ClCG05G003760.1 (mRNA) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG05G003760.1
Type	mRNA
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Unknown protein
Location	CG_Chr05 : 3518788 .. 3519279 (+)
Sequence length	333

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTGATTTTTTTTTATTTTTTATTTTTTTTTTTTTAAGTTTGGATATTTTTTTAACTTTTAAAAATTCAAATTTTCTTTTTCTTTTTTTTTTTTTACACATATTACAAATATGGGGCATTTTTTTTTTAATTAATTTATTATTATTATTGTAAACAAAAACAGACACATTTCTTCGATTCTAATTATCTGCTGCAGATTGCAGCAGTTGCTCCCTCCGGCGCCGGAAAGCCGCCGTCATTAGGTTCCAATCCGGCAGATTATCTCTGATCACCGGCGCTTCCCTGAATCTTCCAGCCCAAGCATACACCCGAGGGAACTCATCGGCGTCCAACACTTTCACTCCCGTCACTTGTTCAATCATTCCCAACCAATACGCAATCCCGCCGAACGCCAAATCCGCCATTCCGATCTCATCTCCGCCGAAAAATTTCCTTTTTCCGCCGTCGAATCCCCATTCCTCGACGGTTCTCAGCATCTCCAAGCTCTGA

mRNA sequence

ATGTTTGATTTTTTTTTATTTTTTATTTTTTTTTTTTTAAATTGCAGCAGTTGCTCCCTCCGGCGCCGGAAAGCCGCCGTCATTAGGTTCCAATCCGGCAGATTATCTCTGATCACCGGCGCTTCCCTGAATCTTCCAGCCCAAGCATACACCCGAGGGAACTCATCGGCGTCCAACACTTTCACTCCCGTCACTTGTTCAATCATTCCCAACCAATACGCAATCCCGCCGAACGCCAAATCCGCCATTCCGATCTCATCTCCGCCGAAAAATTTCCTTTTTCCGCCGTCGAATCCCCATTCCTCGACGGTTCTCAGCATCTCCAAGCTCTGA

Coding sequence (CDS)

ATGTTTGATTTTTTTTTATTTTTTATTTTTTTTTTTTTAAATTGCAGCAGTTGCTCCCTCCGGCGCCGGAAAGCCGCCGTCATTAGGTTCCAATCCGGCAGATTATCTCTGATCACCGGCGCTTCCCTGAATCTTCCAGCCCAAGCATACACCCGAGGGAACTCATCGGCGTCCAACACTTTCACTCCCGTCACTTGTTCAATCATTCCCAACCAATACGCAATCCCGCCGAACGCCAAATCCGCCATTCCGATCTCATCTCCGCCGAAAAATTTCCTTTTTCCGCCGTCGAATCCCCATTCCTCGACGGTTCTCAGCATCTCCAAGCTCTGA

Protein sequence

MFDFFLFFIFFFLNCSSCSLRRRKAAVIRFQSGRLSLITGASLNLPAQAYTRGNSSASNTFTPVTCSIIPNQYAIPPNAKSAIPISSPPKNFLFPPSNPHSSTVLSISKL

Homology

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BLAST of ClCG05G003760.1 vs. NCBI nr
Match: gi|297744260|emb|CBI37230.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 71.2 bits (173), Expect = 1.2e-09
Identity = 42/82 (51.22%), Postives = 50/82 (60.98%), Query Frame = 1


Query: 27  VIRFQSGRLSLITGASLNLPAQAYTRGNSSASNTFTPVTCSIIPNQYAIPPNAKSAIPIS 86
           +I   SGR SLITG +L     A  RGN S+S +FTP   S++ +  AI P A SA PIS
Sbjct: 17  LISLWSGRFSLITGTALKFSIHACKRGNLSSSISFTPTASSMVLSHPAIHPKAMSANPIS 76

Query: 87  SPPKNFLFPPSNPHSSTVLSIS 109
           SPPKNF  P   P SS +LS S
Sbjct: 77  SPPKNFFSP--RPCSSMILSSS 96

The following BLAST results are available for this feature:

BLAST of ClCG05G003760.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|297744260\|emb\|CBI37230.3\|	1.2e-09	51.22	unnamed protein product [Vitis vinifera]	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
ClCG05G003760	ClCG05G003760	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
ClCG05G003760.1	ClCG05G003760.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG05G003760.1.cds1	ClCG05G003760.1.cds1	CDS
ClCG05G003760.1.cds2	ClCG05G003760.1.cds2	CDS