ClCG05G003760 (gene) Watermelon (Charleston Gray)

Overview
NameClCG05G003760
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionUnknown protein
LocationCG_Chr05 : 3518788 .. 3519279 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTGATTTTTTTTTATTTTTTATTTTTTTTTTTTTAAGTTTGGATATTTTTTTAACTTTTAAAAATTCAAATTTTCTTTTTCTTTTTTTTTTTTTACACATATTACAAATATGGGGCATTTTTTTTTTAATTAATTTATTATTATTATTGTAAACAAAAACAGACACATTTCTTCGATTCTAATTATCTGCTGCAGATTGCAGCAGTTGCTCCCTCCGGCGCCGGAAAGCCGCCGTCATTAGGTTCCAATCCGGCAGATTATCTCTGATCACCGGCGCTTCCCTGAATCTTCCAGCCCAAGCATACACCCGAGGGAACTCATCGGCGTCCAACACTTTCACTCCCGTCACTTGTTCAATCATTCCCAACCAATACGCAATCCCGCCGAACGCCAAATCCGCCATTCCGATCTCATCTCCGCCGAAAAATTTCCTTTTTCCGCCGTCGAATCCCCATTCCTCGACGGTTCTCAGCATCTCCAAGCTCTGA

mRNA sequence

ATGTTTGATTTTTTTTTATTTTTTATTTTTTTTTTTTTAAATTGCAGCAGTTGCTCCCTCCGGCGCCGGAAAGCCGCCGTCATTAGGTTCCAATCCGGCAGATTATCTCTGATCACCGGCGCTTCCCTGAATCTTCCAGCCCAAGCATACACCCGAGGGAACTCATCGGCGTCCAACACTTTCACTCCCGTCACTTGTTCAATCATTCCCAACCAATACGCAATCCCGCCGAACGCCAAATCCGCCATTCCGATCTCATCTCCGCCGAAAAATTTCCTTTTTCCGCCGTCGAATCCCCATTCCTCGACGGTTCTCAGCATCTCCAAGCTCTGA

Coding sequence (CDS)

ATGTTTGATTTTTTTTTATTTTTTATTTTTTTTTTTTTAAATTGCAGCAGTTGCTCCCTCCGGCGCCGGAAAGCCGCCGTCATTAGGTTCCAATCCGGCAGATTATCTCTGATCACCGGCGCTTCCCTGAATCTTCCAGCCCAAGCATACACCCGAGGGAACTCATCGGCGTCCAACACTTTCACTCCCGTCACTTGTTCAATCATTCCCAACCAATACGCAATCCCGCCGAACGCCAAATCCGCCATTCCGATCTCATCTCCGCCGAAAAATTTCCTTTTTCCGCCGTCGAATCCCCATTCCTCGACGGTTCTCAGCATCTCCAAGCTCTGA

Protein sequence

MFDFFLFFIFFFLNCSSCSLRRRKAAVIRFQSGRLSLITGASLNLPAQAYTRGNSSASNTFTPVTCSIIPNQYAIPPNAKSAIPISSPPKNFLFPPSNPHSSTVLSISKL
Homology
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BLAST of ClCG05G003760 vs. NCBI nr
Match: gi|297744260|emb|CBI37230.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 71.2 bits (173), Expect = 1.2e-09
Identity = 42/82 (51.22%), Postives = 50/82 (60.98%), Query Frame = 1 

Query: 27  VIRFQSGRLSLITGASLNLPAQAYTRGNSSASNTFTPVTCSIIPNQYAIPPNAKSAIPIS 86
           +I   SGR SLITG +L     A  RGN S+S +FTP   S++ +  AI P A SA PIS
Sbjct: 17  LISLWSGRFSLITGTALKFSIHACKRGNLSSSISFTPTASSMVLSHPAIHPKAMSANPIS 76

Query: 87  SPPKNFLFPPSNPHSSTVLSIS 109
           SPPKNF  P   P SS +LS S
Sbjct: 77  SPPKNFFSP--RPCSSMILSSS 96

The following BLAST results are available for this feature:
BLAST of ClCG05G003760 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|297744260|emb|CBI37230.3|1.2e-0951.22unnamed protein product [Vitis vinifera][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG05G003760.1ClCG05G003760.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
ClCG05G003760Cucsa.256010Cucumber (Gy14) v1cgywcgB451
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG05G003760Melon (DHL92) v3.6.1medwcgB376
ClCG05G003760Melon (DHL92) v3.6.1medwcgB416
ClCG05G003760Silver-seed gourdcarwcgB0220
ClCG05G003760Silver-seed gourdcarwcgB0226
ClCG05G003760Silver-seed gourdcarwcgB0757
ClCG05G003760Silver-seed gourdcarwcgB0935
ClCG05G003760Silver-seed gourdcarwcgB1045
ClCG05G003760Cucumber (Chinese Long) v3cucwcgB148
ClCG05G003760Cucumber (Chinese Long) v3cucwcgB225
ClCG05G003760Cucumber (Chinese Long) v3cucwcgB246
ClCG05G003760Watermelon (97103) v2wcgwmbB229
ClCG05G003760Watermelon (97103) v2wcgwmbB237
ClCG05G003760Watermelon (97103) v2wcgwmbB242
ClCG05G003760Wax gourdwcgwgoB412
ClCG05G003760Wax gourdwcgwgoB434
ClCG05G003760Wax gourdwcgwgoB447
ClCG05G003760Watermelon (Charleston Gray)wcgwcgB160
ClCG05G003760Watermelon (Charleston Gray)wcgwcgB164
ClCG05G003760Cucumber (Gy14) v1cgywcgB238
ClCG05G003760Cucurbita maxima (Rimu)cmawcgB233
ClCG05G003760Cucurbita maxima (Rimu)cmawcgB319
ClCG05G003760Cucurbita maxima (Rimu)cmawcgB464
ClCG05G003760Cucurbita maxima (Rimu)cmawcgB737
ClCG05G003760Cucurbita maxima (Rimu)cmawcgB795
ClCG05G003760Cucurbita moschata (Rifu)cmowcgB219
ClCG05G003760Cucurbita moschata (Rifu)cmowcgB315
ClCG05G003760Cucurbita moschata (Rifu)cmowcgB463
ClCG05G003760Cucurbita moschata (Rifu)cmowcgB743
ClCG05G003760Cucurbita moschata (Rifu)cmowcgB792
ClCG05G003760Wild cucumber (PI 183967)cpiwcgB141
ClCG05G003760Wild cucumber (PI 183967)cpiwcgB226
ClCG05G003760Wild cucumber (PI 183967)cpiwcgB247
ClCG05G003760Cucumber (Chinese Long) v2cuwcgB136
ClCG05G003760Cucumber (Chinese Long) v2cuwcgB222
ClCG05G003760Cucumber (Chinese Long) v2cuwcgB240
ClCG05G003760Melon (DHL92) v3.5.1mewcgB335
ClCG05G003760Melon (DHL92) v3.5.1mewcgB385
ClCG05G003760Melon (DHL92) v3.5.1mewcgB427
ClCG05G003760Watermelon (97103) v1wcgwmB282
ClCG05G003760Watermelon (97103) v1wcgwmB286
ClCG05G003760Watermelon (97103) v1wcgwmB311
ClCG05G003760Cucurbita pepo (Zucchini)cpewcgB138
ClCG05G003760Cucurbita pepo (Zucchini)cpewcgB293
ClCG05G003760Cucurbita pepo (Zucchini)cpewcgB559
ClCG05G003760Cucurbita pepo (Zucchini)cpewcgB679
ClCG05G003760Cucurbita pepo (Zucchini)cpewcgB787
ClCG05G003760Bottle gourd (USVL1VR-Ls)lsiwcgB016
ClCG05G003760Bottle gourd (USVL1VR-Ls)lsiwcgB335
ClCG05G003760Bottle gourd (USVL1VR-Ls)lsiwcgB337
ClCG05G003760Cucumber (Gy14) v2cgybwcgB129
ClCG05G003760Cucumber (Gy14) v2cgybwcgB203
ClCG05G003760Cucumber (Gy14) v2cgybwcgB222