ClCG05G006090.1 (mRNA) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG05G006090.1
Type	mRNA
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Transcription elongation factor B polypeptide 3
Location	CG_Chr05 : 6051278 .. 6051988 (+)
Sequence length	711

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATGAAGAAGTATGTAAAATCACTTCATCCTTTCTTAATAATCTTTCCATTAACGAAGCTATTGATAGTTTGAAGTTTCTTGGAGATGTTGGTGATGCTGATTTAAATCTTCTAGACCGTATTTTGCCACATTGTACTATTAATCAATTGATGCATATAGAGAACTCTTCCAAAGGAAGGGATCTCACACCTGTGACCGACAAGTTGTGGAAAAATTTCTATGAGAAAAAGTTTGGTAAGAACGATTATGATTTTGTGATTGAGAGGATGAAACATAAGAAAGAATCATTTAAATGGAAGCAAATATATGAGGCAAAGATGGAGGAGTTCGAAAAGAAGGCAAGGAAAATTGAGGCTCGATATATACAAAACTGTCAAAAGGAAAAAGCTCAAAAAGAAAGTCGTCAAATAATATTTTGTGGGGGTTCCTCTCCAATCAATAAGAAACGAAGATTTGAAGGAAAATCAATTGAGTTTGGATGCAATGCCACCGAGAGCAAGCTTTTGAAGAAGTCGAAGAGAGAAGAACAAATTTGTGAAGTTTCATCTATGAACAATAATAAGAAGAAACAAAGTTTTGGAGGAACAACCAAACCTAGACATAATACTAAGCCAACCAAGATATGGAAGAAAGCAAAGAGAGAAGCGTTGCAATGTATAGAGACAAAGAACCTAATAGCTTTTCGAAGAAATGCGATGCAAAAGTAG

mRNA sequence

ATGTATGAAGAAGTATGTAAAATCACTTCATCCTTTCTTAATAATCTTTCCATTAACGAAGCTATTGATAGTTTGAAGTTTCTTGGAGATGTTGGTGATGCTGATTTAAATCTTCTAGACCGTATTTTGCCACATTGTACTATTAATCAATTGATGCATATAGAGAACTCTTCCAAAGGAAGGGATCTCACACCTGTGACCGACAAGTTGTGGAAAAATTTCTATGAGAAAAAGTTTGGTAAGAACGATTATGATTTTGTGATTGAGAGGATGAAACATAAGAAAGAATCATTTAAATGGAAGCAAATATATGAGGCAAAGATGGAGGAGTTCGAAAAGAAGGCAAGGAAAATTGAGGCTCGATATATACAAAACTGTCAAAAGGAAAAAGCTCAAAAAGAAAGTCGTCAAATAATATTTTGTGGGGGTTCCTCTCCAATCAATAAGAAACGAAGATTTGAAGGAAAATCAATTGAGTTTGGATGCAATGCCACCGAGAGCAAGCTTTTGAAGAAGTCGAAGAGAGAAGAACAAATTTGTGAAGTTTCATCTATGAACAATAATAAGAAGAAACAAAGTTTTGGAGGAACAACCAAACCTAGACATAATACTAAGCCAACCAAGATATGGAAGAAAGCAAAGAGAGAAGCGTTGCAATGTATAGAGACAAAGAACCTAATAGCTTTTCGAAGAAATGCGATGCAAAAGTAG

Coding sequence (CDS)

ATGTATGAAGAAGTATGTAAAATCACTTCATCCTTTCTTAATAATCTTTCCATTAACGAAGCTATTGATAGTTTGAAGTTTCTTGGAGATGTTGGTGATGCTGATTTAAATCTTCTAGACCGTATTTTGCCACATTGTACTATTAATCAATTGATGCATATAGAGAACTCTTCCAAAGGAAGGGATCTCACACCTGTGACCGACAAGTTGTGGAAAAATTTCTATGAGAAAAAGTTTGGTAAGAACGATTATGATTTTGTGATTGAGAGGATGAAACATAAGAAAGAATCATTTAAATGGAAGCAAATATATGAGGCAAAGATGGAGGAGTTCGAAAAGAAGGCAAGGAAAATTGAGGCTCGATATATACAAAACTGTCAAAAGGAAAAAGCTCAAAAAGAAAGTCGTCAAATAATATTTTGTGGGGGTTCCTCTCCAATCAATAAGAAACGAAGATTTGAAGGAAAATCAATTGAGTTTGGATGCAATGCCACCGAGAGCAAGCTTTTGAAGAAGTCGAAGAGAGAAGAACAAATTTGTGAAGTTTCATCTATGAACAATAATAAGAAGAAACAAAGTTTTGGAGGAACAACCAAACCTAGACATAATACTAAGCCAACCAAGATATGGAAGAAAGCAAAGAGAGAAGCGTTGCAATGTATAGAGACAAAGAACCTAATAGCTTTTCGAAGAAATGCGATGCAAAAGTAG

Protein sequence

MYEEVCKITSSFLNNLSINEAIDSLKFLGDVGDADLNLLDRILPHCTINQLMHIENSSKGRDLTPVTDKLWKNFYEKKFGKNDYDFVIERMKHKKESFKWKQIYEAKMEEFEKKARKIEARYIQNCQKEKAQKESRQIIFCGGSSPINKKRRFEGKSIEFGCNATESKLLKKSKREEQICEVSSMNNNKKKQSFGGTTKPRHNTKPTKIWKKAKREALQCIETKNLIAFRRNAMQK

Homology

[Close]

BLAST of ClCG05G006090.1 vs. TrEMBL
Match: A0A0A0KJR8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G511010 PE=4 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 7.7e-48
Identity = 98/176 (55.68%), Postives = 130/176 (73.86%), Query Frame = 1


Query: 15  NLSINEAIDSLKFLGDVGDADLNLLDRILPHCTINQLMHIENSSKGRDLTPVTDKLWKNF 74
           N  +N+AIDS+KFLGDVGD DL  L+ IL HCT +QL+HIEN SKGRDLTP+T+KLWKNF
Sbjct: 12  NSDVNKAIDSVKFLGDVGDTDLRSLESILSHCTADQLLHIENCSKGRDLTPITNKLWKNF 71

Query: 75  YEKKFGKNDYDFVIERMKHKKESFKWKQIYEAKMEEFEKKARKIEARYIQNCQKEKAQKE 134
           YE+KFGK+D D V+     K E+FKW  +Y AKM+E E +A+KIE R IQ+ QKEKA+K+
Sbjct: 72  YERKFGKDDVDIVV-----KNETFKWMDLYVAKMKELENRAKKIEDRIIQSYQKEKARKQ 131

Query: 135 SRQIIFCGG-SSPINKKRRFEGKSIEFGCNATESKLLKKSKREEQICEVSSMNNNK 190
           SRQI+FCG   S ++ K     +++ F  N T+S  LKK+KRE  + +VS+ +N +
Sbjct: 132 SRQIVFCGSEDSLLSNKNPKSNRTVGFKSNTTKSVTLKKAKRELHVPKVSTSSNKE 182

[Close]

BLAST of ClCG05G006090.1 vs. TrEMBL
Match: A0A061DJY1_THECC (Nucleus, subunit A, putative isoform 2 OS=Theobroma cacao GN=TCM_001808 PE=4 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 1.3e-39
Identity = 84/190 (44.21%), Postives = 129/190 (67.89%), Query Frame = 1


Query: 13  LNNLSINEAIDSLKFLGDVGDADLNLLDRILPHCTINQLMHIENSSKGRDLTPVTDKLWK 72
           L +L I  AID++++LGDVG+ D +LL+RILPHCT++QL+H+E S+KGRDL+PVTDKLWK
Sbjct: 22  LVDLCIRTAIDNVRYLGDVGETDSHLLERILPHCTMDQLIHVEKSTKGRDLSPVTDKLWK 81

Query: 73  NFYEKKFGKNDYDFVIERMKHKKESFKWKQIYEAKMEEFEKKARKIEARYIQNCQKEKAQ 132
           NFYE +FG+   + VIERMK KK SF+W+Q+YEAK+++ ++   K   R  Q  +KE A+
Sbjct: 82  NFYELQFGRASTNLVIERMKLKKVSFRWRQLYEAKLKDVQEAENKAIDRLKQLYKKEDAR 141

Query: 133 KESRQIIFCGGSSPINKKRRFEGKSIEFGCNATESKLLKKSK----REEQICEVSSMNNN 192
           K+SRQ+  C    P +K+  F G    +  +  +S ++KK+K    + +++  +++M   
Sbjct: 142 KQSRQVQLCTKVPPSSKRSFFAGSGPGYNLSYVKSNIMKKAKIDLMKSQEVKNLAAMKKK 201

Query: 193 KKKQSFGGTT 199
             +    GTT
Sbjct: 202 AVQTHHRGTT 211

[Close]

BLAST of ClCG05G006090.1 vs. TrEMBL
Match: A0A061DJY1_THECC (Nucleus, subunit A, putative isoform 2 OS=Theobroma cacao GN=TCM_001808 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 4.8e-18
Identity = 71/227 (31.28%), Postives = 112/227 (49.34%), Query Frame = 1


Query: 13  LNNLSINEAIDSLKFLGDVGDADLNLLDRILPHCTINQLMHIENSSKGRDLTPVTDKLWK 72
           L +L I  AID++++LGDVG+ D +LL+RILPHCT++QL+H+E S+KGRDL+PVTDKLWK
Sbjct: 22  LVDLCIRTAIDNVRYLGDVGETDSHLLERILPHCTMDQLIHVEKSTKGRDLSPVTDKLWK 81

Query: 73  NFYEKKFGKNDYDFVIERMKHKK--ESFKWKQIYEAKMEEFEKKARKIEARYIQNCQKEK 132
                    N Y+    R       E  K K++     + +E K + ++           
Sbjct: 82  ---------NFYELQFGRASTNLVIERMKLKKVSFRWRQLYEAKLKDVQEA--------- 141

Query: 133 AQKESRQIIFCGGSSPINKKRRFEGKSIEFGCNATESKLLKKSKREEQICEVSSMNNNKK 192
                                  E K+I+      + +  +K  R+ Q+C     ++   
Sbjct: 142 -----------------------ENKAIDRLKQLYKKEDARKQSRQVQLCTKVPPSS--- 201

Query: 193 KQSFGGTTKPRHNTK--PTKIWKKAKREALQCIETKNLIAFRRNAMQ 236
           K+SF   + P +N     + I KKAK + ++  E KNL A ++ A+Q
Sbjct: 202 KRSFFAGSGPGYNLSYVKSNIMKKAKIDLMKSQEVKNLAAMKKKAVQ 204

HSP 2 Score: 169.5 bits (428), Expect = 5.0e-39
Identity = 81/190 (42.63%), Postives = 126/190 (66.32%), Query Frame = 1


Query: 13  LNNLSINEAIDSLKFLGDVGDADLNLLDRILPHCTINQLMHIENSSKGRDLTPVTDKLWK 72
           L +L +   ID++++LGDVG+ D +LL+RILPHCT++QL+H+E S+KGRDL+ VTDKLWK
Sbjct: 22  LVDLCVRTVIDNVRYLGDVGETDSHLLERILPHCTVDQLLHVETSTKGRDLSSVTDKLWK 81

Query: 73  NFYEKKFGKNDYDFVIERMKHKKESFKWKQIYEAKMEEFEKKARKIEARYIQNCQKEKAQ 132
           NFYE +FG+     VIERMK KK SF+W+Q+YEAK+++ ++   K   R  Q  +KE A+
Sbjct: 82  NFYELQFGRESMQIVIERMKLKKVSFRWRQLYEAKLKDVQEAENKAIDRLKQLYKKEDAR 141

Query: 133 KESRQIIFCGGSSPINKKRRFEGKSIEFGCNATESKLLKKSK----REEQICEVSSMNNN 192
           K+SRQ+  C    P +K+  F G    +  +  +S ++KK+K    + +++  +++M   
Sbjct: 142 KQSRQVQLCTKVPPSSKRSFFAGSGPGYNMSNVKSNIMKKAKIDLMKSQEVKNLAAMKKK 201

Query: 193 KKKQSFGGTT 199
             +    GTT
Sbjct: 202 AVQSHHSGTT 211

[Close]

BLAST of ClCG05G006090.1 vs. TrEMBL
Match: A0A0D2RUW6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G004800 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 1.4e-20
Identity = 72/225 (32.00%), Postives = 114/225 (50.67%), Query Frame = 1


Query: 13  LNNLSINEAIDSLKFLGDVGDADLNLLDRILPHCTINQLMHIENSSKGRDLTPVTDKLWK 72
           L +L +   ID++++LGDVG+ D +LL+RILPHCT++QL+H+E S+KGRDL+ VTDKLWK
Sbjct: 22  LVDLCVRTVIDNVRYLGDVGETDSHLLERILPHCTVDQLLHVETSTKGRDLSSVTDKLWK 81

Query: 73  NFYEKKFGKNDYDFVIERMKHKKESFKWKQIYEAKMEEFEKKARKIEARYIQNCQKEKAQ 132
           NFYE         F  E M+   E  K K++     + +E K + ++             
Sbjct: 82  NFYE-------LQFGRESMQIVIERMKLKKVSFRWRQLYEAKLKDVQEA----------- 141

Query: 133 KESRQIIFCGGSSPINKKRRFEGKSIEFGCNATESKLLKKSKREEQICEVSSMNNNKKKQ 192
                                E K+I+      + +  +K  R+ Q+C     ++   K+
Sbjct: 142 ---------------------ENKAIDRLKQLYKKEDARKQSRQVQLCTKVPPSS---KR 201

Query: 193 SFGGTTKPRHNTK--PTKIWKKAKREALQCIETKNLIAFRRNAMQ 236
           SF   + P +N     + I KKAK + ++  E KNL A ++ A+Q
Sbjct: 202 SFFAGSGPGYNMSNVKSNIMKKAKIDLMKSQEVKNLAAMKKKAVQ 204

HSP 2 Score: 169.1 bits (427), Expect = 6.5e-39
Identity = 86/195 (44.10%), Postives = 129/195 (66.15%), Query Frame = 1


Query: 13  LNNLSINEAIDSLKFLGDVGDADLNLLDRILPHCTINQLMHIENSSKGRDLTPVTDKLWK 72
           L +L ++ A++++K+LGDVG+ DL+LLDRILPHCT++QLMHIE S+ GRDL+ VTDKLWK
Sbjct: 11  LVDLCVSLAVENVKYLGDVGETDLHLLDRILPHCTLDQLMHIEKSTVGRDLSSVTDKLWK 70

Query: 73  NFYEKKFGKNDYDFVIERMKHKKESFKWKQIYEAKMEEFEKKARKIEARYIQNCQKEKAQ 132
            FYEK+FG+   D VI+RM+ KK SF+W Q+YEAK+++  +   K+ AR  Q  +KE  +
Sbjct: 71  TFYEKQFGERSTDLVIQRMRQKKVSFRWLQLYEAKLKDIAEAENKLAARIRQLYKKEDDR 130

Query: 133 KESRQIIFCGGSSPINKKRRF-EGKSIEFGCNATESKLLKKSK----REEQICEVSSMNN 192
           K+SRQ+  C    P + KR F  G    +  +  +S L+KK+K    +  ++  +++M  
Sbjct: 131 KQSRQVRLCSKVPPSSNKRSFCGGSGPGYNLSNGKSNLMKKAKMDFLKSREVQNIAAMKK 190

Query: 193 N--KKKQSFGGTTKP 201
           N  ++  S     KP
Sbjct: 191 NALQRNSSSSSMMKP 205

[Close]

BLAST of ClCG05G006090.1 vs. TrEMBL
Match: A0A0B0MEQ4_GOSAR (Elongin-A OS=Gossypium arboreum GN=F383_13223 PE=4 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 8.5e-39
Identity = 81/190 (42.63%), Postives = 126/190 (66.32%), Query Frame = 1


Query: 13  LNNLSINEAIDSLKFLGDVGDADLNLLDRILPHCTINQLMHIENSSKGRDLTPVTDKLWK 72
           L +L +   ID++++LGDVG+ D +LL+RILPHCT++QL+H+E S+KGRDL+ VTDKLWK
Sbjct: 22  LVDLCVRTVIDNVRYLGDVGETDSHLLERILPHCTVDQLLHVEKSTKGRDLSSVTDKLWK 81

Query: 73  NFYEKKFGKNDYDFVIERMKHKKESFKWKQIYEAKMEEFEKKARKIEARYIQNCQKEKAQ 132
           NFYE +FG+     VIERMK KK SF+W+Q+YEAK+++ ++   K   R  Q  +KE A+
Sbjct: 82  NFYELQFGRESMKIVIERMKLKKVSFRWRQLYEAKLKDVQEAENKAIDRLKQLYKKEDAR 141

Query: 133 KESRQIIFCGGSSPINKKRRFEGKSIEFGCNATESKLLKKSK----REEQICEVSSMNNN 192
           K+SRQ+  C    P +K+  F G    +  +  +S ++KK+K    + +++  +++M   
Sbjct: 142 KQSRQVQLCTKVPPSSKRSFFAGSGPGYNMSNVKSNIMKKAKIDLMKSQEVKNLAAMKKK 201

Query: 193 KKKQSFGGTT 199
             +    GTT
Sbjct: 202 AVQSYHSGTT 211

[Close]

BLAST of ClCG05G006090.1 vs. TAIR10
Match: AT2G42780.1 (AT2G42780.1 FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 128.6 bits (322), Expect = 4.9e-30
Identity = 68/204 (33.33%), Postives = 121/204 (59.31%), Query Frame = 1


Query: 1   MYEEVCKITSSFLNNLSINEAIDSLKFLGDVGDADLNLLDRILPHCTINQLMHIENSSKG 60
           ++E + K   S ++ L + +AID++K++G VG  D  LL++IL HCT+ QL HIE+++  
Sbjct: 2   LFERLTKKPPSLVD-LCVRKAIDNVKYIGYVGGVDFQLLEQILQHCTLEQLKHIEDATDD 61

Query: 61  RDLTPVTDKLWKNFYEKKFGKNDYDFVIERMK-HKKESFKWKQIYEAKMEEFEKKARKIE 120
            DL+P+TDK WK FY+K +G+ D   +IE ++ +K   FKW+ +YE K+   ++K +++ 
Sbjct: 62  TDLSPITDKFWKGFYKKHYGEEDMKDLIEDLEWNKVNDFKWRNLYELKVIAVQQKEKELG 121

Query: 121 ARYIQNCQKEKAQKESRQIIFCGGSSPINKKRRFEGKSIE-FGCNATESKLLKKSK---- 180
            R  +  + E  +K+SRQ   C  + P   KR F G S   +     +S ++KK+K    
Sbjct: 122 GRLKERYKDENERKQSRQTKVCSKAPP--SKRPFWGNSASGYNLGHVKSNIMKKAKIDLL 181

Query: 181 REEQICEVSSMNNNKKKQSFGGTT 199
           + +++  ++++  N  ++SF  +T
Sbjct: 182 KSQEVKNLTAIKRNTIQKSFSIST 202

HSP 2 Score: 104.8 bits (260), Expect = 7.6e-23
Identity = 76/238 (31.93%), Postives = 119/238 (50.00%), Query Frame = 1


Query: 1   MYEEVCKITSSFLNNLSINEAIDSLKFLGDVGDADLNLLDRILPHCTINQLMHIENSSKG 60
           ++E + K   S ++ L + +AID++K++G VG  D  LL++IL HCT+ QL HIE+++  
Sbjct: 2   LFERLTKKPPSLVD-LCVRKAIDNVKYIGYVGGVDFQLLEQILQHCTLEQLKHIEDATDD 61

Query: 61  RDLTPVTDKLWKNFYEKKFGKNDYDFVIERMKHKKESFKWKQIYEAKMEEFEKKARKIEA 120
            DL+P+TDK WK FY+K +G+ D       MK   E  +W      K+ +F K     E 
Sbjct: 62  TDLSPITDKFWKGFYKKHYGEED-------MKDLIEDLEWN-----KVNDF-KWRNLYEL 121

Query: 121 RYIQNCQKEKAQKESRQIIFCGGSSPINKKRRFEGKSIEFGCNATESKLLKKSKREEQIC 180
           + I   QKEK           GG      K R++ ++             +K  R+ ++C
Sbjct: 122 KVIAVQQKEKE---------LGG----RLKERYKDENE------------RKQSRQTKVC 181

Query: 181 EVSSMNNNKKKQSFGGTTKPRHNTK--PTKIWKKAKREALQCIETKNLIAFRRNAMQK 237
             +  +    K+ F G +   +N     + I KKAK + L+  E KNL A +RN +QK
Sbjct: 182 SKAPPS----KRPFWGNSASGYNLGHVKSNIMKKAKIDLLKSQEVKNLTAIKRNTIQK 196

[Close]

BLAST of ClCG05G006090.1 vs. NCBI nr
Match: gi|700193830|gb|KGN49034.1| (hypothetical protein Csa_6G511010 [Cucumis sativus])

HSP 1 Score: 198.7 bits (504), Expect = 1.1e-47
Identity = 98/176 (55.68%), Postives = 130/176 (73.86%), Query Frame = 1


Query: 15  NLSINEAIDSLKFLGDVGDADLNLLDRILPHCTINQLMHIENSSKGRDLTPVTDKLWKNF 74
           N  +N+AIDS+KFLGDVGD DL  L+ IL HCT +QL+HIEN SKGRDLTP+T+KLWKNF
Sbjct: 12  NSDVNKAIDSVKFLGDVGDTDLRSLESILSHCTADQLLHIENCSKGRDLTPITNKLWKNF 71

Query: 75  YEKKFGKNDYDFVIERMKHKKESFKWKQIYEAKMEEFEKKARKIEARYIQNCQKEKAQKE 134
           YE+KFGK+D D V+     K E+FKW  +Y AKM+E E +A+KIE R IQ+ QKEKA+K+
Sbjct: 72  YERKFGKDDVDIVV-----KNETFKWMDLYVAKMKELENRAKKIEDRIIQSYQKEKARKQ 131

Query: 135 SRQIIFCGG-SSPINKKRRFEGKSIEFGCNATESKLLKKSKREEQICEVSSMNNNK 190
           SRQI+FCG   S ++ K     +++ F  N T+S  LKK+KRE  + +VS+ +N +
Sbjct: 132 SRQIVFCGSEDSLLSNKNPKSNRTVGFKSNTTKSVTLKKAKRELHVPKVSTSSNKE 182

[Close]

BLAST of ClCG05G006090.1 vs. NCBI nr
Match: gi|449450878|ref|XP_004143189.1| (PREDICTED: transcription elongation factor B polypeptide 3 [Cucumis sativus])

HSP 1 Score: 191.4 bits (485), Expect = 1.8e-45
Identity = 96/194 (49.48%), Postives = 131/194 (67.53%), Query Frame = 1


Query: 13  LNNLSINEAIDSLKFLGDVGDADLNLLDRILPHCTINQLMHIENSSKGRDLTPVTDKLWK 72
           L +L +N+AID+L+FLGDVG+ D++LLDRILPHCT++QLMH+E SS+GRDLTPVTDKLWK
Sbjct: 10  LVDLCVNKAIDNLRFLGDVGETDIHLLDRILPHCTVDQLMHVEKSSEGRDLTPVTDKLWK 69

Query: 73  NFYEKKFGKNDYDFVIERMKHKKESFKWKQIYEAKMEEFEKKARKIEARYIQNCQKEKAQ 132
            FYE++FGK     VIERM+ K+ +F+W Q+YEAKME+ EK   K   R  Q+  KE A+
Sbjct: 70  KFYERQFGKESTTTVIERMRQKRVAFRWIQLYEAKMEDIEKNESKAADRIKQSYLKENAR 129

Query: 133 KESRQIIFCGGSSPINKKRRFEGKSIEFGCNATESKLLKKSKRE----EQICEVSSMNNN 192
           K+SRQI  C    P + KR F G    +    T++K+LKK+K E    +++  + +   N
Sbjct: 130 KQSRQIQICSKVPPSSNKRSFGGSGYGYNVANTKNKILKKAKIEVLQSQEMKNIKAWRRN 189

Query: 193 --KKKQSFGGTTKP 201
             +K      T KP
Sbjct: 190 AVQKSSDISSTKKP 203

[Close]

BLAST of ClCG05G006090.1 vs. NCBI nr
Match: gi|449450878|ref|XP_004143189.1| (PREDICTED: transcription elongation factor B polypeptide 3 [Cucumis sativus])

HSP 1 Score: 148.7 bits (374), Expect = 1.3e-32
Identity = 94/226 (41.59%), Postives = 129/226 (57.08%), Query Frame = 1


Query: 13  LNNLSINEAIDSLKFLGDVGDADLNLLDRILPHCTINQLMHIENSSKGRDLTPVTDKLWK 72
           L +L +N+AID+L+FLGDVG+ D++LLDRILPHCT++QLMH+E SS+GRDLTPVTDKLWK
Sbjct: 10  LVDLCVNKAIDNLRFLGDVGETDIHLLDRILPHCTVDQLMHVEKSSEGRDLTPVTDKLWK 69

Query: 73  NFYEKKFGKNDYDFVIERMKHKKESFKWKQIYEAKMEEFEKKARKIEARYIQNCQKEKAQ 132
            FYE++FGK     VIERM+                       +++  R+IQ  + +   
Sbjct: 70  KFYERQFGKESTTTVIERMRQ----------------------KRVAFRWIQLYEAKMED 129

Query: 133 KESRQIIFCGGSSPINKKRRFEGKSIEFGCNATESKLLKKSKREEQICEVSSMNNNKKKQ 192
            E                   E K+ +    +   +  +K  R+ QIC     ++NK+  
Sbjct: 130 IEKN-----------------ESKAADRIKQSYLKENARKQSRQIQICSKVPPSSNKR-- 189

Query: 193 SFGGTTKPRH--NTKPTKIWKKAKREALQCIETKNLIAFRRNAMQK 237
           SFGG+    +  NTK  KI KKAK E LQ  E KN+ A+RRNA+QK
Sbjct: 190 SFGGSGYGYNVANTK-NKILKKAKIEVLQSQEMKNIKAWRRNAVQK 193

HSP 2 Score: 187.2 bits (474), Expect = 3.3e-44
Identity = 93/194 (47.94%), Postives = 131/194 (67.53%), Query Frame = 1


Query: 13  LNNLSINEAIDSLKFLGDVGDADLNLLDRILPHCTINQLMHIENSSKGRDLTPVTDKLWK 72
           L +L +N+AID+++FLGDVG+ D++LL+RILPHCT++QLMH+E SS+GRDLTPVTDKLWK
Sbjct: 10  LVDLCVNKAIDNIRFLGDVGETDIHLLERILPHCTVDQLMHVEKSSEGRDLTPVTDKLWK 69

Query: 73  NFYEKKFGKNDYDFVIERMKHKKESFKWKQIYEAKMEEFEKKARKIEARYIQNCQKEKAQ 132
            FYE++FGK     VIERM+ K+ +F+W Q+YEAKM++ EK   K   R  Q+  KE A+
Sbjct: 70  KFYERQFGKESTTTVIERMRQKRVAFRWIQLYEAKMQDIEKNESKAADRIKQSYLKENAR 129

Query: 133 KESRQIIFCGGSSPINKKRRFEGKSIEFGCNATESKLLKKSKRE----EQICEVSSMNNN 192
           K+SRQI  C    P + KR F G    +    T++K+LKK+K E    +++  + +   N
Sbjct: 130 KQSRQIQICSKVPPSSNKRSFGGSGYGYNVANTKNKILKKAKIEVLQSQEMKNIKAWRRN 189

Query: 193 --KKKQSFGGTTKP 201
             +K      T KP
Sbjct: 190 AVQKSSDIPSTKKP 203

[Close]

BLAST of ClCG05G006090.1 vs. NCBI nr
Match: gi|659112953|ref|XP_008456387.1| (PREDICTED: uncharacterized protein LOC103496337 [Cucumis melo])

HSP 1 Score: 146.4 bits (368), Expect = 6.5e-32
Identity = 92/226 (40.71%), Postives = 129/226 (57.08%), Query Frame = 1


Query: 13  LNNLSINEAIDSLKFLGDVGDADLNLLDRILPHCTINQLMHIENSSKGRDLTPVTDKLWK 72
           L +L +N+AID+++FLGDVG+ D++LL+RILPHCT++QLMH+E SS+GRDLTPVTDKLWK
Sbjct: 10  LVDLCVNKAIDNIRFLGDVGETDIHLLERILPHCTVDQLMHVEKSSEGRDLTPVTDKLWK 69

Query: 73  NFYEKKFGKNDYDFVIERMKHKKESFKWKQIYEAKMEEFEKKARKIEARYIQNCQKEKAQ 132
            FYE++FGK     VIERM+                       +++  R+IQ  + +   
Sbjct: 70  KFYERQFGKESTTTVIERMRQ----------------------KRVAFRWIQLYEAKMQD 129

Query: 133 KESRQIIFCGGSSPINKKRRFEGKSIEFGCNATESKLLKKSKREEQICEVSSMNNNKKKQ 192
            E                   E K+ +    +   +  +K  R+ QIC     ++NK+  
Sbjct: 130 IEKN-----------------ESKAADRIKQSYLKENARKQSRQIQICSKVPPSSNKR-- 189

Query: 193 SFGGTTKPRH--NTKPTKIWKKAKREALQCIETKNLIAFRRNAMQK 237
           SFGG+    +  NTK  KI KKAK E LQ  E KN+ A+RRNA+QK
Sbjct: 190 SFGGSGYGYNVANTK-NKILKKAKIEVLQSQEMKNIKAWRRNAVQK 193

HSP 2 Score: 171.4 bits (433), Expect = 1.9e-39
Identity = 84/190 (44.21%), Postives = 129/190 (67.89%), Query Frame = 1


Query: 13  LNNLSINEAIDSLKFLGDVGDADLNLLDRILPHCTINQLMHIENSSKGRDLTPVTDKLWK 72
           L +L I  AID++++LGDVG+ D +LL+RILPHCT++QL+H+E S+KGRDL+PVTDKLWK
Sbjct: 22  LVDLCIRTAIDNVRYLGDVGETDSHLLERILPHCTMDQLIHVEKSTKGRDLSPVTDKLWK 81

Query: 73  NFYEKKFGKNDYDFVIERMKHKKESFKWKQIYEAKMEEFEKKARKIEARYIQNCQKEKAQ 132
           NFYE +FG+   + VIERMK KK SF+W+Q+YEAK+++ ++   K   R  Q  +KE A+
Sbjct: 82  NFYELQFGRASTNLVIERMKLKKVSFRWRQLYEAKLKDVQEAENKAIDRLKQLYKKEDAR 141

Query: 133 KESRQIIFCGGSSPINKKRRFEGKSIEFGCNATESKLLKKSK----REEQICEVSSMNNN 192
           K+SRQ+  C    P +K+  F G    +  +  +S ++KK+K    + +++  +++M   
Sbjct: 142 KQSRQVQLCTKVPPSSKRSFFAGSGPGYNLSYVKSNIMKKAKIDLMKSQEVKNLAAMKKK 201

Query: 193 KKKQSFGGTT 199
             +    GTT
Sbjct: 202 AVQTHHRGTT 211

[Close]

BLAST of ClCG05G006090.1 vs. NCBI nr
Match: gi|590710292|ref|XP_007048788.1| (Nucleus, subunit A, putative isoform 2 [Theobroma cacao])

HSP 1 Score: 99.8 bits (247), Expect = 7.0e-18
Identity = 71/227 (31.28%), Postives = 112/227 (49.34%), Query Frame = 1


Query: 13  LNNLSINEAIDSLKFLGDVGDADLNLLDRILPHCTINQLMHIENSSKGRDLTPVTDKLWK 72
           L +L I  AID++++LGDVG+ D +LL+RILPHCT++QL+H+E S+KGRDL+PVTDKLWK
Sbjct: 22  LVDLCIRTAIDNVRYLGDVGETDSHLLERILPHCTMDQLIHVEKSTKGRDLSPVTDKLWK 81

Query: 73  NFYEKKFGKNDYDFVIERMKHKK--ESFKWKQIYEAKMEEFEKKARKIEARYIQNCQKEK 132
                    N Y+    R       E  K K++     + +E K + ++           
Sbjct: 82  ---------NFYELQFGRASTNLVIERMKLKKVSFRWRQLYEAKLKDVQEA--------- 141

Query: 133 AQKESRQIIFCGGSSPINKKRRFEGKSIEFGCNATESKLLKKSKREEQICEVSSMNNNKK 192
                                  E K+I+      + +  +K  R+ Q+C     ++   
Sbjct: 142 -----------------------ENKAIDRLKQLYKKEDARKQSRQVQLCTKVPPSS--- 201

Query: 193 KQSFGGTTKPRHNTK--PTKIWKKAKREALQCIETKNLIAFRRNAMQ 236
           K+SF   + P +N     + I KKAK + ++  E KNL A ++ A+Q
Sbjct: 202 KRSFFAGSGPGYNLSYVKSNIMKKAKIDLMKSQEVKNLAAMKKKAVQ 204

HSP 2 Score: 170.6 bits (431), Expect = 3.2e-39
Identity = 89/198 (44.95%), Postives = 130/198 (65.66%), Query Frame = 1


Query: 13  LNNLSINEAIDSLKFLGDVGDADLNLLDRILPHCTINQLMHIENSSKGRDLTPVTDKLWK 72
           L +L +  AID++++LGDVG+ D +LLDRIL HCT++QL HIEN ++GRDL+PVTDKLWK
Sbjct: 8   LVDLCVQLAIDNVRYLGDVGETDFHLLDRILSHCTLDQLTHIENKTEGRDLSPVTDKLWK 67

Query: 73  NFYEKKFGKNDYDFVIERMKHKKESFKWKQIYEAKMEEFEKKARKIEARYIQNCQKEKAQ 132
            FY+ +FG +  + V+ERM+ +K +FKW+Q+YEAK++E E+  +K   R  Q  Q+E A+
Sbjct: 68  KFYKLQFGVDSTNTVVERMRQRKVTFKWRQLYEAKVKEREEATQKSLDRIKQRYQEEDAR 127

Query: 133 KESRQIIFCGGSSPINKKRRFEGKSIEFGCNATESKLLKKSKRE----EQICEVSSMNNN 192
           K+SRQ+  C    P +KKR F G         T+S LLKK+K E     ++  +++M N 
Sbjct: 128 KQSRQVQLCSKVPPPSKKRSFYGGVAASNIYNTKSGLLKKAKLEFINSREVKNIAAMKNK 187

Query: 193 --KKKQSFGGTTKPRHNT 205
              +  S   T KP  N+
Sbjct: 188 VVHRNHSVSSTRKPIVNS 205

The following BLAST results are available for this feature:

BLAST of ClCG05G006090.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KJR8_CUCSA	7.7e-48	55.68	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G511010 PE=4 SV=1	[more]
A0A061DJY1_THECC	1.3e-39	44.21	Nucleus, subunit A, putative isoform 2 OS=Theobroma cacao GN=TCM_001808 PE=4 SV=...	[more]
A0A061DJY1_THECC	4.8e-18	31.28	Nucleus, subunit A, putative isoform 2 OS=Theobroma cacao GN=TCM_001808 PE=4 SV=...	[more]
A0A0D2RUW6_GOSRA	1.4e-20	32.00	Uncharacterized protein OS=Gossypium raimondii GN=B456_006G004800 PE=4 SV=1	[more]
A0A0B0MEQ4_GOSAR	8.5e-39	42.63	Elongin-A OS=Gossypium arboreum GN=F383_13223 PE=4 SV=1	[more]

BLAST of ClCG05G006090.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G42780.1	4.9e-30	33.33	FUNCTIONS IN: molecular_function unknown	[more]

BLAST of ClCG05G006090.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700193830\|gb\|KGN49034.1\|	1.1e-47	55.68	hypothetical protein Csa_6G511010 [Cucumis sativus]	[more]
gi\|449450878\|ref\|XP_004143189.1\|	1.8e-45	49.48	PREDICTED: transcription elongation factor B polypeptide 3 [Cucumis sativus]	[more]
gi\|449450878\|ref\|XP_004143189.1\|	1.3e-32	41.59	PREDICTED: transcription elongation factor B polypeptide 3 [Cucumis sativus]	[more]
gi\|659112953\|ref\|XP_008456387.1\|	6.5e-32	40.71	PREDICTED: uncharacterized protein LOC103496337 [Cucumis melo]	[more]
gi\|590710292\|ref\|XP_007048788.1\|	7.0e-18	31.28	Nucleus, subunit A, putative isoform 2 [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR010684	RNA_pol_II_trans_fac_SIII_A

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus
GO:0016021	integral component of membrane

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
ClCG05G006090	ClCG05G006090	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
ClCG05G006090.1	ClCG05G006090.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG05G006090.1.cds1	ClCG05G006090.1.cds1	CDS

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010684	RNA polymerase II transcription factor SIII, subunit A	PFAM	PF06881	Elongin_A	coord: 29..138 score: 2.5
None	No IPR available	unknown	Coil	Coil	coord: 101..121 scor
None	No IPR available	PANTHER	PTHR15141	TRANSCRIPTION ELONGATION FACTOR B POLYPEPTIDE 3	coord: 13..205 score: 2.1
None	No IPR available	PANTHER	PTHR15141:SF53	PROTEIN T23E1.3, ISOFORM A	coord: 13..205 score: 2.1