ClCG05G004260.1 (mRNA) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG05G004260.1
Type	mRNA
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	60S ribosomal protein L14, putative
Location	CG_Chr05 : 3910641 .. 3912503 (+)
Sequence length	730

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGGGAATAATAAACCCTAGTTTCGACATTGGCACTGTACAATCTTCTTTCTTCTCCCGCCCCTATCTGAAACCTCTGCACACCGACGATGGTAAGCATTCCCCTCCTTAGTTTCTCTCTTTCTAACTACGAATCTACGGCATTTGTTGGTATTATTTTCTTCCCTTCTTTCTTCCTGCCAATTGTTCTGAATTGTTTGTTCTTTCATTCCTTCTGTAGCCGTTTAAAAGGTACGTTGAGATCGGAAGAGTCGCTCTCGTCAACTATGGCGAAGACTATGGAAAGCTTGTCGTCATCGTCGATGTTATTGACCAGAACAGAGTATGTTTCCTTTTGCTATTACTTGTGGTTTTTATCGACGATTACTAGTTTTCAGCTTTAAGTTGTACCAATCCTCTTGCCAATTAGAAAGTCCCGGATTTTTCACTCTTATTATTCTGTTACTGTGAATTCGTTTCTCCTGAATTGCAGTTTACATGATGATCCGAAGACATGCTTCTCATTATTCTGTCATTTATCATTATCATTTATGAAAATCACTCCTCAGCCTCTTCAAGCTCTTCTGGTTGAAATGATAATTGTTGAAATAAACTACAGCATTGCTTATTTAACTTCAGATTCATAGAGTAGGTCATTCTCGTTGGTTACCTGTTACTGATCGTTAGAATGGTTGAGTATGCAAATTATTATTTATCAATGGTTTTCTCTGACGGTCCTCCACCAGCTAGAATGGATTTTTGGTTGCGGAGCTCATGAATTTTACTGTTTCTACTACTTCCCATGAATCTATAGATGCAGATACATGTCATACTAAATTTTTGTGAGGCGTTGAAGCTTGCAGTCTCATGGGAACTTTCCTTTTCTTTCTTCCAACTGAATGTGATTGTACAATATCAATTTTTATTGGTTGAAAGAGTATCTGGATGAAATTATCATTCGTCCACAGTCTAGTTTTTAATTTTATATATATATGTATTTTAATGCTACCACATACAGGCTTTGGTGGATGCTCCCGATATGGTCAGATCTCAAATGAACTTCAAGAGACTTTCTCTTACTGACATTAAAATTGACATTAAGAGGGTCCCTAGGAAGAAGGAACTCATTGAAGCTATGAAGGCTGCTGGTACCCTTCTTAACTTAATTTTCACTTATAAATGCTCATTACCCCTACGTTTCTTGTTTTCTTGTCTTTTGGTTTGCTTTAACCTGTTGTTTTGATTGATCATGTCAGATGTTCAGAAGAAGTGGGAGGATAGCTCTTGGGGGAGAAAATTACTCGTGAAGAAAAGAAGGGCATCTCTTAATGATTTTGATAGGTTCAAGCTTATGCTGGCTAAGATAAAGGTCAGTGATAATGTGATTCAATCTATAGTTTGTACATTTTTTTTGTTACCTTTTCGTATGTGTTGACATATGAAAGAGTGCTAAACAAGTTCTATTTTAGAGTGTGAAAGAAGTTTTGTTTTATTTGTCATTAAAAAGAATTTTCTACTGTGTTGTGTTCTTGCTATTTGCTAGATAATTACTCAATGCTTACGGATGAGCATTTTATTTATTTATTTGCAGAGAGCTGGATTGGTGAGGCAAGAACTTGCAAAGCTGAAAAAAAGTGCATCTTAGAAAGTGCGTTTCTTTAGCTTCAAATTTTGTTACATGTTAAAGTTATCAGTTTTGGATTGTTTTCTCTCTTGTTTCTCTAGCCCTCTGGAGTTCGCGATTGTTTTGAGGTGTATGGGATTCTAGACATCCAGTGTAGTGAGTTTTTATTTAACTTTTTCACAAGATGTCCACATTACTCCAATTAAGCATTAATCTGAATCTTTTGATGTTTTTCTGCCTAACTGTTAAATTGGATTGCTG

mRNA sequence

AAGGGAATAATAAACCCTAGTTTCGACATTGGCACTGTACAATCTTCTTTCTTCTCCCGCCCCTATCTGAAACCTCTGCACACCGACGATGCCGTTTAAAAGGTACGTTGAGATCGGAAGAGTCGCTCTCGTCAACTATGGCGAAGACTATGGAAAGCTTGTCGTCATCGTCGATGTTATTGACCAGAACAGAGCTTTGGTGGATGCTCCCGATATGGTCAGATCTCAAATGAACTTCAAGAGACTTTCTCTTACTGACATTAAAATTGACATTAAGAGGGTCCCTAGGAAGAAGGAACTCATTGAAGCTATGAAGGCTGCTGATGTTCAGAAGAAGTGGGAGGATAGCTCTTGGGGGAGAAAATTACTCGTGAAGAAAAGAAGGGCATCTCTTAATGATTTTGATAGGTTCAAGCTTATGCTGGCTAAGATAAAGAGAGCTGGATTGGTGAGGCAAGAACTTGCAAAGCTGAAAAAAAGTGCATCTTAGAAAGTGCGTTTCTTTAGCTTCAAATTTTGTTACATGTTAAAGTTATCAGTTTTGGATTGTTTTCTCTCTTGTTTCTCTAGCCCTCTGGAGTTCGCGATTGTTTTGAGGTGTATGGGATTCTAGACATCCAGTGTAGTGAGTTTTTATTTAACTTTTTCACAAGATGTCCACATTACTCCAATTAAGCATTAATCTGAATCTTTTGATGTTTTTCTGCCTAACTGTTAAATTGGATTGCTG

Coding sequence (CDS)

ATGCCGTTTAAAAGGTACGTTGAGATCGGAAGAGTCGCTCTCGTCAACTATGGCGAAGACTATGGAAAGCTTGTCGTCATCGTCGATGTTATTGACCAGAACAGAGCTTTGGTGGATGCTCCCGATATGGTCAGATCTCAAATGAACTTCAAGAGACTTTCTCTTACTGACATTAAAATTGACATTAAGAGGGTCCCTAGGAAGAAGGAACTCATTGAAGCTATGAAGGCTGCTGATGTTCAGAAGAAGTGGGAGGATAGCTCTTGGGGGAGAAAATTACTCGTGAAGAAAAGAAGGGCATCTCTTAATGATTTTGATAGGTTCAAGCTTATGCTGGCTAAGATAAAGAGAGCTGGATTGGTGAGGCAAGAACTTGCAAAGCTGAAAAAAAGTGCATCTTAG

Protein sequence

MPFKRYVEIGRVALVNYGEDYGKLVVIVDVIDQNRALVDAPDMVRSQMNFKRLSLTDIKIDIKRVPRKKELIEAMKAADVQKKWEDSSWGRKLLVKKRRASLNDFDRFKLMLAKIKRAGLVRQELAKLKKSAS

Homology

[Close]

BLAST of ClCG05G004260.1 vs. Swiss-Prot
Match: RL142_ARATH (60S ribosomal protein L14-2 OS=Arabidopsis thaliana GN=RPL14B PE=2 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 2.1e-56
Identity = 110/130 (84.62%), Postives = 119/130 (91.54%), Query Frame = 1


Query: 1   MPFKRYVEIGRVALVNYGEDYGKLVVIVDVIDQNRALVDAPDMVRSQMNFKRLSLTDIKI 60
           M FKRYVEIGRVALVNYGED+GKLVVIVDV+DQNRALVDAPDM R QMNFKRLSLTDI I
Sbjct: 1   MGFKRYVEIGRVALVNYGEDHGKLVVIVDVVDQNRALVDAPDMERIQMNFKRLSLTDIVI 60

Query: 61  DIKRVPRKKELIEAMKAADVQKKWEDSSWGRKLLVKKRRASLNDFDRFKLMLAKIKRAGL 120
           DI RVP+KK LIEAM+ ADV+ KWE SSWGRKL+V+KRRA+LNDFDRFK+MLAKIK+AG+
Sbjct: 61  DINRVPKKKALIEAMEKADVKNKWEKSSWGRKLIVQKRRANLNDFDRFKIMLAKIKKAGV 120

Query: 121 VRQELAKLKK 131
           VRQELAKLKK
Sbjct: 121 VRQELAKLKK 130

[Close]

BLAST of ClCG05G004260.1 vs. Swiss-Prot
Match: RL141_ARATH (60S ribosomal protein L14-1 OS=Arabidopsis thaliana GN=RPL14A PE=2 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 8.1e-56
Identity = 109/130 (83.85%), Postives = 118/130 (90.77%), Query Frame = 1


Query: 1   MPFKRYVEIGRVALVNYGEDYGKLVVIVDVIDQNRALVDAPDMVRSQMNFKRLSLTDIKI 60
           M FKR+VEIGRVALVNYGEDYGKLVVIVDV+DQNRALVDAPDM R QMN KRLSLTDI I
Sbjct: 1   MGFKRFVEIGRVALVNYGEDYGKLVVIVDVVDQNRALVDAPDMERIQMNLKRLSLTDIVI 60

Query: 61  DIKRVPRKKELIEAMKAADVQKKWEDSSWGRKLLVKKRRASLNDFDRFKLMLAKIKRAGL 120
           DI RVP+KK LIEAM+ ADV+ KWE SSWGRKL+V+KRRA+LNDFDRFK+MLAKIKRAG+
Sbjct: 61  DINRVPKKKVLIEAMEKADVKNKWEKSSWGRKLIVQKRRAALNDFDRFKIMLAKIKRAGI 120

Query: 121 VRQELAKLKK 131
           VRQELAKLK+
Sbjct: 121 VRQELAKLKR 130

[Close]

BLAST of ClCG05G004260.1 vs. Swiss-Prot
Match: RL14_PEA (Probable 60S ribosomal protein L14 OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 1.1e-55
Identity = 107/133 (80.45%), Postives = 122/133 (91.73%), Query Frame = 1


Query: 1   MPFKRYVEIGRVALVNYGEDYGKLVVIVDVIDQNRALVDAPDMVRSQMNFKRLSLTDIKI 60
           MPFKR+VEIGRVAL+NYG+DYG+LVVIVDVIDQ RALVDAPDM RS +NFKRLSLTD+KI
Sbjct: 1   MPFKRFVEIGRVALINYGKDYGRLVVIVDVIDQTRALVDAPDMERSPINFKRLSLTDLKI 60

Query: 61  DIKRVPRKKELIEAMKAADVQKKWEDSSWGRKLLVKKRRASLNDFDRFKLMLAKIKRAGL 120
           DIKRVP+KK+LI+A++AADV+ KW  SSWGRKL+VKK RA+LNDFDRFK+MLAKIKRA  
Sbjct: 61  DIKRVPKKKDLIKALEAADVKNKWAKSSWGRKLIVKKTRAALNDFDRFKIMLAKIKRAAG 120

Query: 121 VRQELAKLKKSAS 134
           VRQELAKLKK+A+
Sbjct: 121 VRQELAKLKKTAA 133

[Close]

BLAST of ClCG05G004260.1 vs. Swiss-Prot
Match: RL14_LUMRU (60S ribosomal protein L14 OS=Lumbricus rubellus GN=RPL14 PE=3 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 2.1e-27
Identity = 65/133 (48.87%), Postives = 85/133 (63.91%), Query Frame = 1


Query: 1   MPFKRYVEIGRVALVNYGEDYGKLVVIVDVIDQNRALVDAP--DMVRSQMNFKRLSLTDI 60
           M F+R+VEIGRVA   YG D GKLV IVDVIDQNRALVD P   + R  MNFK L LT++
Sbjct: 1   MSFRRFVEIGRVARAVYGPDQGKLVAIVDVIDQNRALVDGPCTHVARKSMNFKELELTNL 60

Query: 61  KIDIKRVPRKKELIEAMKAADVQKKWEDSSWGRKLLVKKRRASLNDFDRFKLMLAKIKRA 120
           K       +   + +A +  ++ KKWE+S   +K+  K++R +L DF+RFKLM AK  R 
Sbjct: 61  KAKFPHSAKTGVVKKAWEKDEISKKWEESHLAKKIAAKEKRKTLTDFERFKLMKAKQARN 120

Query: 121 GLVRQELAKLKKS 132
            L++ E  KL+K+
Sbjct: 121 RLIKIEFGKLRKA 133

[Close]

BLAST of ClCG05G004260.1 vs. Swiss-Prot
Match: RL14_GRIJA (60S ribosomal protein L14 OS=Griffithsia japonica GN=RPL14 PE=2 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 6.0e-27
Identity = 66/132 (50.00%), Postives = 90/132 (68.18%), Query Frame = 1


Query: 1   MPFKRYVEIGRVALVNYGEDYGKLVVIVDVIDQNRALVDAPD--MVRSQMNFKRLSLTDI 60
           M F R+VE GRVALV+YGE   KLVVIVD++DQNR LVD+P   + R  +N KR++LT I
Sbjct: 1   MTFTRFVEAGRVALVSYGEHLNKLVVIVDILDQNRILVDSPSHGLKRKVINVKRIALTSI 60

Query: 61  KI-DIKRVPRKKELIEAMKAADVQKKWEDSSWGRKLLVKKRRASLNDFDRFKLMLAKIKR 120
           K+ DI R     E+     AA V + +  S WG+KL  +++RA+L+DF RFK+M+A++K+
Sbjct: 61  KVDDIARGAPVAEVKSKYTAAKVDETFAASGWGKKLAKREKRAALDDFGRFKVMVARMKK 120

Query: 121 AGLVRQELAKLK 130
           +  +  ELAKLK
Sbjct: 121 SKAINAELAKLK 132

[Close]

BLAST of ClCG05G004260.1 vs. TrEMBL
Match: A0A0A0L4D3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G134930 PE=4 SV=1)

HSP 1 Score: 256.1 bits (653), Expect = 2.3e-65
Identity = 131/133 (98.50%), Postives = 133/133 (100.00%), Query Frame = 1


Query: 1   MPFKRYVEIGRVALVNYGEDYGKLVVIVDVIDQNRALVDAPDMVRSQMNFKRLSLTDIKI 60
           MPFKRYVEIGRVALVNYGEDYGKLVVIVDVIDQNRALVDAPDMVRSQMNFKRLSLTDIKI
Sbjct: 1   MPFKRYVEIGRVALVNYGEDYGKLVVIVDVIDQNRALVDAPDMVRSQMNFKRLSLTDIKI 60

Query: 61  DIKRVPRKKELIEAMKAADVQKKWEDSSWGRKLLVKKRRASLNDFDRFKLMLAKIKRAGL 120
           DIKRVPRKKEL+EAMKAADVQKKWEDSSWGRKLLVK+RRASLNDFDRFKLMLAKIKRAGL
Sbjct: 61  DIKRVPRKKELMEAMKAADVQKKWEDSSWGRKLLVKQRRASLNDFDRFKLMLAKIKRAGL 120

Query: 121 VRQELAKLKKSAS 134
           VRQELAKLKKSAS
Sbjct: 121 VRQELAKLKKSAS 133

[Close]

BLAST of ClCG05G004260.1 vs. TrEMBL
Match: A0A0A0L725_CUCSA (Csf-1 protein OS=Cucumis sativus GN=Csa_3G134920 PE=4 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 5.6e-64
Identity = 128/133 (96.24%), Postives = 131/133 (98.50%), Query Frame = 1


Query: 1   MPFKRYVEIGRVALVNYGEDYGKLVVIVDVIDQNRALVDAPDMVRSQMNFKRLSLTDIKI 60
           MPFKR+VEIGRVALVNYGEDYGKLVVIVDVIDQNRALVDAPDMVRSQMNFKRLSLTDIKI
Sbjct: 1   MPFKRFVEIGRVALVNYGEDYGKLVVIVDVIDQNRALVDAPDMVRSQMNFKRLSLTDIKI 60

Query: 61  DIKRVPRKKELIEAMKAADVQKKWEDSSWGRKLLVKKRRASLNDFDRFKLMLAKIKRAGL 120
           DIKRVPRKKELIEAMKA DVQKKWEDSSWGRKLLVKKRRA+LNDFDRFKLMLAKIKRAGL
Sbjct: 61  DIKRVPRKKELIEAMKAGDVQKKWEDSSWGRKLLVKKRRAALNDFDRFKLMLAKIKRAGL 120

Query: 121 VRQELAKLKKSAS 134
           VRQEL+KLKKS S
Sbjct: 121 VRQELSKLKKSQS 133

[Close]

BLAST of ClCG05G004260.1 vs. TrEMBL
Match: Q9SXL9_CUCSA (Csf-1 protein (Fragment) OS=Cucumis sativus GN=Csf-1 PE=2 SV=1)

HSP 1 Score: 246.1 bits (627), Expect = 2.4e-62
Identity = 123/131 (93.89%), Postives = 129/131 (98.47%), Query Frame = 1


Query: 1   MPFKRYVEIGRVALVNYGEDYGKLVVIVDVIDQNRALVDAPDMVRSQMNFKRLSLTDIKI 60
           MPFKRYVEIGR+AL+NYGEDYGKLVVIVDVIDQNRALVDAPDM RSQMNFKRLSLTDIKI
Sbjct: 6   MPFKRYVEIGRIALINYGEDYGKLVVIVDVIDQNRALVDAPDMERSQMNFKRLSLTDIKI 65

Query: 61  DIKRVPRKKELIEAMKAADVQKKWEDSSWGRKLLVKKRRASLNDFDRFKLMLAKIKRAGL 120
           DIKRVP+KKELIEAMKA DVQKKWE+SSWGRKL+VKKRRASLNDFDRFKLMLAKIKRAGL
Sbjct: 66  DIKRVPKKKELIEAMKAGDVQKKWENSSWGRKLIVKKRRASLNDFDRFKLMLAKIKRAGL 125

Query: 121 VRQELAKLKKS 132
           VRQELAKLKK+
Sbjct: 126 VRQELAKLKKA 136

[Close]

BLAST of ClCG05G004260.1 vs. TrEMBL
Match: A0A0A0LIH9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G173070 PE=4 SV=1)

HSP 1 Score: 246.1 bits (627), Expect = 2.4e-62
Identity = 123/131 (93.89%), Postives = 129/131 (98.47%), Query Frame = 1


Query: 1   MPFKRYVEIGRVALVNYGEDYGKLVVIVDVIDQNRALVDAPDMVRSQMNFKRLSLTDIKI 60
           MPFKRYVEIGR+AL+NYGEDYGKLVVIVDVIDQNRALVDAPDM RSQMNFKRLSLTDIKI
Sbjct: 1   MPFKRYVEIGRIALINYGEDYGKLVVIVDVIDQNRALVDAPDMERSQMNFKRLSLTDIKI 60

Query: 61  DIKRVPRKKELIEAMKAADVQKKWEDSSWGRKLLVKKRRASLNDFDRFKLMLAKIKRAGL 120
           DIKRVP+KKELIEAMKA DVQKKWE+SSWGRKL+VKKRRASLNDFDRFKLMLAKIKRAGL
Sbjct: 61  DIKRVPKKKELIEAMKAGDVQKKWENSSWGRKLIVKKRRASLNDFDRFKLMLAKIKRAGL 120

Query: 121 VRQELAKLKKS 132
           VRQELAKLKK+
Sbjct: 121 VRQELAKLKKA 131

[Close]

BLAST of ClCG05G004260.1 vs. TrEMBL
Match: M5XZC8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013222mg PE=4 SV=1)

HSP 1 Score: 239.2 bits (609), Expect = 2.9e-60
Identity = 119/133 (89.47%), Postives = 129/133 (96.99%), Query Frame = 1


Query: 1   MPFKRYVEIGRVALVNYGEDYGKLVVIVDVIDQNRALVDAPDMVRSQMNFKRLSLTDIKI 60
           MPFKRYVEIGRVALVNYGEDYGKLVVIVDV+DQNRALVD+PDMVRSQMNFKRLSLTDIKI
Sbjct: 1   MPFKRYVEIGRVALVNYGEDYGKLVVIVDVLDQNRALVDSPDMVRSQMNFKRLSLTDIKI 60

Query: 61  DIKRVPRKKELIEAMKAADVQKKWEDSSWGRKLLVKKRRASLNDFDRFKLMLAKIKRAGL 120
           DIKRVP+KKEL+ AM+AADV+KKWE+SSWGRKL+V+KRRASLNDFDRFKLMLAKIKRAGL
Sbjct: 61  DIKRVPKKKELLAAMEAADVKKKWENSSWGRKLIVQKRRASLNDFDRFKLMLAKIKRAGL 120

Query: 121 VRQELAKLKKSAS 134
           V+ ELAKLKK  S
Sbjct: 121 VKSELAKLKKETS 133

[Close]

BLAST of ClCG05G004260.1 vs. TAIR10
Match: AT4G27090.1 (AT4G27090.1 Ribosomal protein L14)

HSP 1 Score: 219.5 bits (558), Expect = 1.2e-57
Identity = 110/130 (84.62%), Postives = 119/130 (91.54%), Query Frame = 1


Query: 1   MPFKRYVEIGRVALVNYGEDYGKLVVIVDVIDQNRALVDAPDMVRSQMNFKRLSLTDIKI 60
           M FKRYVEIGRVALVNYGED+GKLVVIVDV+DQNRALVDAPDM R QMNFKRLSLTDI I
Sbjct: 1   MGFKRYVEIGRVALVNYGEDHGKLVVIVDVVDQNRALVDAPDMERIQMNFKRLSLTDIVI 60

Query: 61  DIKRVPRKKELIEAMKAADVQKKWEDSSWGRKLLVKKRRASLNDFDRFKLMLAKIKRAGL 120
           DI RVP+KK LIEAM+ ADV+ KWE SSWGRKL+V+KRRA+LNDFDRFK+MLAKIK+AG+
Sbjct: 61  DINRVPKKKALIEAMEKADVKNKWEKSSWGRKLIVQKRRANLNDFDRFKIMLAKIKKAGV 120

Query: 121 VRQELAKLKK 131
           VRQELAKLKK
Sbjct: 121 VRQELAKLKK 130

[Close]

BLAST of ClCG05G004260.1 vs. TAIR10
Match: AT2G20450.1 (AT2G20450.1 Ribosomal protein L14)

HSP 1 Score: 217.6 bits (553), Expect = 4.6e-57
Identity = 109/130 (83.85%), Postives = 118/130 (90.77%), Query Frame = 1


Query: 1   MPFKRYVEIGRVALVNYGEDYGKLVVIVDVIDQNRALVDAPDMVRSQMNFKRLSLTDIKI 60
           M FKR+VEIGRVALVNYGEDYGKLVVIVDV+DQNRALVDAPDM R QMN KRLSLTDI I
Sbjct: 1   MGFKRFVEIGRVALVNYGEDYGKLVVIVDVVDQNRALVDAPDMERIQMNLKRLSLTDIVI 60

Query: 61  DIKRVPRKKELIEAMKAADVQKKWEDSSWGRKLLVKKRRASLNDFDRFKLMLAKIKRAGL 120
           DI RVP+KK LIEAM+ ADV+ KWE SSWGRKL+V+KRRA+LNDFDRFK+MLAKIKRAG+
Sbjct: 61  DINRVPKKKVLIEAMEKADVKNKWEKSSWGRKLIVQKRRAALNDFDRFKIMLAKIKRAGI 120

Query: 121 VRQELAKLKK 131
           VRQELAKLK+
Sbjct: 121 VRQELAKLKR 130

[Close]

BLAST of ClCG05G004260.1 vs. NCBI nr
Match: gi|449432536|ref|XP_004134055.1| (PREDICTED: 60S ribosomal protein L14-2-like [Cucumis sativus])

HSP 1 Score: 256.1 bits (653), Expect = 3.3e-65
Identity = 131/133 (98.50%), Postives = 133/133 (100.00%), Query Frame = 1


Query: 1   MPFKRYVEIGRVALVNYGEDYGKLVVIVDVIDQNRALVDAPDMVRSQMNFKRLSLTDIKI 60
           MPFKRYVEIGRVALVNYGEDYGKLVVIVDVIDQNRALVDAPDMVRSQMNFKRLSLTDIKI
Sbjct: 1   MPFKRYVEIGRVALVNYGEDYGKLVVIVDVIDQNRALVDAPDMVRSQMNFKRLSLTDIKI 60

Query: 61  DIKRVPRKKELIEAMKAADVQKKWEDSSWGRKLLVKKRRASLNDFDRFKLMLAKIKRAGL 120
           DIKRVPRKKEL+EAMKAADVQKKWEDSSWGRKLLVK+RRASLNDFDRFKLMLAKIKRAGL
Sbjct: 61  DIKRVPRKKELMEAMKAADVQKKWEDSSWGRKLLVKQRRASLNDFDRFKLMLAKIKRAGL 120

Query: 121 VRQELAKLKKSAS 134
           VRQELAKLKKSAS
Sbjct: 121 VRQELAKLKKSAS 133

[Close]

BLAST of ClCG05G004260.1 vs. NCBI nr
Match: gi|659076103|ref|XP_008438503.1| (PREDICTED: probable 60S ribosomal protein L14 [Cucumis melo])

HSP 1 Score: 254.6 bits (649), Expect = 9.5e-65
Identity = 130/133 (97.74%), Postives = 133/133 (100.00%), Query Frame = 1


Query: 1   MPFKRYVEIGRVALVNYGEDYGKLVVIVDVIDQNRALVDAPDMVRSQMNFKRLSLTDIKI 60
           MPFKRYVEIGRVALVNYGEDYGKLVVIVDVIDQNRALVDAPDMVRSQ+NFKRLSLTDIKI
Sbjct: 1   MPFKRYVEIGRVALVNYGEDYGKLVVIVDVIDQNRALVDAPDMVRSQINFKRLSLTDIKI 60

Query: 61  DIKRVPRKKELIEAMKAADVQKKWEDSSWGRKLLVKKRRASLNDFDRFKLMLAKIKRAGL 120
           DIKRVPRKKEL+EAMKAADVQKKWEDSSWGRKLLVK+RRASLNDFDRFKLMLAKIKRAGL
Sbjct: 61  DIKRVPRKKELMEAMKAADVQKKWEDSSWGRKLLVKQRRASLNDFDRFKLMLAKIKRAGL 120

Query: 121 VRQELAKLKKSAS 134
           VRQELAKLKKSAS
Sbjct: 121 VRQELAKLKKSAS 133

[Close]

BLAST of ClCG05G004260.1 vs. NCBI nr
Match: gi|449432538|ref|XP_004134056.1| (PREDICTED: 60S ribosomal protein L14-1-like [Cucumis sativus])

HSP 1 Score: 251.5 bits (641), Expect = 8.1e-64
Identity = 128/133 (96.24%), Postives = 131/133 (98.50%), Query Frame = 1


Query: 1   MPFKRYVEIGRVALVNYGEDYGKLVVIVDVIDQNRALVDAPDMVRSQMNFKRLSLTDIKI 60
           MPFKR+VEIGRVALVNYGEDYGKLVVIVDVIDQNRALVDAPDMVRSQMNFKRLSLTDIKI
Sbjct: 1   MPFKRFVEIGRVALVNYGEDYGKLVVIVDVIDQNRALVDAPDMVRSQMNFKRLSLTDIKI 60

Query: 61  DIKRVPRKKELIEAMKAADVQKKWEDSSWGRKLLVKKRRASLNDFDRFKLMLAKIKRAGL 120
           DIKRVPRKKELIEAMKA DVQKKWEDSSWGRKLLVKKRRA+LNDFDRFKLMLAKIKRAGL
Sbjct: 61  DIKRVPRKKELIEAMKAGDVQKKWEDSSWGRKLLVKKRRAALNDFDRFKLMLAKIKRAGL 120

Query: 121 VRQELAKLKKSAS 134
           VRQEL+KLKKS S
Sbjct: 121 VRQELSKLKKSQS 133

[Close]

BLAST of ClCG05G004260.1 vs. NCBI nr
Match: gi|659076099|ref|XP_008438500.1| (PREDICTED: 60S ribosomal protein L14-1-like [Cucumis melo])

HSP 1 Score: 251.5 bits (641), Expect = 8.1e-64
Identity = 128/133 (96.24%), Postives = 131/133 (98.50%), Query Frame = 1


Query: 1   MPFKRYVEIGRVALVNYGEDYGKLVVIVDVIDQNRALVDAPDMVRSQMNFKRLSLTDIKI 60
           MPFKR+VEIGRVALVNYGEDYGKLVVIVDVIDQNRALVDAPDMVRSQMNFKRLSLTDIKI
Sbjct: 68  MPFKRFVEIGRVALVNYGEDYGKLVVIVDVIDQNRALVDAPDMVRSQMNFKRLSLTDIKI 127

Query: 61  DIKRVPRKKELIEAMKAADVQKKWEDSSWGRKLLVKKRRASLNDFDRFKLMLAKIKRAGL 120
           DIKRVPRKKELIEAMKA DVQKKWEDSSWGRKLLVKKRRA+LNDFDRFKLMLAKIKRAGL
Sbjct: 128 DIKRVPRKKELIEAMKAGDVQKKWEDSSWGRKLLVKKRRAALNDFDRFKLMLAKIKRAGL 187

Query: 121 VRQELAKLKKSAS 134
           VRQEL+KLKKS S
Sbjct: 188 VRQELSKLKKSQS 200

[Close]

BLAST of ClCG05G004260.1 vs. NCBI nr
Match: gi|5762251|dbj|BAA83469.1| (Csf-1 [Cucumis sativus])

HSP 1 Score: 246.1 bits (627), Expect = 3.4e-62
Identity = 123/131 (93.89%), Postives = 129/131 (98.47%), Query Frame = 1


Query: 1   MPFKRYVEIGRVALVNYGEDYGKLVVIVDVIDQNRALVDAPDMVRSQMNFKRLSLTDIKI 60
           MPFKRYVEIGR+AL+NYGEDYGKLVVIVDVIDQNRALVDAPDM RSQMNFKRLSLTDIKI
Sbjct: 6   MPFKRYVEIGRIALINYGEDYGKLVVIVDVIDQNRALVDAPDMERSQMNFKRLSLTDIKI 65

Query: 61  DIKRVPRKKELIEAMKAADVQKKWEDSSWGRKLLVKKRRASLNDFDRFKLMLAKIKRAGL 120
           DIKRVP+KKELIEAMKA DVQKKWE+SSWGRKL+VKKRRASLNDFDRFKLMLAKIKRAGL
Sbjct: 66  DIKRVPKKKELIEAMKAGDVQKKWENSSWGRKLIVKKRRASLNDFDRFKLMLAKIKRAGL 125

Query: 121 VRQELAKLKKS 132
           VRQELAKLKK+
Sbjct: 126 VRQELAKLKKA 136

The following BLAST results are available for this feature:

BLAST of ClCG05G004260.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RL142_ARATH	2.1e-56	84.62	60S ribosomal protein L14-2 OS=Arabidopsis thaliana GN=RPL14B PE=2 SV=1	[more]
RL141_ARATH	8.1e-56	83.85	60S ribosomal protein L14-1 OS=Arabidopsis thaliana GN=RPL14A PE=2 SV=1	[more]
RL14_PEA	1.1e-55	80.45	Probable 60S ribosomal protein L14 OS=Pisum sativum PE=2 SV=1	[more]
RL14_LUMRU	2.1e-27	48.87	60S ribosomal protein L14 OS=Lumbricus rubellus GN=RPL14 PE=3 SV=1	[more]
RL14_GRIJA	6.0e-27	50.00	60S ribosomal protein L14 OS=Griffithsia japonica GN=RPL14 PE=2 SV=1	[more]

BLAST of ClCG05G004260.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L4D3_CUCSA	2.3e-65	98.50	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G134930 PE=4 SV=1	[more]
A0A0A0L725_CUCSA	5.6e-64	96.24	Csf-1 protein OS=Cucumis sativus GN=Csa_3G134920 PE=4 SV=1	[more]
Q9SXL9_CUCSA	2.4e-62	93.89	Csf-1 protein (Fragment) OS=Cucumis sativus GN=Csf-1 PE=2 SV=1	[more]
A0A0A0LIH9_CUCSA	2.4e-62	93.89	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G173070 PE=4 SV=1	[more]
M5XZC8_PRUPE	2.9e-60	89.47	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013222mg PE=4 SV=1	[more]

BLAST of ClCG05G004260.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G27090.1	1.2e-57	84.62	Ribosomal protein L14	[more]
AT2G20450.1	4.6e-57	83.85	Ribosomal protein L14	[more]

BLAST of ClCG05G004260.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449432536\|ref\|XP_004134055.1\|	3.3e-65	98.50	PREDICTED: 60S ribosomal protein L14-2-like [Cucumis sativus]	[more]
gi\|659076103\|ref\|XP_008438503.1\|	9.5e-65	97.74	PREDICTED: probable 60S ribosomal protein L14 [Cucumis melo]	[more]
gi\|449432538\|ref\|XP_004134056.1\|	8.1e-64	96.24	PREDICTED: 60S ribosomal protein L14-1-like [Cucumis sativus]	[more]
gi\|659076099\|ref\|XP_008438500.1\|	8.1e-64	96.24	PREDICTED: 60S ribosomal protein L14-1-like [Cucumis melo]	[more]
gi\|5762251\|dbj\|BAA83469.1\|	3.4e-62	93.89	Csf-1 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR002784	Ribosomal_L14e_dom
IPR008991	Translation_prot_SH3-like_sf
IPR014722	Rib_L2_dom2

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
biological_process	GO:0042254	ribosome biogenesis
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
ClCG05G004260	ClCG05G004260	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
ClCG05G004260.1	ClCG05G004260.1-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG05G004260.1.five_prime_UTR1	ClCG05G004260.1.five_prime_UTR1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG05G004260.1.cds1	ClCG05G004260.1.cds1	CDS
ClCG05G004260.1.cds2	ClCG05G004260.1.cds2	CDS
ClCG05G004260.1.cds3	ClCG05G004260.1.cds3	CDS
ClCG05G004260.1.cds4	ClCG05G004260.1.cds4	CDS
ClCG05G004260.1.cds5	ClCG05G004260.1.cds5	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG05G004260.1.three_prime_UTR1	ClCG05G004260.1.three_prime_UTR1	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002784	Ribosomal protein L14e domain	PFAM	PF01929	Ribosomal_L14e	coord: 45..117 score: 7.5
IPR008991	Translation protein SH3-like domain	unknown	SSF50104	Translation proteins SH3-like domain	coord: 5..93 score: 2.41
IPR014722	Ribosomal protein L2 domain 2	GENE3D	G3DSA:2.30.30.30		coord: 4..85 score: 1.2
None	No IPR available	PANTHER	PTHR11127	60S RIBOSOMAL PROTEIN L14	coord: 2..130 score: 2.8
None	No IPR available	PANTHER	PTHR11127:SF3	SUBFAMILY NOT NAMED	coord: 2..130 score: 2.8