ClCG05G003360.1 (mRNA) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG05G003360.1
Type	mRNA
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Unknown protein
Location	CG_Chr05 : 3189685 .. 3191776 (-)
Sequence length	676

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAAGTCGATAAGCAGCTGCATCTTCCATATTTTCCGGACCTCCGCTTCGGCCGGAGGTCGGACGACCTCGCCGACGACGGACTCTGCTGCCGGAATCTAGCGGTTTCGATCGATTTCAGTTCTATCACCGTTGAAGGCGAAGGCGATTGGAATAATCTGTTTGGAAATTTCTGGTTCGATATCTTCACTTGGTATGTACTGTCTTTTTGTCCGACGCATTTACAATACCTCACATTCTCGAGCATTTTTTTCCGTTTCTTTCATATTTCTATTCGTGCATTTTGTGAATTTTTCTTCCATGATTTATGCCGCTCTCAGCTATTCTGTACAAATAGTGCGACATTTGCGACTATCCAGTTTTCATAATCTGTGGGTTTTAACACGCTGGTCCGGTCTTGGGTTCTTCATCACAAATTTGGTTTAGATTCCTATTTCATTGTCGAGATTTACTGGATGTGAAATAGAGAGAAACTGTAATGTCCTGCAAGGTGGAGGTTGATTTCTGCCTTTTATGGTGGAAAATGTTTGGGAATGTGGTATAGAACAAGCACGGTAGTATGAACAATGATTGTAAATAGTAATTGATCCTCATCGTGGTGCAATTCGAAGTCCAAGCCCTCAATATGATTCCAACCTCTCGTTTCAATCATGTTAATCTGGCTTCCTTGGACACATTTGCCTAGTTTCACAAGCTTCTTGCTTGCCTAGAGTCAATAGACTCGTAGAAAAAATGAGCAATGAAACGAAGTACATAATATGAAATAATACAAATGCATAATATAAATACAAATTAATATTAGCATCAAGTGAATATTTGGATATAATTAAGTTTGTTATTAATAAAATTATTTTGATGCGATTTACTTTCAAGTGGTAATGAAGGGAAAAGGATTTTTTTAGTCCAAGGTAGTAGTAAAGAAGAGGACACAAAAAGGCAACTGGGAAGCAACAAGAAAGAGACTTAGATGTGATTTGACCAAAGGCGATTGCTTAGGAAGATACTCAACATAGAAAACCGTAAATAAATATATATTTTCGACCTAGAAGTCAGAAGTTCGGATCTTCCTAAGCCCACGTGTTGTTGAACTAACGAACAAGACAACCACTTTTGCTTGTATTGTGCCTTTGTGTCTTATTTTGCGAGAAGATCTTTTGTCTTGTTTCCTTCATGCGTTCAGTTATCTTTCTCTTGTCTTTGTGCATGCTTTGCATTTGGGGTCCAAAAAACTTTCAGGCCTCAATGTGCCTTGTGCTGTGAAGAACAGGAATTCAAGAGTTTTAATAAATGAAGCAATCGGGGCTTTCTTTTACTTCTCCATGTGCCTTGTGTATTATGAATCTCATCACTTGGGTTTGCACTTGTATTTTTGCTATGCATTTAAGTCTCAAAGAGCTGTTGTGCCTTGTACTTTATACAACATGGATTTGCAATTTTTGCCTTATAAGCTCTGAGGAAACATGACATGAAGTAAATCTAGACTAAACAGTCACCCGACAAAGACTTGAGAGTTTATCCAAATGTAGCAAGTCTATTTTTGTTATAATGCATGGCTTTCTAGGCTTCTAACTTTATATGTATTGATATATAAATTACTAGCGGTTTTATTGCTGCATGTCTGATTCACTCCCCATGAATATATTTCTCCTCATATCCTTACTCCATGGTTCTTAATTTCATTTCTTAAGTTTATTTGAGGAAATGGATGGTTTTCTTTCATATCTAAGATCACCCTCATTACACCGTATAAAGTTCTTGAAATAAAATTCAGTTCTGGACAAGTTTATTTAACAACTTATTGGATCTGATGTTATGCTTCTCCTTATTCTTGGGCAGAGCAATGGCCAACCATAGATAAAATCAGAGCACGAGCCATCTTTGGAAATCCTGGCTAGGTTTATCCCGAATGTTCCTGCTTCTGAAAAGTGACACTTTTTGGGATTCTGGCGGATCTGTGGCTGTTGATGTTGGCACTCTCGTGAGTTTCTCTCTCCTAAATGATTGTTCATCCAACAAACTACCATGGACTAACCTAATGGTCAATAAGGACCGTATAAACAATAAAGAGCTTAGAGGGAATGATTTCAAGCA

mRNA sequence

ATGCAAGTCGATAAGCAGCTGCATCTTCCATATTTTCCGGACCTCCGCTTCGGCCGGAGGTCGGACGACCTCGCCGACGACGGACTCTGCTGCCGGAATCTAGCGGTTTCGATCGATTTCAGTTCTATCACCGTTGAAGGCGAAGGCGATTGGAATAATCTGTTTGGAAATTTCTGGTTCGATATCTTCACTTGTTATCTTTCTCTTGTCTTTGTGCATGCTTTGCATTTGGGGTCCAAAAAACTTTCAGGCCTCAATGTGCCTTGTGCTGTGAAGAACAGGAATTCAAGAGTTTTAATAAATGAAGCAATCGGGGCTTTCTTTTACTTCTCCATGTGCCTTGTGTATTATGAATCTCATCACTTGGGTTTGCACTTGTATTTTTGCTATGCATTTAAGTCTCAAAGAGCTGTTGTGCCTTAGCAATGGCCAACCATAGATAAAATCAGAGCACGAGCCATCTTTGGAAATCCTGGCTAGGTTTATCCCGAATGTTCCTGCTTCTGAAAAGTGACACTTTTTGGGATTCTGGCGGATCTGTGGCTGTTGATGTTGGCACTCTCGTGAGTTTCTCTCTCCTAAATGATTGTTCATCCAACAAACTACCATGGACTAACCTAATGGTCAATAAGGACCGTATAAACAATAAAGAGCTTAGAGGGAATGATTTCAAGCA

Coding sequence (CDS)

ATGCAAGTCGATAAGCAGCTGCATCTTCCATATTTTCCGGACCTCCGCTTCGGCCGGAGGTCGGACGACCTCGCCGACGACGGACTCTGCTGCCGGAATCTAGCGGTTTCGATCGATTTCAGTTCTATCACCGTTGAAGGCGAAGGCGATTGGAATAATCTGTTTGGAAATTTCTGGTTCGATATCTTCACTTGTTATCTTTCTCTTGTCTTTGTGCATGCTTTGCATTTGGGGTCCAAAAAACTTTCAGGCCTCAATGTGCCTTGTGCTGTGAAGAACAGGAATTCAAGAGTTTTAATAAATGAAGCAATCGGGGCTTTCTTTTACTTCTCCATGTGCCTTGTGTATTATGAATCTCATCACTTGGGTTTGCACTTGTATTTTTGCTATGCATTTAAGTCTCAAAGAGCTGTTGTGCCTTAG

Protein sequence

MQVDKQLHLPYFPDLRFGRRSDDLADDGLCCRNLAVSIDFSSITVEGEGDWNNLFGNFWFDIFTCYLSLVFVHALHLGSKKLSGLNVPCAVKNRNSRVLINEAIGAFFYFSMCLVYYESHHLGLHLYFCYAFKSQRAVVP

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
ClCG05G003360	ClCG05G003360	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
ClCG05G003360.1	ClCG05G003360.1-protein	polypeptide

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG05G003360.1.three_prime_UTR1	ClCG05G003360.1.three_prime_UTR1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG05G003360.1.cds3	ClCG05G003360.1.cds3	CDS
ClCG05G003360.1.cds2	ClCG05G003360.1.cds2	CDS
ClCG05G003360.1.cds1	ClCG05G003360.1.cds1	CDS