ClCG05G004460.1 (mRNA) Watermelon (Charleston Gray)

Overview
NameClCG05G004460.1
TypemRNA
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionUnknown protein
LocationCG_Chr05 : 4191906 .. 4192380 (+)
Sequence length357
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGGACTATGCGATCTCTAGCGGCGGATTTGGAGGCGGCTGTTTGGGCCCAGGGAAGGTCGAAGCCGTTGGAGAAGAAACGGCCATGGGAAGTGGTGAGAAGGACTGAACCGCGAGTGGCTTGGGACTTGAGTTGGGCCAGAAGAGAAAGGAAGGAGGAAATGAAATTGGGGCTGATCCAGTGCTCGTTGTCGCCGGTGAGTGTGAGGATAAACAGACAGCCACGCTTCTCCAGAGTGCACATGTCGTGGTTTGAACCAAATAGCGTAAAGAGTTTTGTTGAATAAAGCTGTTTAGTTGTGGTGTGTAAAATGTAAACAAATAGAGAAGACGAAGGGATGAGAAAGCGGCACGCATTTCTAAGTATTTGGAAGCTCATGTCAGGGACCACCCATCTCTCCATTTGGCCCTGCCGTGGCATCTTCTGTTTTTCCCCAATTTCACACTACTGTCCCAAAAAAATGGGTTAATTAA

mRNA sequence

ATGTGGACTATGCGATCTCTAGCGGCGGATTTGGAGGCGGCTGTTTGGGCCCAGGGAAGGTCGAAGCCGTTGGAGAAGAAACGGCCATGGGAAGTGGTGAGAAGGACTGAACCGCGAGTGGCTTGGGACTTGAGTTGGGCCAGAAGAGAAAGGAAGGAGGAAATGAAATTGGGGCTGATCCAGTGCTCGTTGTCGCCGGTGAGTGTGAGGATAAACAGACAGCCACGCTTCTCCAGAGTGCACATGTCGTGGTTTGAACCAAATAGCGGACCACCCATCTCTCCATTTGGCCCTGCCGTGGCATCTTCTGTTTTTCCCCAATTTCACACTACTGTCCCAAAAAAATGGGTTAATTAA

Coding sequence (CDS)

ATGTGGACTATGCGATCTCTAGCGGCGGATTTGGAGGCGGCTGTTTGGGCCCAGGGAAGGTCGAAGCCGTTGGAGAAGAAACGGCCATGGGAAGTGGTGAGAAGGACTGAACCGCGAGTGGCTTGGGACTTGAGTTGGGCCAGAAGAGAAAGGAAGGAGGAAATGAAATTGGGGCTGATCCAGTGCTCGTTGTCGCCGGTGAGTGTGAGGATAAACAGACAGCCACGCTTCTCCAGAGTGCACATGTCGTGGTTTGAACCAAATAGCGGACCACCCATCTCTCCATTTGGCCCTGCCGTGGCATCTTCTGTTTTTCCCCAATTTCACACTACTGTCCCAAAAAAATGGGTTAATTAA

Protein sequence

MWTMRSLAADLEAAVWAQGRSKPLEKKRPWEVVRRTEPRVAWDLSWARRERKEEMKLGLIQCSLSPVSVRINRQPRFSRVHMSWFEPNSGPPISPFGPAVASSVFPQFHTTVPKKWVN
Homology
[Close]
BLAST of ClCG05G004460.1 vs. TrEMBL
Match: A0A0A0L773_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G141800 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.0e-08
Identity = 38/74 (51.35%), Postives = 47/74 (63.51%), Query Frame = 1 

Query: 11 LEAAVWAQGRSKPLEKKRPWEVVRRTEP--RVAWDLSWARRERKEEMKLGLIQCSLSPVS 70
          +E A    GRS+PLEK  PW+VV RTEP   +A  L+W R    E +K G  QCS  PVS
Sbjct: 1  MEEAERIHGRSRPLEKNLPWDVVIRTEPGEALASALTWDRALSMEFIKDGFSQCSWLPVS 60

Query: 71 VRINRQPRFSRVHM 83
          VR+N  PRFS +H+
Sbjct: 61 VRMNSFPRFSILHI 74

[Close]
BLAST of ClCG05G004460.1 vs. NCBI nr
Match: gi|700201751|gb|KGN56884.1| (hypothetical protein Csa_3G141800 [Cucumis sativus])

HSP 1 Score: 67.8 bits (164), Expect = 1.5e-08
Identity = 38/74 (51.35%), Postives = 47/74 (63.51%), Query Frame = 1 

Query: 11 LEAAVWAQGRSKPLEKKRPWEVVRRTEP--RVAWDLSWARRERKEEMKLGLIQCSLSPVS 70
          +E A    GRS+PLEK  PW+VV RTEP   +A  L+W R    E +K G  QCS  PVS
Sbjct: 1  MEEAERIHGRSRPLEKNLPWDVVIRTEPGEALASALTWDRALSMEFIKDGFSQCSWLPVS 60

Query: 71 VRINRQPRFSRVHM 83
          VR+N  PRFS +H+
Sbjct: 61 VRMNSFPRFSILHI 74

The following BLAST results are available for this feature:
BLAST of ClCG05G004460.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L773_CUCSA1.0e-0851.35Uncharacterized protein OS=Cucumis sativus GN=Csa_3G141800 PE=4 SV=1[more]
BLAST of ClCG05G004460.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700201751|gb|KGN56884.1|1.5e-0851.35hypothetical protein Csa_3G141800 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
ClCG05G004460ClCG05G004460gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
ClCG05G004460.1ClCG05G004460.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
ClCG05G004460.1.cds1ClCG05G004460.1.cds1CDS
ClCG05G004460.1.cds2ClCG05G004460.1.cds2CDS