ClCG05G006090 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG05G006090
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Transcription elongation factor B polypeptide 3
Location	CG_Chr05 : 6051278 .. 6051988 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATGAAGAAGTATGTAAAATCACTTCATCCTTTCTTAATAATCTTTCCATTAACGAAGCTATTGATAGTTTGAAGTTTCTTGGAGATGTTGGTGATGCTGATTTAAATCTTCTAGACCGTATTTTGCCACATTGTACTATTAATCAATTGATGCATATAGAGAACTCTTCCAAAGGAAGGGATCTCACACCTGTGACCGACAAGTTGTGGAAAAATTTCTATGAGAAAAAGTTTGGTAAGAACGATTATGATTTTGTGATTGAGAGGATGAAACATAAGAAAGAATCATTTAAATGGAAGCAAATATATGAGGCAAAGATGGAGGAGTTCGAAAAGAAGGCAAGGAAAATTGAGGCTCGATATATACAAAACTGTCAAAAGGAAAAAGCTCAAAAAGAAAGTCGTCAAATAATATTTTGTGGGGGTTCCTCTCCAATCAATAAGAAACGAAGATTTGAAGGAAAATCAATTGAGTTTGGATGCAATGCCACCGAGAGCAAGCTTTTGAAGAAGTCGAAGAGAGAAGAACAAATTTGTGAAGTTTCATCTATGAACAATAATAAGAAGAAACAAAGTTTTGGAGGAACAACCAAACCTAGACATAATACTAAGCCAACCAAGATATGGAAGAAAGCAAAGAGAGAAGCGTTGCAATGTATAGAGACAAAGAACCTAATAGCTTTTCGAAGAAATGCGATGCAAAAGTAG

mRNA sequence

ATGTATGAAGAAGTATGTAAAATCACTTCATCCTTTCTTAATAATCTTTCCATTAACGAAGCTATTGATAGTTTGAAGTTTCTTGGAGATGTTGGTGATGCTGATTTAAATCTTCTAGACCGTATTTTGCCACATTGTACTATTAATCAATTGATGCATATAGAGAACTCTTCCAAAGGAAGGGATCTCACACCTGTGACCGACAAGTTGTGGAAAAATTTCTATGAGAAAAAGTTTGGTAAGAACGATTATGATTTTGTGATTGAGAGGATGAAACATAAGAAAGAATCATTTAAATGGAAGCAAATATATGAGGCAAAGATGGAGGAGTTCGAAAAGAAGGCAAGGAAAATTGAGGCTCGATATATACAAAACTGTCAAAAGGAAAAAGCTCAAAAAGAAAGTCGTCAAATAATATTTTGTGGGGGTTCCTCTCCAATCAATAAGAAACGAAGATTTGAAGGAAAATCAATTGAGTTTGGATGCAATGCCACCGAGAGCAAGCTTTTGAAGAAGTCGAAGAGAGAAGAACAAATTTGTGAAGTTTCATCTATGAACAATAATAAGAAGAAACAAAGTTTTGGAGGAACAACCAAACCTAGACATAATACTAAGCCAACCAAGATATGGAAGAAAGCAAAGAGAGAAGCGTTGCAATGTATAGAGACAAAGAACCTAATAGCTTTTCGAAGAAATGCGATGCAAAAGTAG

Coding sequence (CDS)

ATGTATGAAGAAGTATGTAAAATCACTTCATCCTTTCTTAATAATCTTTCCATTAACGAAGCTATTGATAGTTTGAAGTTTCTTGGAGATGTTGGTGATGCTGATTTAAATCTTCTAGACCGTATTTTGCCACATTGTACTATTAATCAATTGATGCATATAGAGAACTCTTCCAAAGGAAGGGATCTCACACCTGTGACCGACAAGTTGTGGAAAAATTTCTATGAGAAAAAGTTTGGTAAGAACGATTATGATTTTGTGATTGAGAGGATGAAACATAAGAAAGAATCATTTAAATGGAAGCAAATATATGAGGCAAAGATGGAGGAGTTCGAAAAGAAGGCAAGGAAAATTGAGGCTCGATATATACAAAACTGTCAAAAGGAAAAAGCTCAAAAAGAAAGTCGTCAAATAATATTTTGTGGGGGTTCCTCTCCAATCAATAAGAAACGAAGATTTGAAGGAAAATCAATTGAGTTTGGATGCAATGCCACCGAGAGCAAGCTTTTGAAGAAGTCGAAGAGAGAAGAACAAATTTGTGAAGTTTCATCTATGAACAATAATAAGAAGAAACAAAGTTTTGGAGGAACAACCAAACCTAGACATAATACTAAGCCAACCAAGATATGGAAGAAAGCAAAGAGAGAAGCGTTGCAATGTATAGAGACAAAGAACCTAATAGCTTTTCGAAGAAATGCGATGCAAAAGTAG

Protein sequence

MYEEVCKITSSFLNNLSINEAIDSLKFLGDVGDADLNLLDRILPHCTINQLMHIENSSKGRDLTPVTDKLWKNFYEKKFGKNDYDFVIERMKHKKESFKWKQIYEAKMEEFEKKARKIEARYIQNCQKEKAQKESRQIIFCGGSSPINKKRRFEGKSIEFGCNATESKLLKKSKREEQICEVSSMNNNKKKQSFGGTTKPRHNTKPTKIWKKAKREALQCIETKNLIAFRRNAMQK

Homology

[Close]

BLAST of ClCG05G006090 vs. TrEMBL
Match: A0A0A0KJR8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G511010 PE=4 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 7.7e-48
Identity = 98/176 (55.68%), Postives = 130/176 (73.86%), Query Frame = 1


Query: 15  NLSINEAIDSLKFLGDVGDADLNLLDRILPHCTINQLMHIENSSKGRDLTPVTDKLWKNF 74
           N  +N+AIDS+KFLGDVGD DL  L+ IL HCT +QL+HIEN SKGRDLTP+T+KLWKNF
Sbjct: 12  NSDVNKAIDSVKFLGDVGDTDLRSLESILSHCTADQLLHIENCSKGRDLTPITNKLWKNF 71

Query: 75  YEKKFGKNDYDFVIERMKHKKESFKWKQIYEAKMEEFEKKARKIEARYIQNCQKEKAQKE 134
           YE+KFGK+D D V+     K E+FKW  +Y AKM+E E +A+KIE R IQ+ QKEKA+K+
Sbjct: 72  YERKFGKDDVDIVV-----KNETFKWMDLYVAKMKELENRAKKIEDRIIQSYQKEKARKQ 131

Query: 135 SRQIIFCGG-SSPINKKRRFEGKSIEFGCNATESKLLKKSKREEQICEVSSMNNNK 190
           SRQI+FCG   S ++ K     +++ F  N T+S  LKK+KRE  + +VS+ +N +
Sbjct: 132 SRQIVFCGSEDSLLSNKNPKSNRTVGFKSNTTKSVTLKKAKRELHVPKVSTSSNKE 182

[Close]

BLAST of ClCG05G006090 vs. TrEMBL
Match: A0A061DJY1_THECC (Nucleus, subunit A, putative isoform 2 OS=Theobroma cacao GN=TCM_001808 PE=4 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 1.3e-39
Identity = 84/190 (44.21%), Postives = 129/190 (67.89%), Query Frame = 1


Query: 13  LNNLSINEAIDSLKFLGDVGDADLNLLDRILPHCTINQLMHIENSSKGRDLTPVTDKLWK 72
           L +L I  AID++++LGDVG+ D +LL+RILPHCT++QL+H+E S+KGRDL+PVTDKLWK
Sbjct: 22  LVDLCIRTAIDNVRYLGDVGETDSHLLERILPHCTMDQLIHVEKSTKGRDLSPVTDKLWK 81

Query: 73  NFYEKKFGKNDYDFVIERMKHKKESFKWKQIYEAKMEEFEKKARKIEARYIQNCQKEKAQ 132
           NFYE +FG+   + VIERMK KK SF+W+Q+YEAK+++ ++   K   R  Q  +KE A+
Sbjct: 82  NFYELQFGRASTNLVIERMKLKKVSFRWRQLYEAKLKDVQEAENKAIDRLKQLYKKEDAR 141

Query: 133 KESRQIIFCGGSSPINKKRRFEGKSIEFGCNATESKLLKKSK----REEQICEVSSMNNN 192
           K+SRQ+  C    P +K+  F G    +  +  +S ++KK+K    + +++  +++M   
Sbjct: 142 KQSRQVQLCTKVPPSSKRSFFAGSGPGYNLSYVKSNIMKKAKIDLMKSQEVKNLAAMKKK 201

Query: 193 KKKQSFGGTT 199
             +    GTT
Sbjct: 202 AVQTHHRGTT 211

[Close]

BLAST of ClCG05G006090 vs. TrEMBL
Match: A0A061DJY1_THECC (Nucleus, subunit A, putative isoform 2 OS=Theobroma cacao GN=TCM_001808 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 4.8e-18
Identity = 71/227 (31.28%), Postives = 112/227 (49.34%), Query Frame = 1


Query: 13  LNNLSINEAIDSLKFLGDVGDADLNLLDRILPHCTINQLMHIENSSKGRDLTPVTDKLWK 72
           L +L I  AID++++LGDVG+ D +LL+RILPHCT++QL+H+E S+KGRDL+PVTDKLWK
Sbjct: 22  LVDLCIRTAIDNVRYLGDVGETDSHLLERILPHCTMDQLIHVEKSTKGRDLSPVTDKLWK 81

Query: 73  NFYEKKFGKNDYDFVIERMKHKK--ESFKWKQIYEAKMEEFEKKARKIEARYIQNCQKEK 132
                    N Y+    R       E  K K++     + +E K + ++           
Sbjct: 82  ---------NFYELQFGRASTNLVIERMKLKKVSFRWRQLYEAKLKDVQEA--------- 141

Query: 133 AQKESRQIIFCGGSSPINKKRRFEGKSIEFGCNATESKLLKKSKREEQICEVSSMNNNKK 192
                                  E K+I+      + +  +K  R+ Q+C     ++   
Sbjct: 142 -----------------------ENKAIDRLKQLYKKEDARKQSRQVQLCTKVPPSS--- 201

Query: 193 KQSFGGTTKPRHNTK--PTKIWKKAKREALQCIETKNLIAFRRNAMQ 236
           K+SF   + P +N     + I KKAK + ++  E KNL A ++ A+Q
Sbjct: 202 KRSFFAGSGPGYNLSYVKSNIMKKAKIDLMKSQEVKNLAAMKKKAVQ 204

HSP 2 Score: 169.5 bits (428), Expect = 5.0e-39
Identity = 81/190 (42.63%), Postives = 126/190 (66.32%), Query Frame = 1


Query: 13  LNNLSINEAIDSLKFLGDVGDADLNLLDRILPHCTINQLMHIENSSKGRDLTPVTDKLWK 72
           L +L +   ID++++LGDVG+ D +LL+RILPHCT++QL+H+E S+KGRDL+ VTDKLWK
Sbjct: 22  LVDLCVRTVIDNVRYLGDVGETDSHLLERILPHCTVDQLLHVETSTKGRDLSSVTDKLWK 81

Query: 73  NFYEKKFGKNDYDFVIERMKHKKESFKWKQIYEAKMEEFEKKARKIEARYIQNCQKEKAQ 132
           NFYE +FG+     VIERMK KK SF+W+Q+YEAK+++ ++   K   R  Q  +KE A+
Sbjct: 82  NFYELQFGRESMQIVIERMKLKKVSFRWRQLYEAKLKDVQEAENKAIDRLKQLYKKEDAR 141

Query: 133 KESRQIIFCGGSSPINKKRRFEGKSIEFGCNATESKLLKKSK----REEQICEVSSMNNN 192
           K+SRQ+  C    P +K+  F G    +  +  +S ++KK+K    + +++  +++M   
Sbjct: 142 KQSRQVQLCTKVPPSSKRSFFAGSGPGYNMSNVKSNIMKKAKIDLMKSQEVKNLAAMKKK 201

Query: 193 KKKQSFGGTT 199
             +    GTT
Sbjct: 202 AVQSHHSGTT 211

[Close]

BLAST of ClCG05G006090 vs. TrEMBL
Match: A0A0D2RUW6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G004800 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 1.4e-20
Identity = 72/225 (32.00%), Postives = 114/225 (50.67%), Query Frame = 1


Query: 13  LNNLSINEAIDSLKFLGDVGDADLNLLDRILPHCTINQLMHIENSSKGRDLTPVTDKLWK 72
           L +L +   ID++++LGDVG+ D +LL+RILPHCT++QL+H+E S+KGRDL+ VTDKLWK
Sbjct: 22  LVDLCVRTVIDNVRYLGDVGETDSHLLERILPHCTVDQLLHVETSTKGRDLSSVTDKLWK 81

Query: 73  NFYEKKFGKNDYDFVIERMKHKKESFKWKQIYEAKMEEFEKKARKIEARYIQNCQKEKAQ 132
           NFYE         F  E M+   E  K K++     + +E K + ++             
Sbjct: 82  NFYE-------LQFGRESMQIVIERMKLKKVSFRWRQLYEAKLKDVQEA----------- 141

Query: 133 KESRQIIFCGGSSPINKKRRFEGKSIEFGCNATESKLLKKSKREEQICEVSSMNNNKKKQ 192
                                E K+I+      + +  +K  R+ Q+C     ++   K+
Sbjct: 142 ---------------------ENKAIDRLKQLYKKEDARKQSRQVQLCTKVPPSS---KR 201

Query: 193 SFGGTTKPRHNTK--PTKIWKKAKREALQCIETKNLIAFRRNAMQ 236
           SF   + P +N     + I KKAK + ++  E KNL A ++ A+Q
Sbjct: 202 SFFAGSGPGYNMSNVKSNIMKKAKIDLMKSQEVKNLAAMKKKAVQ 204

HSP 2 Score: 169.1 bits (427), Expect = 6.5e-39
Identity = 86/195 (44.10%), Postives = 129/195 (66.15%), Query Frame = 1


Query: 13  LNNLSINEAIDSLKFLGDVGDADLNLLDRILPHCTINQLMHIENSSKGRDLTPVTDKLWK 72
           L +L ++ A++++K+LGDVG+ DL+LLDRILPHCT++QLMHIE S+ GRDL+ VTDKLWK
Sbjct: 11  LVDLCVSLAVENVKYLGDVGETDLHLLDRILPHCTLDQLMHIEKSTVGRDLSSVTDKLWK 70

Query: 73  NFYEKKFGKNDYDFVIERMKHKKESFKWKQIYEAKMEEFEKKARKIEARYIQNCQKEKAQ 132
            FYEK+FG+   D VI+RM+ KK SF+W Q+YEAK+++  +   K+ AR  Q  +KE  +
Sbjct: 71  TFYEKQFGERSTDLVIQRMRQKKVSFRWLQLYEAKLKDIAEAENKLAARIRQLYKKEDDR 130

Query: 133 KESRQIIFCGGSSPINKKRRF-EGKSIEFGCNATESKLLKKSK----REEQICEVSSMNN 192
           K+SRQ+  C    P + KR F  G    +  +  +S L+KK+K    +  ++  +++M  
Sbjct: 131 KQSRQVRLCSKVPPSSNKRSFCGGSGPGYNLSNGKSNLMKKAKMDFLKSREVQNIAAMKK 190

Query: 193 N--KKKQSFGGTTKP 201
           N  ++  S     KP
Sbjct: 191 NALQRNSSSSSMMKP 205

[Close]

BLAST of ClCG05G006090 vs. TrEMBL
Match: A0A0B0MEQ4_GOSAR (Elongin-A OS=Gossypium arboreum GN=F383_13223 PE=4 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 8.5e-39
Identity = 81/190 (42.63%), Postives = 126/190 (66.32%), Query Frame = 1


Query: 13  LNNLSINEAIDSLKFLGDVGDADLNLLDRILPHCTINQLMHIENSSKGRDLTPVTDKLWK 72
           L +L +   ID++++LGDVG+ D +LL+RILPHCT++QL+H+E S+KGRDL+ VTDKLWK
Sbjct: 22  LVDLCVRTVIDNVRYLGDVGETDSHLLERILPHCTVDQLLHVEKSTKGRDLSSVTDKLWK 81

Query: 73  NFYEKKFGKNDYDFVIERMKHKKESFKWKQIYEAKMEEFEKKARKIEARYIQNCQKEKAQ 132
           NFYE +FG+     VIERMK KK SF+W+Q+YEAK+++ ++   K   R  Q  +KE A+
Sbjct: 82  NFYELQFGRESMKIVIERMKLKKVSFRWRQLYEAKLKDVQEAENKAIDRLKQLYKKEDAR 141

Query: 133 KESRQIIFCGGSSPINKKRRFEGKSIEFGCNATESKLLKKSK----REEQICEVSSMNNN 192
           K+SRQ+  C    P +K+  F G    +  +  +S ++KK+K    + +++  +++M   
Sbjct: 142 KQSRQVQLCTKVPPSSKRSFFAGSGPGYNMSNVKSNIMKKAKIDLMKSQEVKNLAAMKKK 201

Query: 193 KKKQSFGGTT 199
             +    GTT
Sbjct: 202 AVQSYHSGTT 211

[Close]

BLAST of ClCG05G006090 vs. TAIR10
Match: AT2G42780.1 (AT2G42780.1 FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 128.6 bits (322), Expect = 4.9e-30
Identity = 68/204 (33.33%), Postives = 121/204 (59.31%), Query Frame = 1


Query: 1   MYEEVCKITSSFLNNLSINEAIDSLKFLGDVGDADLNLLDRILPHCTINQLMHIENSSKG 60
           ++E + K   S ++ L + +AID++K++G VG  D  LL++IL HCT+ QL HIE+++  
Sbjct: 2   LFERLTKKPPSLVD-LCVRKAIDNVKYIGYVGGVDFQLLEQILQHCTLEQLKHIEDATDD 61

Query: 61  RDLTPVTDKLWKNFYEKKFGKNDYDFVIERMK-HKKESFKWKQIYEAKMEEFEKKARKIE 120
            DL+P+TDK WK FY+K +G+ D   +IE ++ +K   FKW+ +YE K+   ++K +++ 
Sbjct: 62  TDLSPITDKFWKGFYKKHYGEEDMKDLIEDLEWNKVNDFKWRNLYELKVIAVQQKEKELG 121

Query: 121 ARYIQNCQKEKAQKESRQIIFCGGSSPINKKRRFEGKSIE-FGCNATESKLLKKSK---- 180
            R  +  + E  +K+SRQ   C  + P   KR F G S   +     +S ++KK+K    
Sbjct: 122 GRLKERYKDENERKQSRQTKVCSKAPP--SKRPFWGNSASGYNLGHVKSNIMKKAKIDLL 181

Query: 181 REEQICEVSSMNNNKKKQSFGGTT 199
           + +++  ++++  N  ++SF  +T
Sbjct: 182 KSQEVKNLTAIKRNTIQKSFSIST 202

HSP 2 Score: 104.8 bits (260), Expect = 7.6e-23
Identity = 76/238 (31.93%), Postives = 119/238 (50.00%), Query Frame = 1


Query: 1   MYEEVCKITSSFLNNLSINEAIDSLKFLGDVGDADLNLLDRILPHCTINQLMHIENSSKG 60
           ++E + K   S ++ L + +AID++K++G VG  D  LL++IL HCT+ QL HIE+++  
Sbjct: 2   LFERLTKKPPSLVD-LCVRKAIDNVKYIGYVGGVDFQLLEQILQHCTLEQLKHIEDATDD 61

Query: 61  RDLTPVTDKLWKNFYEKKFGKNDYDFVIERMKHKKESFKWKQIYEAKMEEFEKKARKIEA 120
            DL+P+TDK WK FY+K +G+ D       MK   E  +W      K+ +F K     E 
Sbjct: 62  TDLSPITDKFWKGFYKKHYGEED-------MKDLIEDLEWN-----KVNDF-KWRNLYEL 121

Query: 121 RYIQNCQKEKAQKESRQIIFCGGSSPINKKRRFEGKSIEFGCNATESKLLKKSKREEQIC 180
           + I   QKEK           GG      K R++ ++             +K  R+ ++C
Sbjct: 122 KVIAVQQKEKE---------LGG----RLKERYKDENE------------RKQSRQTKVC 181

Query: 181 EVSSMNNNKKKQSFGGTTKPRHNTK--PTKIWKKAKREALQCIETKNLIAFRRNAMQK 237
             +  +    K+ F G +   +N     + I KKAK + L+  E KNL A +RN +QK
Sbjct: 182 SKAPPS----KRPFWGNSASGYNLGHVKSNIMKKAKIDLLKSQEVKNLTAIKRNTIQK 196

[Close]

BLAST of ClCG05G006090 vs. NCBI nr
Match: gi|700193830|gb|KGN49034.1| (hypothetical protein Csa_6G511010 [Cucumis sativus])

HSP 1 Score: 198.7 bits (504), Expect = 1.1e-47
Identity = 98/176 (55.68%), Postives = 130/176 (73.86%), Query Frame = 1


Query: 15  NLSINEAIDSLKFLGDVGDADLNLLDRILPHCTINQLMHIENSSKGRDLTPVTDKLWKNF 74
           N  +N+AIDS+KFLGDVGD DL  L+ IL HCT +QL+HIEN SKGRDLTP+T+KLWKNF
Sbjct: 12  NSDVNKAIDSVKFLGDVGDTDLRSLESILSHCTADQLLHIENCSKGRDLTPITNKLWKNF 71

Query: 75  YEKKFGKNDYDFVIERMKHKKESFKWKQIYEAKMEEFEKKARKIEARYIQNCQKEKAQKE 134
           YE+KFGK+D D V+     K E+FKW  +Y AKM+E E +A+KIE R IQ+ QKEKA+K+
Sbjct: 72  YERKFGKDDVDIVV-----KNETFKWMDLYVAKMKELENRAKKIEDRIIQSYQKEKARKQ 131

Query: 135 SRQIIFCGG-SSPINKKRRFEGKSIEFGCNATESKLLKKSKREEQICEVSSMNNNK 190
           SRQI+FCG   S ++ K     +++ F  N T+S  LKK+KRE  + +VS+ +N +
Sbjct: 132 SRQIVFCGSEDSLLSNKNPKSNRTVGFKSNTTKSVTLKKAKRELHVPKVSTSSNKE 182

[Close]

BLAST of ClCG05G006090 vs. NCBI nr
Match: gi|449450878|ref|XP_004143189.1| (PREDICTED: transcription elongation factor B polypeptide 3 [Cucumis sativus])

HSP 1 Score: 191.4 bits (485), Expect = 1.8e-45
Identity = 96/194 (49.48%), Postives = 131/194 (67.53%), Query Frame = 1


Query: 13  LNNLSINEAIDSLKFLGDVGDADLNLLDRILPHCTINQLMHIENSSKGRDLTPVTDKLWK 72
           L +L +N+AID+L+FLGDVG+ D++LLDRILPHCT++QLMH+E SS+GRDLTPVTDKLWK
Sbjct: 10  LVDLCVNKAIDNLRFLGDVGETDIHLLDRILPHCTVDQLMHVEKSSEGRDLTPVTDKLWK 69

Query: 73  NFYEKKFGKNDYDFVIERMKHKKESFKWKQIYEAKMEEFEKKARKIEARYIQNCQKEKAQ 132
            FYE++FGK     VIERM+ K+ +F+W Q+YEAKME+ EK   K   R  Q+  KE A+
Sbjct: 70  KFYERQFGKESTTTVIERMRQKRVAFRWIQLYEAKMEDIEKNESKAADRIKQSYLKENAR 129

Query: 133 KESRQIIFCGGSSPINKKRRFEGKSIEFGCNATESKLLKKSKRE----EQICEVSSMNNN 192
           K+SRQI  C    P + KR F G    +    T++K+LKK+K E    +++  + +   N
Sbjct: 130 KQSRQIQICSKVPPSSNKRSFGGSGYGYNVANTKNKILKKAKIEVLQSQEMKNIKAWRRN 189

Query: 193 --KKKQSFGGTTKP 201
             +K      T KP
Sbjct: 190 AVQKSSDISSTKKP 203

[Close]

BLAST of ClCG05G006090 vs. NCBI nr
Match: gi|449450878|ref|XP_004143189.1| (PREDICTED: transcription elongation factor B polypeptide 3 [Cucumis sativus])

HSP 1 Score: 148.7 bits (374), Expect = 1.3e-32
Identity = 94/226 (41.59%), Postives = 129/226 (57.08%), Query Frame = 1


Query: 13  LNNLSINEAIDSLKFLGDVGDADLNLLDRILPHCTINQLMHIENSSKGRDLTPVTDKLWK 72
           L +L +N+AID+L+FLGDVG+ D++LLDRILPHCT++QLMH+E SS+GRDLTPVTDKLWK
Sbjct: 10  LVDLCVNKAIDNLRFLGDVGETDIHLLDRILPHCTVDQLMHVEKSSEGRDLTPVTDKLWK 69

Query: 73  NFYEKKFGKNDYDFVIERMKHKKESFKWKQIYEAKMEEFEKKARKIEARYIQNCQKEKAQ 132
            FYE++FGK     VIERM+                       +++  R+IQ  + +   
Sbjct: 70  KFYERQFGKESTTTVIERMRQ----------------------KRVAFRWIQLYEAKMED 129

Query: 133 KESRQIIFCGGSSPINKKRRFEGKSIEFGCNATESKLLKKSKREEQICEVSSMNNNKKKQ 192
            E                   E K+ +    +   +  +K  R+ QIC     ++NK+  
Sbjct: 130 IEKN-----------------ESKAADRIKQSYLKENARKQSRQIQICSKVPPSSNKR-- 189

Query: 193 SFGGTTKPRH--NTKPTKIWKKAKREALQCIETKNLIAFRRNAMQK 237
           SFGG+    +  NTK  KI KKAK E LQ  E KN+ A+RRNA+QK
Sbjct: 190 SFGGSGYGYNVANTK-NKILKKAKIEVLQSQEMKNIKAWRRNAVQK 193

HSP 2 Score: 187.2 bits (474), Expect = 3.3e-44
Identity = 93/194 (47.94%), Postives = 131/194 (67.53%), Query Frame = 1


Query: 13  LNNLSINEAIDSLKFLGDVGDADLNLLDRILPHCTINQLMHIENSSKGRDLTPVTDKLWK 72
           L +L +N+AID+++FLGDVG+ D++LL+RILPHCT++QLMH+E SS+GRDLTPVTDKLWK
Sbjct: 10  LVDLCVNKAIDNIRFLGDVGETDIHLLERILPHCTVDQLMHVEKSSEGRDLTPVTDKLWK 69

Query: 73  NFYEKKFGKNDYDFVIERMKHKKESFKWKQIYEAKMEEFEKKARKIEARYIQNCQKEKAQ 132
            FYE++FGK     VIERM+ K+ +F+W Q+YEAKM++ EK   K   R  Q+  KE A+
Sbjct: 70  KFYERQFGKESTTTVIERMRQKRVAFRWIQLYEAKMQDIEKNESKAADRIKQSYLKENAR 129

Query: 133 KESRQIIFCGGSSPINKKRRFEGKSIEFGCNATESKLLKKSKRE----EQICEVSSMNNN 192
           K+SRQI  C    P + KR F G    +    T++K+LKK+K E    +++  + +   N
Sbjct: 130 KQSRQIQICSKVPPSSNKRSFGGSGYGYNVANTKNKILKKAKIEVLQSQEMKNIKAWRRN 189

Query: 193 --KKKQSFGGTTKP 201
             +K      T KP
Sbjct: 190 AVQKSSDIPSTKKP 203

[Close]

BLAST of ClCG05G006090 vs. NCBI nr
Match: gi|659112953|ref|XP_008456387.1| (PREDICTED: uncharacterized protein LOC103496337 [Cucumis melo])

HSP 1 Score: 146.4 bits (368), Expect = 6.5e-32
Identity = 92/226 (40.71%), Postives = 129/226 (57.08%), Query Frame = 1


Query: 13  LNNLSINEAIDSLKFLGDVGDADLNLLDRILPHCTINQLMHIENSSKGRDLTPVTDKLWK 72
           L +L +N+AID+++FLGDVG+ D++LL+RILPHCT++QLMH+E SS+GRDLTPVTDKLWK
Sbjct: 10  LVDLCVNKAIDNIRFLGDVGETDIHLLERILPHCTVDQLMHVEKSSEGRDLTPVTDKLWK 69

Query: 73  NFYEKKFGKNDYDFVIERMKHKKESFKWKQIYEAKMEEFEKKARKIEARYIQNCQKEKAQ 132
            FYE++FGK     VIERM+                       +++  R+IQ  + +   
Sbjct: 70  KFYERQFGKESTTTVIERMRQ----------------------KRVAFRWIQLYEAKMQD 129

Query: 133 KESRQIIFCGGSSPINKKRRFEGKSIEFGCNATESKLLKKSKREEQICEVSSMNNNKKKQ 192
            E                   E K+ +    +   +  +K  R+ QIC     ++NK+  
Sbjct: 130 IEKN-----------------ESKAADRIKQSYLKENARKQSRQIQICSKVPPSSNKR-- 189

Query: 193 SFGGTTKPRH--NTKPTKIWKKAKREALQCIETKNLIAFRRNAMQK 237
           SFGG+    +  NTK  KI KKAK E LQ  E KN+ A+RRNA+QK
Sbjct: 190 SFGGSGYGYNVANTK-NKILKKAKIEVLQSQEMKNIKAWRRNAVQK 193

HSP 2 Score: 171.4 bits (433), Expect = 1.9e-39
Identity = 84/190 (44.21%), Postives = 129/190 (67.89%), Query Frame = 1


Query: 13  LNNLSINEAIDSLKFLGDVGDADLNLLDRILPHCTINQLMHIENSSKGRDLTPVTDKLWK 72
           L +L I  AID++++LGDVG+ D +LL+RILPHCT++QL+H+E S+KGRDL+PVTDKLWK
Sbjct: 22  LVDLCIRTAIDNVRYLGDVGETDSHLLERILPHCTMDQLIHVEKSTKGRDLSPVTDKLWK 81

Query: 73  NFYEKKFGKNDYDFVIERMKHKKESFKWKQIYEAKMEEFEKKARKIEARYIQNCQKEKAQ 132
           NFYE +FG+   + VIERMK KK SF+W+Q+YEAK+++ ++   K   R  Q  +KE A+
Sbjct: 82  NFYELQFGRASTNLVIERMKLKKVSFRWRQLYEAKLKDVQEAENKAIDRLKQLYKKEDAR 141

Query: 133 KESRQIIFCGGSSPINKKRRFEGKSIEFGCNATESKLLKKSK----REEQICEVSSMNNN 192
           K+SRQ+  C    P +K+  F G    +  +  +S ++KK+K    + +++  +++M   
Sbjct: 142 KQSRQVQLCTKVPPSSKRSFFAGSGPGYNLSYVKSNIMKKAKIDLMKSQEVKNLAAMKKK 201

Query: 193 KKKQSFGGTT 199
             +    GTT
Sbjct: 202 AVQTHHRGTT 211

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BLAST of ClCG05G006090 vs. NCBI nr
Match: gi|590710292|ref|XP_007048788.1| (Nucleus, subunit A, putative isoform 2 [Theobroma cacao])

HSP 1 Score: 99.8 bits (247), Expect = 7.0e-18
Identity = 71/227 (31.28%), Postives = 112/227 (49.34%), Query Frame = 1


Query: 13  LNNLSINEAIDSLKFLGDVGDADLNLLDRILPHCTINQLMHIENSSKGRDLTPVTDKLWK 72
           L +L I  AID++++LGDVG+ D +LL+RILPHCT++QL+H+E S+KGRDL+PVTDKLWK
Sbjct: 22  LVDLCIRTAIDNVRYLGDVGETDSHLLERILPHCTMDQLIHVEKSTKGRDLSPVTDKLWK 81

Query: 73  NFYEKKFGKNDYDFVIERMKHKK--ESFKWKQIYEAKMEEFEKKARKIEARYIQNCQKEK 132
                    N Y+    R       E  K K++     + +E K + ++           
Sbjct: 82  ---------NFYELQFGRASTNLVIERMKLKKVSFRWRQLYEAKLKDVQEA--------- 141

Query: 133 AQKESRQIIFCGGSSPINKKRRFEGKSIEFGCNATESKLLKKSKREEQICEVSSMNNNKK 192
                                  E K+I+      + +  +K  R+ Q+C     ++   
Sbjct: 142 -----------------------ENKAIDRLKQLYKKEDARKQSRQVQLCTKVPPSS--- 201

Query: 193 KQSFGGTTKPRHNTK--PTKIWKKAKREALQCIETKNLIAFRRNAMQ 236
           K+SF   + P +N     + I KKAK + ++  E KNL A ++ A+Q
Sbjct: 202 KRSFFAGSGPGYNLSYVKSNIMKKAKIDLMKSQEVKNLAAMKKKAVQ 204

HSP 2 Score: 170.6 bits (431), Expect = 3.2e-39
Identity = 89/198 (44.95%), Postives = 130/198 (65.66%), Query Frame = 1


Query: 13  LNNLSINEAIDSLKFLGDVGDADLNLLDRILPHCTINQLMHIENSSKGRDLTPVTDKLWK 72
           L +L +  AID++++LGDVG+ D +LLDRIL HCT++QL HIEN ++GRDL+PVTDKLWK
Sbjct: 8   LVDLCVQLAIDNVRYLGDVGETDFHLLDRILSHCTLDQLTHIENKTEGRDLSPVTDKLWK 67

Query: 73  NFYEKKFGKNDYDFVIERMKHKKESFKWKQIYEAKMEEFEKKARKIEARYIQNCQKEKAQ 132
            FY+ +FG +  + V+ERM+ +K +FKW+Q+YEAK++E E+  +K   R  Q  Q+E A+
Sbjct: 68  KFYKLQFGVDSTNTVVERMRQRKVTFKWRQLYEAKVKEREEATQKSLDRIKQRYQEEDAR 127

Query: 133 KESRQIIFCGGSSPINKKRRFEGKSIEFGCNATESKLLKKSKRE----EQICEVSSMNNN 192
           K+SRQ+  C    P +KKR F G         T+S LLKK+K E     ++  +++M N 
Sbjct: 128 KQSRQVQLCSKVPPPSKKRSFYGGVAASNIYNTKSGLLKKAKLEFINSREVKNIAAMKNK 187

Query: 193 --KKKQSFGGTTKPRHNT 205
              +  S   T KP  N+
Sbjct: 188 VVHRNHSVSSTRKPIVNS 205

The following BLAST results are available for this feature:

BLAST of ClCG05G006090 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KJR8_CUCSA	7.7e-48	55.68	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G511010 PE=4 SV=1	[more]
A0A061DJY1_THECC	1.3e-39	44.21	Nucleus, subunit A, putative isoform 2 OS=Theobroma cacao GN=TCM_001808 PE=4 SV=...	[more]
A0A061DJY1_THECC	4.8e-18	31.28	Nucleus, subunit A, putative isoform 2 OS=Theobroma cacao GN=TCM_001808 PE=4 SV=...	[more]
A0A0D2RUW6_GOSRA	1.4e-20	32.00	Uncharacterized protein OS=Gossypium raimondii GN=B456_006G004800 PE=4 SV=1	[more]
A0A0B0MEQ4_GOSAR	8.5e-39	42.63	Elongin-A OS=Gossypium arboreum GN=F383_13223 PE=4 SV=1	[more]

BLAST of ClCG05G006090 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G42780.1	4.9e-30	33.33	FUNCTIONS IN: molecular_function unknown	[more]

BLAST of ClCG05G006090 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700193830\|gb\|KGN49034.1\|	1.1e-47	55.68	hypothetical protein Csa_6G511010 [Cucumis sativus]	[more]
gi\|449450878\|ref\|XP_004143189.1\|	1.8e-45	49.48	PREDICTED: transcription elongation factor B polypeptide 3 [Cucumis sativus]	[more]
gi\|449450878\|ref\|XP_004143189.1\|	1.3e-32	41.59	PREDICTED: transcription elongation factor B polypeptide 3 [Cucumis sativus]	[more]
gi\|659112953\|ref\|XP_008456387.1\|	6.5e-32	40.71	PREDICTED: uncharacterized protein LOC103496337 [Cucumis melo]	[more]
gi\|590710292\|ref\|XP_007048788.1\|	7.0e-18	31.28	Nucleus, subunit A, putative isoform 2 [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR010684	RNA_pol_II_trans_fac_SIII_A

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus
GO:0016021	integral component of membrane

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG05G006090.1	ClCG05G006090.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010684	RNA polymerase II transcription factor SIII, subunit A	PFAM	PF06881	Elongin_A	coord: 29..138 score: 2.5
None	No IPR available	unknown	Coil	Coil	coord: 101..121 scor
None	No IPR available	PANTHER	PTHR15141	TRANSCRIPTION ELONGATION FACTOR B POLYPEPTIDE 3	coord: 13..205 score: 2.1
None	No IPR available	PANTHER	PTHR15141:SF53	PROTEIN T23E1.3, ISOFORM A	coord: 13..205 score: 2.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG05G006090	Cla021739	Watermelon (97103) v1	wcgwmB286

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG05G006090	Bottle gourd (USVL1VR-Ls)	lsiwcgB017
ClCG05G006090	Bottle gourd (USVL1VR-Ls)	lsiwcgB333
ClCG05G006090	Cucumber (Gy14) v2	cgybwcgB203
ClCG05G006090	Melon (DHL92) v3.6.1	medwcgB115
ClCG05G006090	Melon (DHL92) v3.6.1	medwcgB416
ClCG05G006090	Silver-seed gourd	carwcgB0072
ClCG05G006090	Silver-seed gourd	carwcgB0588
ClCG05G006090	Silver-seed gourd	carwcgB0680
ClCG05G006090	Silver-seed gourd	carwcgB0807
ClCG05G006090	Cucumber (Chinese Long) v3	cucwcgB225
ClCG05G006090	Watermelon (97103) v2	wcgwmbB229
ClCG05G006090	Watermelon (97103) v2	wcgwmbB238
ClCG05G006090	Wax gourd	wcgwgoB418
ClCG05G006090	Wax gourd	wcgwgoB426
ClCG05G006090	Watermelon (Charleston Gray)	wcgwcgB160
ClCG05G006090	Cucumber (Gy14) v1	cgywcgB451
ClCG05G006090	Cucurbita maxima (Rimu)	cmawcgB003
ClCG05G006090	Cucurbita maxima (Rimu)	cmawcgB233
ClCG05G006090	Cucurbita maxima (Rimu)	cmawcgB320
ClCG05G006090	Cucurbita maxima (Rimu)	cmawcgB737
ClCG05G006090	Cucurbita maxima (Rimu)	cmawcgB796
ClCG05G006090	Cucurbita moschata (Rifu)	cmowcgB219
ClCG05G006090	Cucurbita moschata (Rifu)	cmowcgB316
ClCG05G006090	Cucurbita moschata (Rifu)	cmowcgB743
ClCG05G006090	Cucurbita moschata (Rifu)	cmowcgB792
ClCG05G006090	Wild cucumber (PI 183967)	cpiwcgB069
ClCG05G006090	Wild cucumber (PI 183967)	cpiwcgB226
ClCG05G006090	Cucumber (Chinese Long) v2	cuwcgB222
ClCG05G006090	Melon (DHL92) v3.5.1	mewcgB121
ClCG05G006090	Melon (DHL92) v3.5.1	mewcgB427
ClCG05G006090	Watermelon (97103) v1	wcgwmB311
ClCG05G006090	Cucurbita pepo (Zucchini)	cpewcgB139
ClCG05G006090	Cucurbita pepo (Zucchini)	cpewcgB291
ClCG05G006090	Cucurbita pepo (Zucchini)	cpewcgB559
ClCG05G006090	Cucurbita pepo (Zucchini)	cpewcgB787