ClCG05G006100 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG05G006100
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Transcription elongation factor B polypeptide 3
Location	CG_Chr05 : 6055938 .. 6056648 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGTGAAGAAGTAAATAAAACAACTTCATCATTTCTTAATAATCTTTCCATTAATGAAGCTATTGATAGTTTGAAGTTTCTTGGAGATGTTGGCGATACTGATTTAAATCTTCTAGATCATATTTTGCCACACTGTACTATTGACCAATTGATGCATATAGAAAACTCTTCCAAAGGAAGGGATCTCACACCCGTGACTGACAAGTTGTGGAAAAATTTCTATGAAAAAAAGTTCGGTAAGAACAATTCTGATTTTGTGATTGAGGGGATGAAACATAAGAAAAAATCATTTAAATGGAAGCAAGTGTATGAGACAAAGATGGAAGAGTTAGAAAAGAAGGTAAAGAAAATTGAGGCTCAATATATACAAAACCGTCAAAAGGAAAAAGCTAAAAAAGAAAGTCGTCAAATAATATTTTGTGAGGGTTCCTCTCCAATCAATAAGAAACTTGGATTTGAAGGAAAACCAAATGAGTTTGGATGCAATACCAACGAGAGCAAGATTTTGAATAAGTCAAAGAGAGAAGAACAAATTTGTAAAGTTCCATCTATGATCAATAATAAGAAGAAACAAAGCTTTGGAGGAACAACCAAACCTAGGCACAATACTAAGCCAAGCAAGATATGGAAGAAAGCAAAAAGAGAAGCGTTGCAGTGTATAGAGACGAAGAACCTAATGGCTTTTCGAAGAAATGTGATGCAAAAGTAG

mRNA sequence

ATGTGTGAAGAAGTAAATAAAACAACTTCATCATTTCTTAATAATCTTTCCATTAATGAAGCTATTGATAGTTTGAAGTTTCTTGGAGATGTTGGCGATACTGATTTAAATCTTCTAGATCATATTTTGCCACACTGTACTATTGACCAATTGATGCATATAGAAAACTCTTCCAAAGGAAGGGATCTCACACCCGTGACTGACAAGTTGTGGAAAAATTTCTATGAAAAAAAGTTCGGTAAGAACAATTCTGATTTTGTGATTGAGGGGATGAAACATAAGAAAAAATCATTTAAATGGAAGCAAGTGTATGAGACAAAGATGGAAGAGTTAGAAAAGAAGGTAAAGAAAATTGAGGCTCAATATATACAAAACCGTCAAAAGGAAAAAGCTAAAAAAGAAAGTCGTCAAATAATATTTTGTGAGGGTTCCTCTCCAATCAATAAGAAACTTGGATTTGAAGGAAAACCAAATGAGTTTGGATGCAATACCAACGAGAGCAAGATTTTGAATAAGTCAAAGAGAGAAGAACAAATTTGTAAAGTTCCATCTATGATCAATAATAAGAAGAAACAAAGCTTTGGAGGAACAACCAAACCTAGGCACAATACTAAGCCAAGCAAGATATGGAAGAAAGCAAAAAGAGAAGCGTTGCAGTGTATAGAGACGAAGAACCTAATGGCTTTTCGAAGAAATGTGATGCAAAAGTAG

Coding sequence (CDS)

ATGTGTGAAGAAGTAAATAAAACAACTTCATCATTTCTTAATAATCTTTCCATTAATGAAGCTATTGATAGTTTGAAGTTTCTTGGAGATGTTGGCGATACTGATTTAAATCTTCTAGATCATATTTTGCCACACTGTACTATTGACCAATTGATGCATATAGAAAACTCTTCCAAAGGAAGGGATCTCACACCCGTGACTGACAAGTTGTGGAAAAATTTCTATGAAAAAAAGTTCGGTAAGAACAATTCTGATTTTGTGATTGAGGGGATGAAACATAAGAAAAAATCATTTAAATGGAAGCAAGTGTATGAGACAAAGATGGAAGAGTTAGAAAAGAAGGTAAAGAAAATTGAGGCTCAATATATACAAAACCGTCAAAAGGAAAAAGCTAAAAAAGAAAGTCGTCAAATAATATTTTGTGAGGGTTCCTCTCCAATCAATAAGAAACTTGGATTTGAAGGAAAACCAAATGAGTTTGGATGCAATACCAACGAGAGCAAGATTTTGAATAAGTCAAAGAGAGAAGAACAAATTTGTAAAGTTCCATCTATGATCAATAATAAGAAGAAACAAAGCTTTGGAGGAACAACCAAACCTAGGCACAATACTAAGCCAAGCAAGATATGGAAGAAAGCAAAAAGAGAAGCGTTGCAGTGTATAGAGACGAAGAACCTAATGGCTTTTCGAAGAAATGTGATGCAAAAGTAG

Protein sequence

MCEEVNKTTSSFLNNLSINEAIDSLKFLGDVGDTDLNLLDHILPHCTIDQLMHIENSSKGRDLTPVTDKLWKNFYEKKFGKNNSDFVIEGMKHKKKSFKWKQVYETKMEELEKKVKKIEAQYIQNRQKEKAKKESRQIIFCEGSSPINKKLGFEGKPNEFGCNTNESKILNKSKREEQICKVPSMINNKKKQSFGGTTKPRHNTKPSKIWKKAKREALQCIETKNLMAFRRNVMQK

Homology

[Close]

BLAST of ClCG05G006100 vs. TrEMBL
Match: A0A0A0KJR8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G511010 PE=4 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 5.1e-44
Identity = 95/176 (53.98%), Postives = 124/176 (70.45%), Query Frame = 1


Query: 15  NLSINEAIDSLKFLGDVGDTDLNLLDHILPHCTIDQLMHIENSSKGRDLTPVTDKLWKNF 74
           N  +N+AIDS+KFLGDVGDTDL  L+ IL HCT DQL+HIEN SKGRDLTP+T+KLWKNF
Sbjct: 12  NSDVNKAIDSVKFLGDVGDTDLRSLESILSHCTADQLLHIENCSKGRDLTPITNKLWKNF 71

Query: 75  YEKKFGKNNSDFVIEGMKHKKKSFKWKQVYETKMEELEKKVKKIEAQYIQNRQKEKAKKE 134
           YE+KFGK++ D V+     K ++FKW  +Y  KM+ELE + KKIE + IQ+ QKEKA+K+
Sbjct: 72  YERKFGKDDVDIVV-----KNETFKWMDLYVAKMKELENRAKKIEDRIIQSYQKEKARKQ 131

Query: 135 SRQIIFC-EGSSPINKKLGFEGKPNEFGCNTNESKILNKSKREEQICKVPSMINNK 190
           SRQI+FC    S ++ K     +   F  NT +S  L K+KRE  + KV +  N +
Sbjct: 132 SRQIVFCGSEDSLLSNKNPKSNRTVGFKSNTTKSVTLKKAKRELHVPKVSTSSNKE 182

[Close]

BLAST of ClCG05G006100 vs. TrEMBL
Match: A0A061DJY1_THECC (Nucleus, subunit A, putative isoform 2 OS=Theobroma cacao GN=TCM_001808 PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 1.2e-37
Identity = 82/190 (43.16%), Postives = 128/190 (67.37%), Query Frame = 1


Query: 13  LNNLSINEAIDSLKFLGDVGDTDLNLLDHILPHCTIDQLMHIENSSKGRDLTPVTDKLWK 72
           L +L I  AID++++LGDVG+TD +LL+ ILPHCT+DQL+H+E S+KGRDL+PVTDKLWK
Sbjct: 22  LVDLCIRTAIDNVRYLGDVGETDSHLLERILPHCTMDQLIHVEKSTKGRDLSPVTDKLWK 81

Query: 73  NFYEKKFGKNNSDFVIEGMKHKKKSFKWKQVYETKMEELEKKVKKIEAQYIQNRQKEKAK 132
           NFYE +FG+ +++ VIE MK KK SF+W+Q+YE K++++++   K   +  Q  +KE A+
Sbjct: 82  NFYELQFGRASTNLVIERMKLKKVSFRWRQLYEAKLKDVQEAENKAIDRLKQLYKKEDAR 141

Query: 133 KESRQIIFCEGSSPINKKLGFEGKPNEFGCNTNESKILNKSK----REEQICKVPSMINN 192
           K+SRQ+  C    P +K+  F G    +  +  +S I+ K+K    + +++  + +M   
Sbjct: 142 KQSRQVQLCTKVPPSSKRSFFAGSGPGYNLSYVKSNIMKKAKIDLMKSQEVKNLAAMKKK 201

Query: 193 KKKQSFGGTT 199
             +    GTT
Sbjct: 202 AVQTHHRGTT 211

[Close]

BLAST of ClCG05G006100 vs. TrEMBL
Match: A0A061DJY1_THECC (Nucleus, subunit A, putative isoform 2 OS=Theobroma cacao GN=TCM_001808 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 8.3e-26
Identity = 84/226 (37.17%), Postives = 122/226 (53.98%), Query Frame = 1


Query: 13  LNNLSINEAIDSLKFLGDVGDTDLNLLDHILPHCTIDQLMHIENSSKGRDLTPVTDKLWK 72
           L +L I  AID++++LGDVG+TD +LL+ ILPHCT+DQL+H+E S+KGRDL+PVTDKLWK
Sbjct: 22  LVDLCIRTAIDNVRYLGDVGETDSHLLERILPHCTMDQLIHVEKSTKGRDLSPVTDKLWK 81

Query: 73  NFYEKKFGKNNSDFVIEGMKHKKKSFKWKQVYETKMEELEKKVKKIEAQYIQNRQKEKAK 132
           NFYE +FG+ +++ VIE MK                    KKV     Q  + + K+  +
Sbjct: 82  NFYELQFGRASTNLVIERMK-------------------LKKVSFRWRQLYEAKLKDVQE 141

Query: 133 KESRQIIFCEGSSPINKKLGFEGKPNEFGCNTNESKILNKSKREEQIC-KVPSMINNKKK 192
            E++ I   +    + KK                 +   K  R+ Q+C KVP       K
Sbjct: 142 AENKAI---DRLKQLYKK-----------------EDARKQSRQVQLCTKVPP----SSK 201

Query: 193 QSFGGTTKPRHNTK--PSKIWKKAKREALQCIETKNLMAFRRNVMQ 236
           +SF   + P +N     S I KKAK + ++  E KNL A ++  +Q
Sbjct: 202 RSFFAGSGPGYNLSYVKSNIMKKAKIDLMKSQEVKNLAAMKKKAVQ 204

HSP 2 Score: 164.9 bits (416), Expect = 1.2e-37
Identity = 83/199 (41.71%), Postives = 129/199 (64.82%), Query Frame = 1


Query: 4   EVNKTTSSFLNNLSINEAIDSLKFLGDVGDTDLNLLDHILPHCTIDQLMHIENSSKGRDL 63
           E+ KT S  L +L +   ID++++LGDVG+TD +LL+ ILPHCT+DQL+H+E S+KGRDL
Sbjct: 15  EMRKTPS--LVDLCVRTVIDNVRYLGDVGETDSHLLERILPHCTVDQLLHVETSTKGRDL 74

Query: 64  TPVTDKLWKNFYEKKFGKNNSDFVIEGMKHKKKSFKWKQVYETKMEELEKKVKKIEAQYI 123
           + VTDKLWKNFYE +FG+ +   VIE MK KK SF+W+Q+YE K++++++   K   +  
Sbjct: 75  SSVTDKLWKNFYELQFGRESMQIVIERMKLKKVSFRWRQLYEAKLKDVQEAENKAIDRLK 134

Query: 124 QNRQKEKAKKESRQIIFCEGSSPINKKLGFEGKPNEFGCNTNESKILNKSK----REEQI 183
           Q  +KE A+K+SRQ+  C    P +K+  F G    +  +  +S I+ K+K    + +++
Sbjct: 135 QLYKKEDARKQSRQVQLCTKVPPSSKRSFFAGSGPGYNMSNVKSNIMKKAKIDLMKSQEV 194

Query: 184 CKVPSMINNKKKQSFGGTT 199
             + +M     +    GTT
Sbjct: 195 KNLAAMKKKAVQSHHSGTT 211

[Close]

BLAST of ClCG05G006100 vs. TrEMBL
Match: A0A0D2RUW6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G004800 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 3.1e-25
Identity = 85/235 (36.17%), Postives = 123/235 (52.34%), Query Frame = 1


Query: 4   EVNKTTSSFLNNLSINEAIDSLKFLGDVGDTDLNLLDHILPHCTIDQLMHIENSSKGRDL 63
           E+ KT S  L +L +   ID++++LGDVG+TD +LL+ ILPHCT+DQL+H+E S+KGRDL
Sbjct: 15  EMRKTPS--LVDLCVRTVIDNVRYLGDVGETDSHLLERILPHCTVDQLLHVETSTKGRDL 74

Query: 64  TPVTDKLWKNFYEKKFGKNNSDFVIEGMKHKKKSFKWKQVYETKMEELEKKVKKIEAQYI 123
           + VTDKLWKNFYE +FG+ +   VIE MK                    KKV     Q  
Sbjct: 75  SSVTDKLWKNFYELQFGRESMQIVIERMK-------------------LKKVSFRWRQLY 134

Query: 124 QNRQKEKAKKESRQIIFCEGSSPINKKLGFEGKPNEFGCNTNESKILNKSKREEQIC-KV 183
           + + K+  + E++ I   +    + KK                 +   K  R+ Q+C KV
Sbjct: 135 EAKLKDVQEAENKAI---DRLKQLYKK-----------------EDARKQSRQVQLCTKV 194

Query: 184 PSMINNKKKQSFGGTTKPRHNTK--PSKIWKKAKREALQCIETKNLMAFRRNVMQ 236
           P       K+SF   + P +N     S I KKAK + ++  E KNL A ++  +Q
Sbjct: 195 PP----SSKRSFFAGSGPGYNMSNVKSNIMKKAKIDLMKSQEVKNLAAMKKKAVQ 204

HSP 2 Score: 164.5 bits (415), Expect = 1.6e-37
Identity = 82/164 (50.00%), Postives = 115/164 (70.12%), Query Frame = 1


Query: 13  LNNLSINEAIDSLKFLGDVGDTDLNLLDHILPHCTIDQLMHIENSSKGRDLTPVTDKLWK 72
           L +L I  AID++++LGDVG+TD+NLLDHILPHCT+DQLMHIE  ++ RDL+ VTDKLWK
Sbjct: 72  LVDLCIRTAIDNVRYLGDVGETDINLLDHILPHCTVDQLMHIEKCTEERDLSEVTDKLWK 131

Query: 73  NFYEKKFGKNNSDFVIEGMKHKKKSFKWKQVYETKMEELEKKVKKIEAQYIQNRQKEKAK 132
            FYEK+FG  +++ V+E MK KK SFKW ++YE K+++ ++  KK   +  Q  QKE A+
Sbjct: 132 KFYEKEFGVKSTNLVVERMKLKKVSFKWSKLYEAKLKDRDEAQKKSFDRIKQLYQKEDAR 191

Query: 133 KESRQIIFCEGSSPINKKLGFEGKPNEFGCNTNESKILNKSKRE 177
           K+SRQ+  C    P + K  F G P   G +  +S ++ K+K E
Sbjct: 192 KQSRQVKICTKVPPSSNKRCFYGGP---GTSNLKSNLMKKAKVE 232

[Close]

BLAST of ClCG05G006100 vs. TrEMBL
Match: F6H555_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0028g01320 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 4.2e-30
Identity = 91/224 (40.62%), Postives = 126/224 (56.25%), Query Frame = 1


Query: 13  LNNLSINEAIDSLKFLGDVGDTDLNLLDHILPHCTIDQLMHIENSSKGRDLTPVTDKLWK 72
           L +L I  AID++++LGDVG+TD+NLLDHILPHCT+DQLMHIE  ++ RDL+ VTDKLWK
Sbjct: 72  LVDLCIRTAIDNVRYLGDVGETDINLLDHILPHCTVDQLMHIEKCTEERDLSEVTDKLWK 131

Query: 73  NFYEKKFGKNNSDFVIEGMKHKKKSFKWKQVYETKMEELEKKVKKIEAQYIQNRQKEKAK 132
            FYEK+FG  +++ V+E MK KK SFKW               K  EA+    + +++A+
Sbjct: 132 KFYEKEFGVKSTNLVVERMKLKKVSFKW--------------SKLYEAKL---KDRDEAQ 191

Query: 133 KESRQIIFCEGSSPINKKLGFEGKPNEFGCNTNESKILNKSKREEQIC-KVPSMINNKKK 192
           K+S   I         K+L              + +   K  R+ +IC KVP   N  K+
Sbjct: 192 KKSFDRI---------KQL-------------YQKEDARKQSRQVKICTKVPPSSN--KR 251

Query: 193 QSFGGTTKPRHNTKPSKIWKKAKREALQCIETKNLMAFRRNVMQ 236
             +GG   P  +   S + KKAK E L   E KNL A ++  +Q
Sbjct: 252 CFYGG---PGTSNLKSNLMKKAKVECLNSPEVKNLAAMKKQALQ 251

HSP 2 Score: 164.1 bits (414), Expect = 2.1e-37
Identity = 83/199 (41.71%), Postives = 129/199 (64.82%), Query Frame = 1


Query: 4   EVNKTTSSFLNNLSINEAIDSLKFLGDVGDTDLNLLDHILPHCTIDQLMHIENSSKGRDL 63
           E+ KT S  L +L +   ID++++LGDVG+TD +LL+ ILPHCT+DQL+H+E S+KGRDL
Sbjct: 15  EMRKTPS--LVDLCVRTVIDNVRYLGDVGETDSHLLERILPHCTVDQLLHVEKSTKGRDL 74

Query: 64  TPVTDKLWKNFYEKKFGKNNSDFVIEGMKHKKKSFKWKQVYETKMEELEKKVKKIEAQYI 123
           + VTDKLWKNFYE +FG+ +   VIE MK KK SF+W+Q+YE K++++++   K   +  
Sbjct: 75  SSVTDKLWKNFYELQFGRESMKIVIERMKLKKVSFRWRQLYEAKLKDVQEAENKAIDRLK 134

Query: 124 QNRQKEKAKKESRQIIFCEGSSPINKKLGFEGKPNEFGCNTNESKILNKSK----REEQI 183
           Q  +KE A+K+SRQ+  C    P +K+  F G    +  +  +S I+ K+K    + +++
Sbjct: 135 QLYKKEDARKQSRQVQLCTKVPPSSKRSFFAGSGPGYNMSNVKSNIMKKAKIDLMKSQEV 194

Query: 184 CKVPSMINNKKKQSFGGTT 199
             + +M     +    GTT
Sbjct: 195 KNLAAMKKKAVQSYHSGTT 211

[Close]

BLAST of ClCG05G006100 vs. TAIR10
Match: AT2G42780.1 (AT2G42780.1 FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 119.4 bits (298), Expect = 3.0e-27
Identity = 61/191 (31.94%), Postives = 114/191 (59.69%), Query Frame = 1


Query: 13  LNNLSINEAIDSLKFLGDVGDTDLNLLDHILPHCTIDQLMHIENSSKGRDLTPVTDKLWK 72
           L +L + +AID++K++G VG  D  LL+ IL HCT++QL HIE+++   DL+P+TDK WK
Sbjct: 13  LVDLCVRKAIDNVKYIGYVGGVDFQLLEQILQHCTLEQLKHIEDATDDTDLSPITDKFWK 72

Query: 73  NFYEKKFGKNNSDFVIEGMK-HKKKSFKWKQVYETKMEELEKKVKKIEAQYIQNRQKEKA 132
            FY+K +G+ +   +IE ++ +K   FKW+ +YE K+  +++K K++  +  +  + E  
Sbjct: 73  GFYKKHYGEEDMKDLIEDLEWNKVNDFKWRNLYELKVIAVQQKEKELGGRLKERYKDENE 132

Query: 133 KKESRQIIFCEGSSPINKKLGFEGKPNEFGCNTNESKILNKSK----REEQICKVPSMIN 192
           +K+SRQ   C   +P +K+  +    + +     +S I+ K+K    + +++  + ++  
Sbjct: 133 RKQSRQTKVC-SKAPPSKRPFWGNSASGYNLGHVKSNIMKKAKIDLLKSQEVKNLTAIKR 192

Query: 193 NKKKQSFGGTT 199
           N  ++SF  +T
Sbjct: 193 NTIQKSFSIST 202

HSP 2 Score: 96.7 bits (239), Expect = 2.1e-20
Identity = 79/234 (33.76%), Postives = 113/234 (48.29%), Query Frame = 1


Query: 13  LNNLSINEAIDSLKFLGDVGDTDLNLLDHILPHCTIDQLMHIENSSKGRDLTPVTDKLWK 72
           L +L + +AID++K++G VG  D  LL+ IL HCT++QL HIE+++   DL+P+TDK WK
Sbjct: 13  LVDLCVRKAIDNVKYIGYVGGVDFQLLEQILQHCTLEQLKHIEDATDDTDLSPITDKFWK 72

Query: 73  NFYEKKFGKNNSDFVIEGMKHKKKSFKWKQVYETKMEELE-KKVKKI------EAQYIQN 132
            FY+K +G+       E MK               +E+LE  KV         E + I  
Sbjct: 73  GFYKKHYGE-------EDMKDL-------------IEDLEWNKVNDFKWRNLYELKVIAV 132

Query: 133 RQKEKAKKESRQIIFCEGSSPINKKLGFEGKPNEFGCNTNESKILNKSKREEQIC-KVPS 192
           +QKEK                   +LG  G+  E   + NE     K  R+ ++C K P 
Sbjct: 133 QQKEK-------------------ELG--GRLKERYKDENE----RKQSRQTKVCSKAPP 192

Query: 193 MINNKKKQSFGGTTKPRHNTK--PSKIWKKAKREALQCIETKNLMAFRRNVMQK 237
                 K+ F G +   +N     S I KKAK + L+  E KNL A +RN +QK
Sbjct: 193 -----SKRPFWGNSASGYNLGHVKSNIMKKAKIDLLKSQEVKNLTAIKRNTIQK 196

[Close]

BLAST of ClCG05G006100 vs. NCBI nr
Match: gi|700193830|gb|KGN49034.1| (hypothetical protein Csa_6G511010 [Cucumis sativus])

HSP 1 Score: 186.0 bits (471), Expect = 7.4e-44
Identity = 95/176 (53.98%), Postives = 124/176 (70.45%), Query Frame = 1


Query: 15  NLSINEAIDSLKFLGDVGDTDLNLLDHILPHCTIDQLMHIENSSKGRDLTPVTDKLWKNF 74
           N  +N+AIDS+KFLGDVGDTDL  L+ IL HCT DQL+HIEN SKGRDLTP+T+KLWKNF
Sbjct: 12  NSDVNKAIDSVKFLGDVGDTDLRSLESILSHCTADQLLHIENCSKGRDLTPITNKLWKNF 71

Query: 75  YEKKFGKNNSDFVIEGMKHKKKSFKWKQVYETKMEELEKKVKKIEAQYIQNRQKEKAKKE 134
           YE+KFGK++ D V+     K ++FKW  +Y  KM+ELE + KKIE + IQ+ QKEKA+K+
Sbjct: 72  YERKFGKDDVDIVV-----KNETFKWMDLYVAKMKELENRAKKIEDRIIQSYQKEKARKQ 131

Query: 135 SRQIIFC-EGSSPINKKLGFEGKPNEFGCNTNESKILNKSKREEQICKVPSMINNK 190
           SRQI+FC    S ++ K     +   F  NT +S  L K+KRE  + KV +  N +
Sbjct: 132 SRQIVFCGSEDSLLSNKNPKSNRTVGFKSNTTKSVTLKKAKRELHVPKVSTSSNKE 182

[Close]

BLAST of ClCG05G006100 vs. NCBI nr
Match: gi|449450878|ref|XP_004143189.1| (PREDICTED: transcription elongation factor B polypeptide 3 [Cucumis sativus])

HSP 1 Score: 183.3 bits (464), Expect = 4.8e-43
Identity = 93/201 (46.27%), Postives = 132/201 (65.67%), Query Frame = 1


Query: 13  LNNLSINEAIDSLKFLGDVGDTDLNLLDHILPHCTIDQLMHIENSSKGRDLTPVTDKLWK 72
           L +L +N+AID+L+FLGDVG+TD++LLD ILPHCT+DQLMH+E SS+GRDLTPVTDKLWK
Sbjct: 10  LVDLCVNKAIDNLRFLGDVGETDIHLLDRILPHCTVDQLMHVEKSSEGRDLTPVTDKLWK 69

Query: 73  NFYEKKFGKNNSDFVIEGMKHKKKSFKWKQVYETKMEELEKKVKKIEAQYIQNRQKEKAK 132
            FYE++FGK ++  VIE M+ K+ +F+W Q+YE KME++EK   K   +  Q+  KE A+
Sbjct: 70  KFYERQFGKESTTTVIERMRQKRVAFRWIQLYEAKMEDIEKNESKAADRIKQSYLKENAR 129

Query: 133 KESRQIIFCEGSSPINKKLGFEGKPNEFGCNTNESKILNKSKRE----EQICKVPSMINN 192
           K+SRQI  C    P + K  F G    +     ++KIL K+K E    +++  + +   N
Sbjct: 130 KQSRQIQICSKVPPSSNKRSFGGSGYGYNVANTKNKILKKAKIEVLQSQEMKNIKAWRRN 189

Query: 193 --KKKQSFGGTTKPRHNTKPS 208
             +K      T KP  + + S
Sbjct: 190 AVQKSSDISSTKKPMFSGRES 210

[Close]

BLAST of ClCG05G006100 vs. NCBI nr
Match: gi|449450878|ref|XP_004143189.1| (PREDICTED: transcription elongation factor B polypeptide 3 [Cucumis sativus])

HSP 1 Score: 119.8 bits (299), Expect = 6.5e-24
Identity = 92/227 (40.53%), Postives = 121/227 (53.30%), Query Frame = 1


Query: 13  LNNLSINEAIDSLKFLGDVGDTDLNLLDHILPHCTIDQLMHIENSSKGRDLTPVTDKLWK 72
           L +L +N+AID+L+FLGDVG+TD++LLD ILPHCT+DQLMH+E SS+GRDLTPVTDK   
Sbjct: 10  LVDLCVNKAIDNLRFLGDVGETDIHLLDRILPHCTVDQLMHVEKSSEGRDLTPVTDK--- 69

Query: 73  NFYEKKFGKNNSDFVIEGMKHKKKSFKWKQVYETKMEELEKKVKKIEAQYIQNRQKEKAK 132
                                      WK+ YE +  + E     IE      RQK  A 
Sbjct: 70  --------------------------LWKKFYERQFGK-ESTTTVIERM----RQKRVAF 129

Query: 133 KESRQIIFCEGSSPINKKLGFEGKPNEFGCNTNESKILNKSKREEQIC-KVPSMINNKKK 192
           +  +  ++      I K    E K  +    +   +   K  R+ QIC KVP   N   K
Sbjct: 130 RWIQ--LYEAKMEDIEKN---ESKAADRIKQSYLKENARKQSRQIQICSKVPPSSN---K 189

Query: 193 QSFGGTTKPRH--NTKPSKIWKKAKREALQCIETKNLMAFRRNVMQK 237
           +SFGG+    +  NTK +KI KKAK E LQ  E KN+ A+RRN +QK
Sbjct: 190 RSFGGSGYGYNVANTK-NKILKKAKIEVLQSQEMKNIKAWRRNAVQK 193

HSP 2 Score: 178.7 bits (452), Expect = 1.2e-41
Identity = 84/164 (51.22%), Postives = 118/164 (71.95%), Query Frame = 1


Query: 13  LNNLSINEAIDSLKFLGDVGDTDLNLLDHILPHCTIDQLMHIENSSKGRDLTPVTDKLWK 72
           L +L +N+AID+++FLGDVG+TD++LL+ ILPHCT+DQLMH+E SS+GRDLTPVTDKLWK
Sbjct: 10  LVDLCVNKAIDNIRFLGDVGETDIHLLERILPHCTVDQLMHVEKSSEGRDLTPVTDKLWK 69

Query: 73  NFYEKKFGKNNSDFVIEGMKHKKKSFKWKQVYETKMEELEKKVKKIEAQYIQNRQKEKAK 132
            FYE++FGK ++  VIE M+ K+ +F+W Q+YE KM+++EK   K   +  Q+  KE A+
Sbjct: 70  KFYERQFGKESTTTVIERMRQKRVAFRWIQLYEAKMQDIEKNESKAADRIKQSYLKENAR 129

Query: 133 KESRQIIFCEGSSPINKKLGFEGKPNEFGCNTNESKILNKSKRE 177
           K+SRQI  C    P + K  F G    +     ++KIL K+K E
Sbjct: 130 KQSRQIQICSKVPPSSNKRSFGGSGYGYNVANTKNKILKKAKIE 173

[Close]

BLAST of ClCG05G006100 vs. NCBI nr
Match: gi|659112953|ref|XP_008456387.1| (PREDICTED: uncharacterized protein LOC103496337 [Cucumis melo])

HSP 1 Score: 117.5 bits (293), Expect = 3.2e-23
Identity = 90/227 (39.65%), Postives = 121/227 (53.30%), Query Frame = 1


Query: 13  LNNLSINEAIDSLKFLGDVGDTDLNLLDHILPHCTIDQLMHIENSSKGRDLTPVTDKLWK 72
           L +L +N+AID+++FLGDVG+TD++LL+ ILPHCT+DQLMH+E SS+GRDLTPVTDK   
Sbjct: 10  LVDLCVNKAIDNIRFLGDVGETDIHLLERILPHCTVDQLMHVEKSSEGRDLTPVTDK--- 69

Query: 73  NFYEKKFGKNNSDFVIEGMKHKKKSFKWKQVYETKMEELEKKVKKIEAQYIQNRQKEKAK 132
                                      WK+ YE +  + E     IE      RQK  A 
Sbjct: 70  --------------------------LWKKFYERQFGK-ESTTTVIERM----RQKRVAF 129

Query: 133 KESRQIIFCEGSSPINKKLGFEGKPNEFGCNTNESKILNKSKREEQIC-KVPSMINNKKK 192
           +  +  ++      I K    E K  +    +   +   K  R+ QIC KVP   N   K
Sbjct: 130 RWIQ--LYEAKMQDIEKN---ESKAADRIKQSYLKENARKQSRQIQICSKVPPSSN---K 189

Query: 193 QSFGGTTKPRH--NTKPSKIWKKAKREALQCIETKNLMAFRRNVMQK 237
           +SFGG+    +  NTK +KI KKAK E LQ  E KN+ A+RRN +QK
Sbjct: 190 RSFGGSGYGYNVANTK-NKILKKAKIEVLQSQEMKNIKAWRRNAVQK 193

HSP 2 Score: 164.9 bits (416), Expect = 1.8e-37
Identity = 84/194 (43.30%), Postives = 122/194 (62.89%), Query Frame = 1


Query: 13  LNNLSINEAIDSLKFLGDVGDTDLNLLDHILPHCTIDQLMHIENSSKGRDLTPVTDKLWK 72
           L +L ++ AI  +++LGDVG+TDL+LLD ILPHCT+DQLMH+E S++GRDL+P+TDKLWK
Sbjct: 19  LVDLCVSVAISHVRYLGDVGETDLHLLDQILPHCTMDQLMHVEKSTQGRDLSPITDKLWK 78

Query: 73  NFYEKKFGKNNSDFVIEGMKHKKKSFKWKQVYETKMEELEKKVKKIEAQYIQNRQKEKAK 132
            FYEK+FG+  ++  IE M+  K SF+WK++Y+ K+ E+ KK  +  A+  Q+ +KE  K
Sbjct: 79  TFYEKQFGEREANVAIERMRRYKVSFRWKKLYQAKLNEIAKKEDEAVARLRQSYKKEDDK 138

Query: 133 KESRQIIFCEGSSPINKKLGFEGKPNEFGCNTNESKILNKSKREEQICKVPSMINNKKKQ 192
           K+SRQI  C    P +K+  F      +  +  +S I+ KSK +    +    I   KK 
Sbjct: 139 KQSRQIRLCTKVPPSSKRSSFGSSGPGYNLSNVKSNIMKKSKIDFLKSREVKNIAAMKKI 198

Query: 193 SFGGTTKPRHNTKP 207
           SF          KP
Sbjct: 199 SFQRNNSATSLMKP 212

[Close]

BLAST of ClCG05G006100 vs. NCBI nr
Match: gi|823166854|ref|XP_012483379.1| (PREDICTED: transcription elongation factor B polypeptide 3 [Gossypium raimondii])

HSP 1 Score: 164.9 bits (416), Expect = 1.8e-37
Identity = 83/199 (41.71%), Postives = 129/199 (64.82%), Query Frame = 1


Query: 4   EVNKTTSSFLNNLSINEAIDSLKFLGDVGDTDLNLLDHILPHCTIDQLMHIENSSKGRDL 63
           E+ KT S  L +L +   ID++++LGDVG+TD +LL+ ILPHCT+DQL+H+E S+KGRDL
Sbjct: 15  EMRKTPS--LVDLCVRTVIDNVRYLGDVGETDSHLLERILPHCTVDQLLHVETSTKGRDL 74

Query: 64  TPVTDKLWKNFYEKKFGKNNSDFVIEGMKHKKKSFKWKQVYETKMEELEKKVKKIEAQYI 123
           + VTDKLWKNFYE +FG+ +   VIE MK KK SF+W+Q+YE K++++++   K   +  
Sbjct: 75  SSVTDKLWKNFYELQFGRESMQIVIERMKLKKVSFRWRQLYEAKLKDVQEAENKAIDRLK 134

Query: 124 QNRQKEKAKKESRQIIFCEGSSPINKKLGFEGKPNEFGCNTNESKILNKSK----REEQI 183
           Q  +KE A+K+SRQ+  C    P +K+  F G    +  +  +S I+ K+K    + +++
Sbjct: 135 QLYKKEDARKQSRQVQLCTKVPPSSKRSFFAGSGPGYNMSNVKSNIMKKAKIDLMKSQEV 194

Query: 184 CKVPSMINNKKKQSFGGTT 199
             + +M     +    GTT
Sbjct: 195 KNLAAMKKKAVQSHHSGTT 211

The following BLAST results are available for this feature:

BLAST of ClCG05G006100 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KJR8_CUCSA	5.1e-44	53.98	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G511010 PE=4 SV=1	[more]
A0A061DJY1_THECC	1.2e-37	43.16	Nucleus, subunit A, putative isoform 2 OS=Theobroma cacao GN=TCM_001808 PE=4 SV=...	[more]
A0A061DJY1_THECC	8.3e-26	37.17	Nucleus, subunit A, putative isoform 2 OS=Theobroma cacao GN=TCM_001808 PE=4 SV=...	[more]
A0A0D2RUW6_GOSRA	3.1e-25	36.17	Uncharacterized protein OS=Gossypium raimondii GN=B456_006G004800 PE=4 SV=1	[more]
F6H555_VITVI	4.2e-30	40.63	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0028g01320 PE=4 SV=...	[more]

BLAST of ClCG05G006100 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G42780.1	3.0e-27	31.94	FUNCTIONS IN: molecular_function unknown	[more]

BLAST of ClCG05G006100 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700193830\|gb\|KGN49034.1\|	7.4e-44	53.98	hypothetical protein Csa_6G511010 [Cucumis sativus]	[more]
gi\|449450878\|ref\|XP_004143189.1\|	4.8e-43	46.27	PREDICTED: transcription elongation factor B polypeptide 3 [Cucumis sativus]	[more]
gi\|449450878\|ref\|XP_004143189.1\|	6.5e-24	40.53	PREDICTED: transcription elongation factor B polypeptide 3 [Cucumis sativus]	[more]
gi\|659112953\|ref\|XP_008456387.1\|	3.2e-23	39.65	PREDICTED: uncharacterized protein LOC103496337 [Cucumis melo]	[more]
gi\|823166854\|ref\|XP_012483379.1\|	1.8e-37	41.71	PREDICTED: transcription elongation factor B polypeptide 3 [Gossypium raimondii]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008152	metabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG05G006100.1	ClCG05G006100.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG05G006100	Cucurbita pepo (Zucchini)	cpewcgB139
ClCG05G006100	Cucurbita pepo (Zucchini)	cpewcgB291
ClCG05G006100	Cucurbita pepo (Zucchini)	cpewcgB559
ClCG05G006100	Cucurbita pepo (Zucchini)	cpewcgB787
ClCG05G006100	Bottle gourd (USVL1VR-Ls)	lsiwcgB017
ClCG05G006100	Bottle gourd (USVL1VR-Ls)	lsiwcgB333
ClCG05G006100	Cucumber (Gy14) v2	cgybwcgB203
ClCG05G006100	Melon (DHL92) v3.6.1	medwcgB115
ClCG05G006100	Melon (DHL92) v3.6.1	medwcgB416
ClCG05G006100	Silver-seed gourd	carwcgB0072
ClCG05G006100	Silver-seed gourd	carwcgB0588
ClCG05G006100	Silver-seed gourd	carwcgB0680
ClCG05G006100	Silver-seed gourd	carwcgB0807
ClCG05G006100	Cucumber (Chinese Long) v3	cucwcgB225
ClCG05G006100	Watermelon (97103) v2	wcgwmbB229
ClCG05G006100	Watermelon (97103) v2	wcgwmbB238
ClCG05G006100	Wax gourd	wcgwgoB418
ClCG05G006100	Wax gourd	wcgwgoB426
ClCG05G006100	Watermelon (Charleston Gray)	wcgwcgB160
ClCG05G006100	Cucumber (Gy14) v1	cgywcgB451
ClCG05G006100	Cucurbita maxima (Rimu)	cmawcgB003
ClCG05G006100	Cucurbita maxima (Rimu)	cmawcgB233
ClCG05G006100	Cucurbita maxima (Rimu)	cmawcgB320
ClCG05G006100	Cucurbita maxima (Rimu)	cmawcgB737
ClCG05G006100	Cucurbita maxima (Rimu)	cmawcgB796
ClCG05G006100	Cucurbita moschata (Rifu)	cmowcgB219
ClCG05G006100	Cucurbita moschata (Rifu)	cmowcgB316
ClCG05G006100	Cucurbita moschata (Rifu)	cmowcgB743
ClCG05G006100	Cucurbita moschata (Rifu)	cmowcgB792
ClCG05G006100	Wild cucumber (PI 183967)	cpiwcgB069
ClCG05G006100	Wild cucumber (PI 183967)	cpiwcgB226
ClCG05G006100	Cucumber (Chinese Long) v2	cuwcgB222
ClCG05G006100	Melon (DHL92) v3.5.1	mewcgB121
ClCG05G006100	Melon (DHL92) v3.5.1	mewcgB427
ClCG05G006100	Watermelon (97103) v1	wcgwmB286
ClCG05G006100	Watermelon (97103) v1	wcgwmB311