFYEKKFGKNNSDFVIEGMK-HKKKSFKWKQVYETKMEELEKKVKKIEAQYIQNRQKEKA 132
            FY+K +G+ +   +IE ++ +K   FKW+ +YE K+  +++K K++  +  +  + E  
Sbjct: 73  GFYKKHYGEEDMKDLIEDLEWNKVNDFKWRNLYELKVIAVQQKEKELGGRLKERYKDENE 132

Query: 133 KKESRQIIFCEGSSPINKKLGFEGKPNEFGCNTNESKILNKSK----REEQICKVPSMIN 192
           +K+SRQ   C   +P +K+  +    + +     +S I+ K+K    + +++  + ++  
Sbjct: 133 RKQSRQTKVC-SKAPPSKRPFWGNSASGYNLGHVKSNIMKKAKIDLLKSQEVKNLTAIKR 192

Query: 193 NKKKQSFGGTT 199
           N  ++SF  +T
Sbjct: 193 NTIQKSFSIST 202

HSP 2 Score: 96.7 bits (239), Expect = 2.1e-20
Identity = 79/234 (33.76%), Postives = 113/234 (48.29%), Query Frame = 1


Query: 13  LNNLSINEAIDSLKFLGDVGDTDLNLLDHILPHCTIDQLMHIENSSKGRDLTPVTDKLWK 72
           L +L + +AID++K++G VG  D  LL+ IL HCT++QL HIE+++   DL+P+TDK WK
Sbjct: 13  LVDLCVRKAIDNVKYIGYVGGVDFQLLEQILQHCTLEQLKHIEDATDDTDLSPITDKFWK 72

Query: 73  NFYEKKFGKNNSDFVIEGMKHKKKSFKWKQVYETKMEELE-KKVKKI------EAQYIQN 132
            FY+K +G+       E MK               +E+LE  KV         E + I  
Sbjct: 73  GFYKKHYGE-------EDMKDL-------------IEDLEWNKVNDFKWRNLYELKVIAV 132

Query: 133 RQKEKAKKESRQIIFCEGSSPINKKLGFEGKPNEFGCNTNESKILNKSKREEQIC-KVPS 192
           +QKEK                   +LG  G+  E   + NE     K  R+ ++C K P 
Sbjct: 133 QQKEK-------------------ELG--GRLKERYKDENE----RKQSRQTKVCSKAPP 192

Query: 193 MINNKKKQSFGGTTKPRHNTK--PSKIWKKAKREALQCIETKNLMAFRRNVMQK 237
                 K+ F G +   +N     S I KKAK + L+  E KNL A +RN +QK
Sbjct: 193 -----SKRPFWGNSASGYNLGHVKSNIMKKAKIDLLKSQEVKNLTAIKRNTIQK 196

[Close]

BLAST of ClCG05G006100.1 vs. NCBI nr
Match: gi|700193830|gb|KGN49034.1| (hypothetical protein Csa_6G511010 [Cucumis sativus])

HSP 1 Score: 186.0 bits (471), Expect = 7.4e-44
Identity = 95/176 (53.98%), Postives = 124/176 (70.45%), Query Frame = 1


Query: 15  NLSINEAIDSLKFLGDVGDTDLNLLDHILPHCTIDQLMHIENSSKGRDLTPVTDKLWKNF 74
           N  +N+AIDS+KFLGDVGDTDL  L+ IL HCT DQL+HIEN SKGRDLTP+T+KLWKNF
Sbjct: 12  NSDVNKAIDSVKFLGDVGDTDLRSLESILSHCTADQLLHIENCSKGRDLTPITNKLWKNF 71

Query: 75  YEKKFGKNNSDFVIEGMKHKKKSFKWKQVYETKMEELEKKVKKIEAQYIQNRQKEKAKKE 134
           YE+KFGK++ D V+     K ++FKW  +Y  KM+ELE + KKIE + IQ+ QKEKA+K+
Sbjct: 72  YERKFGKDDVDIVV-----KNETFKWMDLYVAKMKELENRAKKIEDRIIQSYQKEKARKQ 131

Query: 135 SRQIIFC-EGSSPINKKLGFEGKPNEFGCNTNESKILNKSKREEQICKVPSMINNK 190
           SRQI+FC    S ++ K     +   F  NT +S  L K+KRE  + KV +  N +
Sbjct: 132 SRQIVFCGSEDSLLSNKNPKSNRTVGFKSNTTKSVTLKKAKRELHVPKVSTSSNKE 182

[Close]

BLAST of ClCG05G006100.1 vs. NCBI nr
Match: gi|449450878|ref|XP_004143189.1| (PREDICTED: transcription elongation factor B polypeptide 3 [Cucumis sativus])

HSP 1 Score: 183.3 bits (464), Expect = 4.8e-43
Identity = 93/201 (46.27%), Postives = 132/201 (65.67%), Query Frame = 1


Query: 13  LNNLSINEAIDSLKFLGDVGDTDLNLLDHILPHCTIDQLMHIENSSKGRDLTPVTDKLWK 72
           L +L +N+AID+L+FLGDVG+TD++LLD ILPHCT+DQLMH+E SS+GRDLTPVTDKLWK
Sbjct: 10  LVDLCVNKAIDNLRFLGDVGETDIHLLDRILPHCTVDQLMHVEKSSEGRDLTPVTDKLWK 69

Query: 73  NFYEKKFGKNNSDFVIEGMKHKKKSFKWKQVYETKMEELEKKVKKIEAQYIQNRQKEKAK 132
            FYE++FGK ++  VIE M+ K+ +F+W Q+YE KME++EK   K   +  Q+  KE A+
Sbjct: 70  KFYERQFGKESTTTVIERMRQKRVAFRWIQLYEAKMEDIEKNESKAADRIKQSYLKENAR 129

Query: 133 KESRQIIFCEGSSPINKKLGFEGKPNEFGCNTNESKILNKSKRE----EQICKVPSMINN 192
           K+SRQI  C    P + K  F G    +     ++KIL K+K E    +++  + +   N
Sbjct: 130 KQSRQIQICSKVPPSSNKRSFGGSGYGYNVANTKNKILKKAKIEVLQSQEMKNIKAWRRN 189

Query: 193 --KKKQSFGGTTKPRHNTKPS 208
             +K      T KP  + + S
Sbjct: 190 AVQKSSDISSTKKPMFSGRES 210

[Close]

BLAST of ClCG05G006100.1 vs. NCBI nr
Match: gi|449450878|ref|XP_004143189.1| (PREDICTED: transcription elongation factor B polypeptide 3 [Cucumis sativus])

HSP 1 Score: 119.8 bits (299), Expect = 6.5e-24
Identity = 92/227 (40.53%), Postives = 121/227 (53.30%), Query Frame = 1


Query: 13  LNNLSINEAIDSLKFLGDVGDTDLNLLDHILPHCTIDQLMHIENSSKGRDLTPVTDKLWK 72
           L +L +N+AID+L+FLGDVG+TD++LLD ILPHCT+DQLMH+E SS+GRDLTPVTDK   
Sbjct: 10  LVDLCVNKAIDNLRFLGDVGETDIHLLDRILPHCTVDQLMHVEKSSEGRDLTPVTDK--- 69

Query: 73  NFYEKKFGKNNSDFVIEGMKHKKKSFKWKQVYETKMEELEKKVKKIEAQYIQNRQKEKAK 132
                                      WK+ YE +  + E     IE      RQK  A 
Sbjct: 70  --------------------------LWKKFYERQFGK-ESTTTVIERM----RQKRVAF 129

Query: 133 KESRQIIFCEGSSPINKKLGFEGKPNEFGCNTNESKILNKSKREEQIC-KVPSMINNKKK 192
           +  +  ++      I K    E K  +    +   +   K  R+ QIC KVP   N   K
Sbjct: 130 RWIQ--LYEAKMEDIEKN---ESKAADRIKQSYLKENARKQSRQIQICSKVPPSSN---K 189

Query: 193 QSFGGTTKPRH--NTKPSKIWKKAKREALQCIETKNLMAFRRNVMQK 237
           +SFGG+    +  NTK +KI KKAK E LQ  E KN+ A+RRN +QK
Sbjct: 190 RSFGGSGYGYNVANTK-NKILKKAKIEVLQSQEMKNIKAWRRNAVQK 193

HSP 2 Score: 178.7 bits (452), Expect = 1.2e-41
Identity = 84/164 (51.22%), Postives = 118/164 (71.95%), Query Frame = 1


Query: 13  LNNLSINEAIDSLKFLGDVGDTDLNLLDHILPHCTIDQLMHIENSSKGRDLTPVTDKLWK 72
           L +L +N+AID+++FLGDVG+TD++LL+ ILPHCT+DQLMH+E SS+GRDLTPVTDKLWK
Sbjct: 10  LVDLCVNKAIDNIRFLGDVGETDIHLLERILPHCTVDQLMHVEKSSEGRDLTPVTDKLWK 69

Query: 73  NFYEKKFGKNNSDFVIEGMKHKKKSFKWKQVYETKMEELEKKVKKIEAQYIQNRQKEKAK 132
            FYE++FGK ++  VIE M+ K+ +F+W Q+YE KM+++EK   K   +  Q+  KE A+
Sbjct: 70  KFYERQFGKESTTTVIERMRQKRVAFRWIQLYEAKMQDIEKNESKAADRIKQSYLKENAR 129

Query: 133 KESRQIIFCEGSSPINKKLGFEGKPNEFGCNTNESKILNKSKRE 177
           K+SRQI  C    P + K  F G    +     ++KIL K+K E
Sbjct: 130 KQSRQIQICSKVPPSSNKRSFGGSGYGYNVANTKNKILKKAKIE 173

[Close]

BLAST of ClCG05G006100.1 vs. NCBI nr
Match: gi|659112953|ref|XP_008456387.1| (PREDICTED: uncharacterized protein LOC103496337 [Cucumis melo])

HSP 1 Score: 117.5 bits (293), Expect = 3.2e-23
Identity = 90/227 (39.65%), Postives = 121/227 (53.30%), Query Frame = 1


Query: 13  LNNLSINEAIDSLKFLGDVGDTDLNLLDHILPHCTIDQLMHIENSSKGRDLTPVTDKLWK 72
           L +L +N+AID+++FLGDVG+TD++LL+ ILPHCT+DQLMH+E SS+GRDLTPVTDK   
Sbjct: 10  LVDLCVNKAIDNIRFLGDVGETDIHLLERILPHCTVDQLMHVEKSSEGRDLTPVTDK--- 69

Query: 73  NFYEKKFGKNNSDFVIEGMKHKKKSFKWKQVYETKMEELEKKVKKIEAQYIQNRQKEKAK 132
                                      WK+ YE +  + E     IE      RQK  A 
Sbjct: 70  --------------------------LWKKFYERQFGK-ESTTTVIERM----RQKRVAF 129

Query: 133 KESRQIIFCEGSSPINKKLGFEGKPNEFGCNTNESKILNKSKREEQIC-KVPSMINNKKK 192
           +  +  ++      I K    E K  +    +   +   K  R+ QIC KVP   N   K
Sbjct: 130 RWIQ--LYEAKMQDIEKN---ESKAADRIKQSYLKENARKQSRQIQICSKVPPSSN---K 189

Query: 193 QSFGGTTKPRH--NTKPSKIWKKAKREALQCIETKNLMAFRRNVMQK 237
           +SFGG+    +  NTK +KI KKAK E LQ  E KN+ A+RRN +QK
Sbjct: 190 RSFGGSGYGYNVANTK-NKILKKAKIEVLQSQEMKNIKAWRRNAVQK 193

HSP 2 Score: 164.9 bits (416), Expect = 1.8e-37
Identity = 84/194 (43.30%), Postives = 122/194 (62.89%), Query Frame = 1


Query: 13  LNNLSINEAIDSLKFLGDVGDTDLNLLDHILPHCTIDQLMHIENSSKGRDLTPVTDKLWK 72
           L +L ++ AI  +++LGDVG+TDL+LLD ILPHCT+DQLMH+E S++GRDL+P+TDKLWK
Sbjct: 19  LVDLCVSVAISHVRYLGDVGETDLHLLDQILPHCTMDQLMHVEKSTQGRDLSPITDKLWK 78

Query: 73  NFYEKKFGKNNSDFVIEGMKHKKKSFKWKQVYETKMEELEKKVKKIEAQYIQNRQKEKAK 132
            FYEK+FG+  ++  IE M+  K SF+WK++Y+ K+ E+ KK  +  A+  Q+ +KE  K
Sbjct: 79  TFYEKQFGEREANVAIERMRRYKVSFRWKKLYQAKLNEIAKKEDEAVARLRQSYKKEDDK 138

Query: 133 KESRQIIFCEGSSPINKKLGFEGKPNEFGCNTNESKILNKSKREEQICKVPSMINNKKKQ 192
           K+SRQI  C    P +K+  F      +  +  +S I+ KSK +    +    I   KK 
Sbjct: 139 KQSRQIRLCTKVPPSSKRSSFGSSGPGYNLSNVKSNIMKKSKIDFLKSREVKNIAAMKKI 198

Query: 193 SFGGTTKPRHNTKP 207
           SF          KP
Sbjct: 199 SFQRNNSATSLMKP 212

[Close]

BLAST of ClCG05G006100.1 vs. NCBI nr
Match: gi|823166854|ref|XP_012483379.1| (PREDICTED: transcription elongation factor B polypeptide 3 [Gossypium raimondii])

HSP 1 Score: 164.9 bits (416), Expect = 1.8e-37
Identity = 83/199 (41.71%), Postives = 129/199 (64.82%), Query Frame = 1


Query: 4   EVNKTTSSFLNNLSINEAIDSLKFLGDVGDTDLNLLDHILPHCTIDQLMHIENSSKGRDL 63
           E+ KT S  L +L +   ID++++LGDVG+TD +LL+ ILPHCT+DQL+H+E S+KGRDL
Sbjct: 15  EMRKTPS--LVDLCVRTVIDNVRYLGDVGETDSHLLERILPHCTVDQLLHVETSTKGRDL 74

Query: 64  TPVTDKLWKNFYEKKFGKNNSDFVIEGMKHKKKSFKWKQVYETKMEELEKKVKKIEAQYI 123
           + VTDKLWKNFYE +FG+ +   VIE MK KK SF+W+Q+YE K++++++   K   +  
Sbjct: 75  SSVTDKLWKNFYELQFGRESMQIVIERMKLKKVSFRWRQLYEAKLKDVQEAENKAIDRLK 134

Query: 124 QNRQKEKAKKESRQIIFCEGSSPINKKLGFEGKPNEFGCNTNESKILNKSK----REEQI 183
           Q  +KE A+K+SRQ+  C    P +K+  F G    +  +  +S I+ K+K    + +++
Sbjct: 135 QLYKKEDARKQSRQVQLCTKVPPSSKRSFFAGSGPGYNMSNVKSNIMKKAKIDLMKSQEV 194

Query: 184 CKVPSMINNKKKQSFGGTT 199
             + +M     +    GTT
Sbjct: 195 KNLAAMKKKAVQSHHSGTT 211

The following BLAST results are available for this feature:

BLAST of ClCG05G006100.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KJR8_CUCSA	5.1e-44	53.98	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G511010 PE=4 SV=1	[more]
A0A061DJY1_THECC	1.2e-37	43.16	Nucleus, subunit A, putative isoform 2 OS=Theobroma cacao GN=TCM_001808 PE=4 SV=...	[more]
A0A061DJY1_THECC	8.3e-26	37.17	Nucleus, subunit A, putative isoform 2 OS=Theobroma cacao GN=TCM_001808 PE=4 SV=...	[more]
A0A0D2RUW6_GOSRA	3.1e-25	36.17	Uncharacterized protein OS=Gossypium raimondii GN=B456_006G004800 PE=4 SV=1	[more]
F6H555_VITVI	4.2e-30	40.63	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0028g01320 PE=4 SV=...	[more]

BLAST of ClCG05G006100.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G42780.1	3.0e-27	31.94	FUNCTIONS IN: molecular_function unknown	[more]

BLAST of ClCG05G006100.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700193830\|gb\|KGN49034.1\|	7.4e-44	53.98	hypothetical protein Csa_6G511010 [Cucumis sativus]	[more]
gi\|449450878\|ref\|XP_004143189.1\|	4.8e-43	46.27	PREDICTED: transcription elongation factor B polypeptide 3 [Cucumis sativus]	[more]
gi\|449450878\|ref\|XP_004143189.1\|	6.5e-24	40.53	PREDICTED: transcription elongation factor B polypeptide 3 [Cucumis sativus]	[more]
gi\|659112953\|ref\|XP_008456387.1\|	3.2e-23	39.65	PREDICTED: uncharacterized protein LOC103496337 [Cucumis melo]	[more]
gi\|823166854\|ref\|XP_012483379.1\|	1.8e-37	41.71	PREDICTED: transcription elongation factor B polypeptide 3 [Gossypium raimondii]	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008152	metabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
ClCG05G006100	ClCG05G006100	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
ClCG05G006100.1	ClCG05G006100.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG05G006100.1.cds1	ClCG05G006100.1.cds1	CDS