ClCG05G004460 (gene) Watermelon (Charleston Gray)

Overview
NameClCG05G004460
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionUnknown protein
LocationCG_Chr05 : 4191906 .. 4192380 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGGACTATGCGATCTCTAGCGGCGGATTTGGAGGCGGCTGTTTGGGCCCAGGGAAGGTCGAAGCCGTTGGAGAAGAAACGGCCATGGGAAGTGGTGAGAAGGACTGAACCGCGAGTGGCTTGGGACTTGAGTTGGGCCAGAAGAGAAAGGAAGGAGGAAATGAAATTGGGGCTGATCCAGTGCTCGTTGTCGCCGGTGAGTGTGAGGATAAACAGACAGCCACGCTTCTCCAGAGTGCACATGTCGTGGTTTGAACCAAATAGCGTAAAGAGTTTTGTTGAATAAAGCTGTTTAGTTGTGGTGTGTAAAATGTAAACAAATAGAGAAGACGAAGGGATGAGAAAGCGGCACGCATTTCTAAGTATTTGGAAGCTCATGTCAGGGACCACCCATCTCTCCATTTGGCCCTGCCGTGGCATCTTCTGTTTTTCCCCAATTTCACACTACTGTCCCAAAAAAATGGGTTAATTAA

mRNA sequence

ATGTGGACTATGCGATCTCTAGCGGCGGATTTGGAGGCGGCTGTTTGGGCCCAGGGAAGGTCGAAGCCGTTGGAGAAGAAACGGCCATGGGAAGTGGTGAGAAGGACTGAACCGCGAGTGGCTTGGGACTTGAGTTGGGCCAGAAGAGAAAGGAAGGAGGAAATGAAATTGGGGCTGATCCAGTGCTCGTTGTCGCCGGTGAGTGTGAGGATAAACAGACAGCCACGCTTCTCCAGAGTGCACATGTCGTGGTTTGAACCAAATAGCGGACCACCCATCTCTCCATTTGGCCCTGCCGTGGCATCTTCTGTTTTTCCCCAATTTCACACTACTGTCCCAAAAAAATGGGTTAATTAA

Coding sequence (CDS)

ATGTGGACTATGCGATCTCTAGCGGCGGATTTGGAGGCGGCTGTTTGGGCCCAGGGAAGGTCGAAGCCGTTGGAGAAGAAACGGCCATGGGAAGTGGTGAGAAGGACTGAACCGCGAGTGGCTTGGGACTTGAGTTGGGCCAGAAGAGAAAGGAAGGAGGAAATGAAATTGGGGCTGATCCAGTGCTCGTTGTCGCCGGTGAGTGTGAGGATAAACAGACAGCCACGCTTCTCCAGAGTGCACATGTCGTGGTTTGAACCAAATAGCGGACCACCCATCTCTCCATTTGGCCCTGCCGTGGCATCTTCTGTTTTTCCCCAATTTCACACTACTGTCCCAAAAAAATGGGTTAATTAA

Protein sequence

MWTMRSLAADLEAAVWAQGRSKPLEKKRPWEVVRRTEPRVAWDLSWARRERKEEMKLGLIQCSLSPVSVRINRQPRFSRVHMSWFEPNSGPPISPFGPAVASSVFPQFHTTVPKKWVN
Homology
[Close]
BLAST of ClCG05G004460 vs. TrEMBL
Match: A0A0A0L773_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G141800 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.0e-08
Identity = 38/74 (51.35%), Postives = 47/74 (63.51%), Query Frame = 1 

Query: 11 LEAAVWAQGRSKPLEKKRPWEVVRRTEP--RVAWDLSWARRERKEEMKLGLIQCSLSPVS 70
          +E A    GRS+PLEK  PW+VV RTEP   +A  L+W R    E +K G  QCS  PVS
Sbjct: 1  MEEAERIHGRSRPLEKNLPWDVVIRTEPGEALASALTWDRALSMEFIKDGFSQCSWLPVS 60

Query: 71 VRINRQPRFSRVHM 83
          VR+N  PRFS +H+
Sbjct: 61 VRMNSFPRFSILHI 74

[Close]
BLAST of ClCG05G004460 vs. NCBI nr
Match: gi|700201751|gb|KGN56884.1| (hypothetical protein Csa_3G141800 [Cucumis sativus])

HSP 1 Score: 67.8 bits (164), Expect = 1.5e-08
Identity = 38/74 (51.35%), Postives = 47/74 (63.51%), Query Frame = 1 

Query: 11 LEAAVWAQGRSKPLEKKRPWEVVRRTEP--RVAWDLSWARRERKEEMKLGLIQCSLSPVS 70
          +E A    GRS+PLEK  PW+VV RTEP   +A  L+W R    E +K G  QCS  PVS
Sbjct: 1  MEEAERIHGRSRPLEKNLPWDVVIRTEPGEALASALTWDRALSMEFIKDGFSQCSWLPVS 60

Query: 71 VRINRQPRFSRVHM 83
          VR+N  PRFS +H+
Sbjct: 61 VRMNSFPRFSILHI 74

The following BLAST results are available for this feature:
BLAST of ClCG05G004460 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L773_CUCSA1.0e-0851.35Uncharacterized protein OS=Cucumis sativus GN=Csa_3G141800 PE=4 SV=1[more]
BLAST of ClCG05G004460 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700201751|gb|KGN56884.1|1.5e-0851.35hypothetical protein Csa_3G141800 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0008152 metabolic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0005524 ATP binding
molecular_function GO:0004386 helicase activity
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0005515 protein binding
molecular_function GO:0016740 transferase activity
molecular_function GO:0008270 zinc ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG05G004460.1ClCG05G004460.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
ClCG05G004460Cucsa.255160Cucumber (Gy14) v1cgywcgB451
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG05G004460Cucurbita pepo (Zucchini)cpewcgB138
ClCG05G004460Cucurbita pepo (Zucchini)cpewcgB293
ClCG05G004460Cucurbita pepo (Zucchini)cpewcgB559
ClCG05G004460Cucurbita pepo (Zucchini)cpewcgB787
ClCG05G004460Bottle gourd (USVL1VR-Ls)lsiwcgB016
ClCG05G004460Bottle gourd (USVL1VR-Ls)lsiwcgB335
ClCG05G004460Cucumber (Gy14) v2cgybwcgB129
ClCG05G004460Cucumber (Gy14) v2cgybwcgB203
ClCG05G004460Melon (DHL92) v3.6.1medwcgB376
ClCG05G004460Melon (DHL92) v3.6.1medwcgB416
ClCG05G004460Silver-seed gourdcarwcgB0220
ClCG05G004460Silver-seed gourdcarwcgB0226
ClCG05G004460Silver-seed gourdcarwcgB0935
ClCG05G004460Silver-seed gourdcarwcgB1045
ClCG05G004460Cucumber (Chinese Long) v3cucwcgB148
ClCG05G004460Cucumber (Chinese Long) v3cucwcgB225
ClCG05G004460Watermelon (97103) v2wcgwmbB229
ClCG05G004460Watermelon (97103) v2wcgwmbB237
ClCG05G004460Watermelon (97103) v2wcgwmbB242
ClCG05G004460Wax gourdwcgwgoB412
ClCG05G004460Wax gourdwcgwgoB447
ClCG05G004460Wax gourdwcgwgoB450
ClCG05G004460Watermelon (Charleston Gray)wcgwcgB160
ClCG05G004460Watermelon (Charleston Gray)wcgwcgB164
ClCG05G004460Cucumber (Gy14) v1cgywcgB653
ClCG05G004460Cucurbita maxima (Rimu)cmawcgB233
ClCG05G004460Cucurbita maxima (Rimu)cmawcgB319
ClCG05G004460Cucurbita maxima (Rimu)cmawcgB464
ClCG05G004460Cucurbita maxima (Rimu)cmawcgB737
ClCG05G004460Cucurbita maxima (Rimu)cmawcgB795
ClCG05G004460Cucurbita moschata (Rifu)cmowcgB219
ClCG05G004460Cucurbita moschata (Rifu)cmowcgB315
ClCG05G004460Cucurbita moschata (Rifu)cmowcgB743
ClCG05G004460Cucurbita moschata (Rifu)cmowcgB792
ClCG05G004460Wild cucumber (PI 183967)cpiwcgB141
ClCG05G004460Wild cucumber (PI 183967)cpiwcgB226
ClCG05G004460Cucumber (Chinese Long) v2cuwcgB136
ClCG05G004460Cucumber (Chinese Long) v2cuwcgB222
ClCG05G004460Melon (DHL92) v3.5.1mewcgB385
ClCG05G004460Melon (DHL92) v3.5.1mewcgB427
ClCG05G004460Watermelon (97103) v1wcgwmB271
ClCG05G004460Watermelon (97103) v1wcgwmB286
ClCG05G004460Watermelon (97103) v1wcgwmB311