ClCG05G002190.1 (mRNA) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG05G002190.1
Type	mRNA
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	LOB domain protein 18
Location	CG_Chr05 : 2110702 .. 2111742 (-)
Sequence length	726

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGCTTTGCTTAGCTTTTCCTGAAAGAACGCAAGCAAGCAAGGCTGAGATGAGCTCGAGGCGCAGCCGCGGAAGTTGCCCAGAAGGCAAAGGTGGTGGACCGTGTGGGGCGTGCAAGTTTCTGCGGAGGAAGTGTATGCCAGAGTGTATATTTGCACCCTACTTCGACTCCGAACAAGGTACAACTCATTTTGCAGCTGTGCACAAGGTGTTCGGAGCCAGCAATGTGTCGAAGATGCTTCTACATATTCCTGAACACAAACGGCTCGACGCAGCTATAACTATATGTTACGAGGCACAAGCTCGAGTCAGAGAGCCAGTTTTTGGCTGTGTTGCTCATATCTTTGCCCTCCAACAACAGGTAAAAACAAATAACTCCATCTAACAATTTCTGATTTTTGGTTACTGAAAGGTCAAGCTTATAAAAATTCTAAATGTTTCCTTAGAAAAGATGAAAACCCACACAATCTTTAAAAACTAAATGATCATCAAATGGAGCCCTCAATTACTTCTATAATATCCATTTGAGACTTGTGATCATCATCATACATCATCATACATCTTCATATGCGAAACAGACTTGTATACATTATTTAGTTTTCAATTTTAGTTTCACATATAATTTGTATATCAATATATAAATGCCAAAATTTGAGTGATATACATTAATTTTTAGGCTGCAAGGTTGCAAGTAGAGATCTCGTATTTGCAAGCGCACCTAGCAACATCTGAGCTTCCAAGACCCGCACCCAATCTACAGGCACAGCCACCAGCTCTAGTCAAGAAGCCAACTCTATCCTCAATTGTAAACCTTCCATCAGATTGCCCTTCTTTTCCTGCTGAATCAGATCTTTCTCGACTTCTCGATCCCATCGAGCAAGCTTCACGGCCGAAGTTGCAATCTCCCTTGGAATTGTCCCAAATTGGAAGCAACAGTTTCCCATCCATGAGCAGCATTGATCAACAAATCGTCCAAAAACAACTGGCCTCAATGCGACACATTGGTGCCTCGCTATTTCCGTGCGTCCCTAAAGGAGCCTAA

mRNA sequence

AAGCTTTGCTTAGCTTTTCCTGAAAGAACGCAAGCAAGCAAGGCTGAGATGAGCTCGAGGCGCAGCCGCGGAAGTTGCCCAGAAGGCAAAGGTGGTGGACCGTGTGGGGCGTGCAAGTTTCTGCGGAGGAAGTGTATGCCAGAGTGTATATTTGCACCCTACTTCGACTCCGAACAAGGTACAACTCATTTTGCAGCTGTGCACAAGGTGTTCGGAGCCAGCAATGTGTCGAAGATGCTTCTACATATTCCTGAACACAAACGGCTCGACGCAGCTATAACTATATGTTACGAGGCACAAGCTCGAGTCAGAGAGCCAGTTTTTGGCTGTGTTGCTCATATCTTTGCCCTCCAACAACAGGCTGCAAGGTTGCAAGTAGAGATCTCGTATTTGCAAGCGCACCTAGCAACATCTGAGCTTCCAAGACCCGCACCCAATCTACAGGCACAGCCACCAGCTCTAGTCAAGAAGCCAACTCTATCCTCAATTGTAAACCTTCCATCAGATTGCCCTTCTTTTCCTGCTGAATCAGATCTTTCTCGACTTCTCGATCCCATCGAGCAAGCTTCACGGCCGAAGTTGCAATCTCCCTTGGAATTGTCCCAAATTGGAAGCAACAGTTTCCCATCCATGAGCAGCATTGATCAACAAATCGTCCAAAAACAACTGGCCTCAATGCGACACATTGGTGCCTCGCTATTTCCGTGCGTCCCTAAAGGAGCCTAA

Coding sequence (CDS)

AAGCTTTGCTTAGCTTTTCCTGAAAGAACGCAAGCAAGCAAGGCTGAGATGAGCTCGAGGCGCAGCCGCGGAAGTTGCCCAGAAGGCAAAGGTGGTGGACCGTGTGGGGCGTGCAAGTTTCTGCGGAGGAAGTGTATGCCAGAGTGTATATTTGCACCCTACTTCGACTCCGAACAAGGTACAACTCATTTTGCAGCTGTGCACAAGGTGTTCGGAGCCAGCAATGTGTCGAAGATGCTTCTACATATTCCTGAACACAAACGGCTCGACGCAGCTATAACTATATGTTACGAGGCACAAGCTCGAGTCAGAGAGCCAGTTTTTGGCTGTGTTGCTCATATCTTTGCCCTCCAACAACAGGCTGCAAGGTTGCAAGTAGAGATCTCGTATTTGCAAGCGCACCTAGCAACATCTGAGCTTCCAAGACCCGCACCCAATCTACAGGCACAGCCACCAGCTCTAGTCAAGAAGCCAACTCTATCCTCAATTGTAAACCTTCCATCAGATTGCCCTTCTTTTCCTGCTGAATCAGATCTTTCTCGACTTCTCGATCCCATCGAGCAAGCTTCACGGCCGAAGTTGCAATCTCCCTTGGAATTGTCCCAAATTGGAAGCAACAGTTTCCCATCCATGAGCAGCATTGATCAACAAATCGTCCAAAAACAACTGGCCTCAATGCGACACATTGGTGCCTCGCTATTTCCGTGCGTCCCTAAAGGAGCCTAA

Protein sequence

KLCLAFPERTQASKAEMSSRRSRGSCPEGKGGGPCGACKFLRRKCMPECIFAPYFDSEQGTTHFAAVHKVFGASNVSKMLLHIPEHKRLDAAITICYEAQARVREPVFGCVAHIFALQQQAARLQVEISYLQAHLATSELPRPAPNLQAQPPALVKKPTLSSIVNLPSDCPSFPAESDLSRLLDPIEQASRPKLQSPLELSQIGSNSFPSMSSIDQQIVQKQLASMRHIGASLFPCVPKGA

Homology

[Close]

BLAST of ClCG05G002190.1 vs. Swiss-Prot
Match: LBD18_ARATH (LOB domain-containing protein 18 OS=Arabidopsis thaliana GN=LBD18 PE=1 SV=2)

HSP 1 Score: 218.4 bits (555), Expect = 8.6e-56
Identity = 107/171 (62.57%), Postives = 124/171 (72.51%), Query Frame = 1


Query: 24  GSCPEGKGGGPCGACKFLRRKCMPECIFAPYFDSEQGTTHFAAVHKVFGASNVSKMLLHI 83
           G    G GGGPCGACKFLRRKC+P CIFAPYFDSEQG+ +FAAVHKVFGASNVSK+LLHI
Sbjct: 27  GGSSGGGGGGPCGACKFLRRKCVPGCIFAPYFDSEQGSAYFAAVHKVFGASNVSKLLLHI 86

Query: 84  PEHKRLDAAITICYEAQARVREPVFGCVAHIFALQQQAARLQVEISYLQAHLATSELP-- 143
           P H+R DA +TICYEAQAR+R+P++GCVAHIFALQQQ   LQ E+SYLQAHLA+ ELP  
Sbjct: 87  PVHRRSDAVVTICYEAQARIRDPIYGCVAHIFALQQQVVNLQAEVSYLQAHLASLELPQP 146

Query: 144 --RPAPNLQAQPPALVKKPTLSSIVNLPSDCPSFPAESDLSRLLDPIEQAS 191
             RP P  Q QP      P L +I +LP+     P+  DL+ + D    +S
Sbjct: 147 QTRPQPMPQPQPLFFTPPPPL-AITDLPASVSPLPSTYDLASIFDQTTSSS 196

[Close]

BLAST of ClCG05G002190.1 vs. Swiss-Prot
Match: LBD30_ARATH (LOB domain-containing protein 30 OS=Arabidopsis thaliana GN=LBD30 PE=2 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 7.5e-52
Identity = 104/177 (58.76%), Postives = 125/177 (70.62%), Query Frame = 1


Query: 25  SCPEGKGGGPCGACKFLRRKCMPECIFAPYFDSEQGTTHFAAVHKVFGASNVSKMLLHIP 84
           S   G GGGPCGACKFLRRKC+  CIFAPYFDSEQG  HFAAVHKVFGASNVSK+L H+P
Sbjct: 8   SSSSGGGGGPCGACKFLRRKCVAGCIFAPYFDSEQGAAHFAAVHKVFGASNVSKLLHHVP 67

Query: 85  EHKRLDAAITICYEAQARVREPVFGCVAHIFALQQQAARLQVEISYLQAHLATSELPRPA 144
           EHKR DA ++IC+EAQAR+R+P++GCV+HI +LQQQ   LQ E+SYLQAHLAT ELP+P 
Sbjct: 68  EHKRPDAVVSICFEAQARLRDPIYGCVSHIVSLQQQVVSLQTELSYLQAHLATLELPQP- 127

Query: 145 PNLQAQPPALVKKPTLS----SIVNLPSDCPSFPAESDLSRLLDPIEQASRPKLQSP 198
                QPP +    + S    SI +LP+  PS     DLS + +P+  ++    Q P
Sbjct: 128 -----QPPQVPVSSSGSLQALSITDLPTISPSV---YDLSSIFEPVMSSTWAMQQQP 175

[Close]

BLAST of ClCG05G002190.1 vs. Swiss-Prot
Match: LBD19_ARATH (LOB domain-containing protein 19 OS=Arabidopsis thaliana GN=LBD19 PE=2 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 7.1e-42
Identity = 81/127 (63.78%), Postives = 98/127 (77.17%), Query Frame = 1


Query: 29  GKGG-GPCGACKFLRRKCMPECIFAPYFDSEQGTTHFAAVHKVFGASNVSKMLLHIPEHK 88
           G+GG GPCGACKFLRRKC+  C+FAPYFD+EQGT  FAAVHKVFGASN SKMLL +P HK
Sbjct: 10  GRGGEGPCGACKFLRRKCVKGCVFAPYFDAEQGTARFAAVHKVFGASNASKMLLRLPLHK 69

Query: 89  RLDAAITICYEAQARVREPVFGCVAHIFALQQQAARLQVEISYLQAHLAT-SELPRPAPN 148
           RLDA +T+CYEA AR+R+PV+G V H+F+LQ Q   LQ E++++QA L+T    P  +P 
Sbjct: 70  RLDAVVTLCYEAMARIRDPVYGSVGHLFSLQHQVMNLQAELAHVQARLSTIQRFPLQSPQ 129

Query: 149 LQAQPPA 154
            Q QPP+
Sbjct: 130 -QMQPPS 135

[Close]

BLAST of ClCG05G002190.1 vs. Swiss-Prot
Match: LBD31_ARATH (LOB domain-containing protein 31 OS=Arabidopsis thaliana GN=LBD31 PE=2 SV=2)

HSP 1 Score: 166.8 bits (421), Expect = 3.0e-40
Identity = 85/167 (50.90%), Postives = 107/167 (64.07%), Query Frame = 1


Query: 32  GGPCGACKFLRRKCMPECIFAPYFDSEQGTTHFAAVHKVFGASNVSKMLLHIPEHKRLDA 91
           GGPCGACKFLRRKC+ +C+FAPYFDS +GT+HF AVHKVFGASN SK+L+ IP  +RLDA
Sbjct: 9   GGPCGACKFLRRKCVADCVFAPYFDSVEGTSHFTAVHKVFGASNASKLLMMIPASRRLDA 68

Query: 92  AITICYEAQARVREPVFGCVAHIFALQQQAARLQVEISYLQAHLATSE-LPRP--APNLQ 151
            +T+ YEA AR+R+PV+GCV HIFALQ Q   LQ E++Y+Q  L+T + LP P    N +
Sbjct: 69  VVTLTYEALARLRDPVYGCVGHIFALQHQVMNLQAELAYVQTQLSTLQGLPPPNSQNNSR 128

Query: 152 AQPPALVKKPTLSSI---VNLPSDCPSFPAESDLSRLLDPIEQASRP 193
            +  +    P +SS+    N+ S     P  S       P E    P
Sbjct: 129 TEAASSSNVPLISSVDSKDNMSSSSSHIPCMSQQQEQEQPKEAIEVP 175

[Close]

BLAST of ClCG05G002190.1 vs. Swiss-Prot
Match: LBD16_ARATH (LOB domain-containing protein 16 OS=Arabidopsis thaliana GN=LBD16 PE=1 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 2.3e-37
Identity = 72/115 (62.61%), Postives = 87/115 (75.65%), Query Frame = 1


Query: 22  SRGSCPEGKGGGPCGACKFLRRKCMPECIFAPYFDSEQGTTHFAAVHKVFGASNVSKMLL 81
           S G+      G PCGACKFLRRKC  +CIFAPYF SEQG   FAA+HKVFGASNVSK+LL
Sbjct: 3   SSGNGTTAGTGSPCGACKFLRRKCASDCIFAPYFSSEQGAARFAAIHKVFGASNVSKLLL 62

Query: 82  HIPEHKRLDAAITICYEAQARVREPVFGCVAHIFALQQQAARLQVEISYLQAHLA 137
           ++P H R +A +TI YEAQAR+ +PV+GCV+HIFALQQQ A LQ ++  ++A +A
Sbjct: 63  NVPIHDRCEAVVTIAYEAQARLHDPVYGCVSHIFALQQQVAFLQSQVMQMKAQIA 117

[Close]

BLAST of ClCG05G002190.1 vs. TrEMBL
Match: A0A0A0L4D4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G126090 PE=4 SV=1)

HSP 1 Score: 395.6 bits (1015), Expect = 4.4e-107
Identity = 197/231 (85.28%), Postives = 212/231 (91.77%), Query Frame = 1


Query: 17  MSSRRSRGSCPEGKGG------GPCGACKFLRRKCMPECIFAPYFDSEQGTTHFAAVHKV 76
           MSSRRS GSC +GKGG      GPCGACKFLRRKCMPECIFAPYFDSEQG+THFAAVHKV
Sbjct: 1   MSSRRSGGSCTKGKGGGSNGSGGPCGACKFLRRKCMPECIFAPYFDSEQGSTHFAAVHKV 60

Query: 77  FGASNVSKMLLHIPEHKRLDAAITICYEAQARVREPVFGCVAHIFALQQQAARLQVEISY 136
           FGASNVSKMLLHIPEHKRLDAAITICYEAQARVREPV GCV+HIFALQQQAARLQ+EISY
Sbjct: 61  FGASNVSKMLLHIPEHKRLDAAITICYEAQARVREPVLGCVSHIFALQQQAARLQIEISY 120

Query: 137 LQAHLATSELPRPAPNLQAQPPALVKKPTLSSIVNLPSDCPSFPAESDLSRLLDPIEQAS 196
           LQA+LATSELPR AP+LQAQPPALVKKPTLSSI++LPSDCPSFPAESDLS LLDP+EQ S
Sbjct: 121 LQAYLATSELPRSAPHLQAQPPALVKKPTLSSIISLPSDCPSFPAESDLSLLLDPVEQVS 180

Query: 197 RPKLQSPLELSQIGSNSFPSMSSIDQQIVQKQLASMRHIGASLFPCVPKGA 242
           + KLQSPLE  QIGSN+FPSM SIDQQ+VQKQL+SM+ IGASLFP +PK A
Sbjct: 181 QEKLQSPLESYQIGSNNFPSMGSIDQQVVQKQLSSMQRIGASLFPNIPKRA 231

[Close]

BLAST of ClCG05G002190.1 vs. TrEMBL
Match: A0A068VAN4_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00003900001 PE=4 SV=1)

HSP 1 Score: 238.0 bits (606), Expect = 1.2e-59
Identity = 131/232 (56.47%), Postives = 157/232 (67.67%), Query Frame = 1


Query: 12  ASKAEMSSRRSRGSCPEGKGGGPCGACKFLRRKCMPECIFAPYFDSEQGTTHFAAVHKVF 71
           A+ +   S  + GS     GGGPCGACKFLRRKC+  CIFAPYFDSEQG  HFAAVHKVF
Sbjct: 3   ANTSSSPSGGAAGSSSGNTGGGPCGACKFLRRKCVAGCIFAPYFDSEQGAAHFAAVHKVF 62

Query: 72  GASNVSKMLLHIPEHKRLDAAITICYEAQARVREPVFGCVAHIFALQQQAARLQVEISYL 131
           GASNVSK+LLHIP HKRLDA +TICYEAQAR+R+PVFGCVAHIFALQQQ   LQ E+SYL
Sbjct: 63  GASNVSKLLLHIPVHKRLDAVVTICYEAQARLRDPVFGCVAHIFALQQQVVNLQAELSYL 122

Query: 132 QAHLATSELPRPAPNLQAQPPALVKKPTLSSIVNLPSDCPSFPAESDLSRLLDPIEQASR 191
           Q HLAT ELP P P   AQP  ++  P+L +I +LP+   S PA  DLS L DP+ Q   
Sbjct: 123 QGHLATLELPPPPPP-SAQPQPIIAPPSL-TIADLPTGSSSAPATYDLSSLFDPVVQLPW 182

Query: 192 PKLQSPLELS--QIGSNSFPSMSSI-----DQQIVQKQLASMRHIGASLFPC 237
             +Q P ++   Q G+   P+ +S      D Q + ++L   RH  +S  PC
Sbjct: 183 -TMQQPRQMDSHQFGAARAPAEASSSAGTGDLQELARELLH-RHRTSSTVPC 230

[Close]

BLAST of ClCG05G002190.1 vs. TrEMBL
Match: A0A067KAC7_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14515 PE=4 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 7.6e-59
Identity = 130/209 (62.20%), Postives = 148/209 (70.81%), Query Frame = 1


Query: 24  GSCPEGKGGGPCGACKFLRRKCMPECIFAPYFDSEQGTTHFAAVHKVFGASNVSKMLLHI 83
           GS   G G GPCGACKFLRRKC+P CIFAPYFDSEQG  HFAAVHKVFGASNVSK+LLHI
Sbjct: 19  GSSSSG-GSGPCGACKFLRRKCVPGCIFAPYFDSEQGAAHFAAVHKVFGASNVSKLLLHI 78

Query: 84  PEHKRLDAAITICYEAQARVREPVFGCVAHIFALQQQAARLQVEISYLQAHLATSELPRP 143
           P HKRLDA +TICYEAQAR+R+PV+GCVAHIFALQQQ   LQ E++YLQAHLAT E+P P
Sbjct: 79  PVHKRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQVVNLQAELTYLQAHLATLEVPSP 138

Query: 144 APNLQAQPPALVKKPTLSSIVNLPSDCPSFPAESDLSRLLDPIEQASRPKLQSPLELSQI 203
            P     PPALV  P   SI +LPS   S PA  DLS L DPI Q S    Q  ++  Q 
Sbjct: 139 PPP-PPPPPALV-TPLPLSISDLPS-ASSMPATYDLSSLFDPITQPSWTMQQRQMDPRQF 198

Query: 204 GSNSFPSMSSI----DQQIVQKQLASMRH 229
           G +S  S  +I    D Q + ++L  +RH
Sbjct: 199 GGSSTSSSPAISGGGDLQSLARELL-LRH 222

[Close]

BLAST of ClCG05G002190.1 vs. TrEMBL
Match: A0A0D2MZ41_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G161100 PE=4 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 1.7e-58
Identity = 129/215 (60.00%), Postives = 147/215 (68.37%), Query Frame = 1


Query: 24  GSCPEGKGGGPCGACKFLRRKCMPECIFAPYFDSEQGTTHFAAVHKVFGASNVSKMLLHI 83
           GS   G GGGPCGACKFLRRKC+P CIFAPYFDSEQG  HFAAVHKVFGASNVSK+LLHI
Sbjct: 25  GSGGGGSGGGPCGACKFLRRKCVPGCIFAPYFDSEQGAAHFAAVHKVFGASNVSKLLLHI 84

Query: 84  PEHKRLDAAITICYEAQARVREPVFGCVAHIFALQQQAARLQVEISYLQAHLATSELPRP 143
           P HKRLDA +TIC+EAQAR+R+PV+GCVAHIFALQQQ   LQ E+SYLQAHL T ELP P
Sbjct: 85  PVHKRLDAVVTICFEAQARLRDPVYGCVAHIFALQQQVVNLQAELSYLQAHLTTLELPSP 144

Query: 144 APNLQAQPPALVKKPTLSSIVNLPSDCPSFPAESDLSRLLDP-IEQASRPKLQSPLELSQ 203
            P        LV  P L SI +LPS   S PA  DLS L DP + Q S    Q  ++  Q
Sbjct: 145 PPPPPPPSQTLVAAPPL-SISDLPS-ASSVPATYDLSSLFDPMVAQTSWAMQQRQIDPRQ 204

Query: 204 I-GSNSFPSMSSIDQQIVQKQLASMRHIGASLFPC 237
             G+ S  S  S D Q + ++L  +   G+   PC
Sbjct: 205 YGGTGSASSTGSGDLQALAREL--LHRQGSPHLPC 235

[Close]

BLAST of ClCG05G002190.1 vs. TrEMBL
Match: B9IC05_POPTR (LOB domain protein 18 OS=Populus trichocarpa GN=POPTR_0014s06600g PE=4 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 2.9e-58
Identity = 125/202 (61.88%), Postives = 142/202 (70.30%), Query Frame = 1


Query: 29  GKGGGPCGACKFLRRKCMPECIFAPYFDSEQGTTHFAAVHKVFGASNVSKMLLHIPEHKR 88
           G GGGPCGACKFLRRKC+P CIFAPYFDSEQG  HFAAVHKVFGASNVSK+LLHIP HKR
Sbjct: 29  GGGGGPCGACKFLRRKCVPGCIFAPYFDSEQGAAHFAAVHKVFGASNVSKLLLHIPVHKR 88

Query: 89  LDAAITICYEAQARVREPVFGCVAHIFALQQQAARLQVEISYLQAHLATSELPRPAPNLQ 148
           LDA +TICYEAQAR+R+PV+GCVAHIFALQQQ   LQ E+SYLQAHLA  E+P P P   
Sbjct: 89  LDAVVTICYEAQARLRDPVYGCVAHIFALQQQVVNLQAELSYLQAHLAALEVPSPPP--- 148

Query: 149 AQPPALVKKPTLSSIVNLPSDCPSFPAESDLSRLLDPIEQASRPKL--QSPLELSQI-GS 208
             PP LV  P L SI +LPS   S PA  DLS L DP+ Q S   +  Q  +++ Q  GS
Sbjct: 149 PPPPTLVTPPPL-SIADLPS-ASSIPAAYDLSCLFDPMMQPSWSNMQPQRQMDIRQFGGS 208

Query: 209 NSFPSMSSIDQQIVQKQLASMR 228
                    D Q + ++L   R
Sbjct: 209 GGSSGTGGGDLQALARELLHRR 225

[Close]

BLAST of ClCG05G002190.1 vs. TAIR10
Match: AT2G45420.1 (AT2G45420.1 LOB domain-containing protein 18)

HSP 1 Score: 218.4 bits (555), Expect = 4.8e-57
Identity = 107/171 (62.57%), Postives = 124/171 (72.51%), Query Frame = 1


Query: 24  GSCPEGKGGGPCGACKFLRRKCMPECIFAPYFDSEQGTTHFAAVHKVFGASNVSKMLLHI 83
           G    G GGGPCGACKFLRRKC+P CIFAPYFDSEQG+ +FAAVHKVFGASNVSK+LLHI
Sbjct: 27  GGSSGGGGGGPCGACKFLRRKCVPGCIFAPYFDSEQGSAYFAAVHKVFGASNVSKLLLHI 86

Query: 84  PEHKRLDAAITICYEAQARVREPVFGCVAHIFALQQQAARLQVEISYLQAHLATSELP-- 143
           P H+R DA +TICYEAQAR+R+P++GCVAHIFALQQQ   LQ E+SYLQAHLA+ ELP  
Sbjct: 87  PVHRRSDAVVTICYEAQARIRDPIYGCVAHIFALQQQVVNLQAEVSYLQAHLASLELPQP 146

Query: 144 --RPAPNLQAQPPALVKKPTLSSIVNLPSDCPSFPAESDLSRLLDPIEQAS 191
             RP P  Q QP      P L +I +LP+     P+  DL+ + D    +S
Sbjct: 147 QTRPQPMPQPQPLFFTPPPPL-AITDLPASVSPLPSTYDLASIFDQTTSSS 196

[Close]

BLAST of ClCG05G002190.1 vs. TAIR10
Match: AT4G00220.1 (AT4G00220.1 Lateral organ boundaries (LOB) domain family protein)

HSP 1 Score: 205.3 bits (521), Expect = 4.2e-53
Identity = 104/177 (58.76%), Postives = 125/177 (70.62%), Query Frame = 1


Query: 25  SCPEGKGGGPCGACKFLRRKCMPECIFAPYFDSEQGTTHFAAVHKVFGASNVSKMLLHIP 84
           S   G GGGPCGACKFLRRKC+  CIFAPYFDSEQG  HFAAVHKVFGASNVSK+L H+P
Sbjct: 8   SSSSGGGGGPCGACKFLRRKCVAGCIFAPYFDSEQGAAHFAAVHKVFGASNVSKLLHHVP 67

Query: 85  EHKRLDAAITICYEAQARVREPVFGCVAHIFALQQQAARLQVEISYLQAHLATSELPRPA 144
           EHKR DA ++IC+EAQAR+R+P++GCV+HI +LQQQ   LQ E+SYLQAHLAT ELP+P 
Sbjct: 68  EHKRPDAVVSICFEAQARLRDPIYGCVSHIVSLQQQVVSLQTELSYLQAHLATLELPQP- 127

Query: 145 PNLQAQPPALVKKPTLS----SIVNLPSDCPSFPAESDLSRLLDPIEQASRPKLQSP 198
                QPP +    + S    SI +LP+  PS     DLS + +P+  ++    Q P
Sbjct: 128 -----QPPQVPVSSSGSLQALSITDLPTISPSV---YDLSSIFEPVMSSTWAMQQQP 175

[Close]

BLAST of ClCG05G002190.1 vs. TAIR10
Match: AT2G45410.1 (AT2G45410.1 LOB domain-containing protein 19)

HSP 1 Score: 172.2 bits (435), Expect = 4.0e-43
Identity = 81/127 (63.78%), Postives = 98/127 (77.17%), Query Frame = 1


Query: 29  GKGG-GPCGACKFLRRKCMPECIFAPYFDSEQGTTHFAAVHKVFGASNVSKMLLHIPEHK 88
           G+GG GPCGACKFLRRKC+  C+FAPYFD+EQGT  FAAVHKVFGASN SKMLL +P HK
Sbjct: 10  GRGGEGPCGACKFLRRKCVKGCVFAPYFDAEQGTARFAAVHKVFGASNASKMLLRLPLHK 69

Query: 89  RLDAAITICYEAQARVREPVFGCVAHIFALQQQAARLQVEISYLQAHLAT-SELPRPAPN 148
           RLDA +T+CYEA AR+R+PV+G V H+F+LQ Q   LQ E++++QA L+T    P  +P 
Sbjct: 70  RLDAVVTLCYEAMARIRDPVYGSVGHLFSLQHQVMNLQAELAHVQARLSTIQRFPLQSPQ 129

Query: 149 LQAQPPA 154
            Q QPP+
Sbjct: 130 -QMQPPS 135

[Close]

BLAST of ClCG05G002190.1 vs. TAIR10
Match: AT4G00210.1 (AT4G00210.1 LOB domain-containing protein 31)

HSP 1 Score: 166.8 bits (421), Expect = 1.7e-41
Identity = 85/167 (50.90%), Postives = 107/167 (64.07%), Query Frame = 1


Query: 32  GGPCGACKFLRRKCMPECIFAPYFDSEQGTTHFAAVHKVFGASNVSKMLLHIPEHKRLDA 91
           GGPCGACKFLRRKC+ +C+FAPYFDS +GT+HF AVHKVFGASN SK+L+ IP  +RLDA
Sbjct: 9   GGPCGACKFLRRKCVADCVFAPYFDSVEGTSHFTAVHKVFGASNASKLLMMIPASRRLDA 68

Query: 92  AITICYEAQARVREPVFGCVAHIFALQQQAARLQVEISYLQAHLATSE-LPRP--APNLQ 151
            +T+ YEA AR+R+PV+GCV HIFALQ Q   LQ E++Y+Q  L+T + LP P    N +
Sbjct: 69  VVTLTYEALARLRDPVYGCVGHIFALQHQVMNLQAELAYVQTQLSTLQGLPPPNSQNNSR 128

Query: 152 AQPPALVKKPTLSSI---VNLPSDCPSFPAESDLSRLLDPIEQASRP 193
            +  +    P +SS+    N+ S     P  S       P E    P
Sbjct: 129 TEAASSSNVPLISSVDSKDNMSSSSSHIPCMSQQQEQEQPKEAIEVP 175

[Close]

BLAST of ClCG05G002190.1 vs. TAIR10
Match: AT2G42430.1 (AT2G42430.1 lateral organ boundaries-domain 16)

HSP 1 Score: 157.1 bits (396), Expect = 1.3e-38
Identity = 72/115 (62.61%), Postives = 87/115 (75.65%), Query Frame = 1


Query: 22  SRGSCPEGKGGGPCGACKFLRRKCMPECIFAPYFDSEQGTTHFAAVHKVFGASNVSKMLL 81
           S G+      G PCGACKFLRRKC  +CIFAPYF SEQG   FAA+HKVFGASNVSK+LL
Sbjct: 3   SSGNGTTAGTGSPCGACKFLRRKCASDCIFAPYFSSEQGAARFAAIHKVFGASNVSKLLL 62

Query: 82  HIPEHKRLDAAITICYEAQARVREPVFGCVAHIFALQQQAARLQVEISYLQAHLA 137
           ++P H R +A +TI YEAQAR+ +PV+GCV+HIFALQQQ A LQ ++  ++A +A
Sbjct: 63  NVPIHDRCEAVVTIAYEAQARLHDPVYGCVSHIFALQQQVAFLQSQVMQMKAQIA 117

[Close]

BLAST of ClCG05G002190.1 vs. NCBI nr
Match: gi|659075449|ref|XP_008438149.1| (PREDICTED: LOB domain-containing protein 18 [Cucumis melo])

HSP 1 Score: 398.7 bits (1023), Expect = 7.4e-108
Identity = 200/229 (87.34%), Postives = 211/229 (92.14%), Query Frame = 1


Query: 17  MSSRRSRGSCPEGKGG------GPCGACKFLRRKCMPECIFAPYFDSEQGTTHFAAVHKV 76
           MSSRRS GSC +GKGG      GPCGACKFLRRKC PECIFAPYFDSEQGTTHFAAVHKV
Sbjct: 1   MSSRRSSGSCTKGKGGGSNGSGGPCGACKFLRRKCTPECIFAPYFDSEQGTTHFAAVHKV 60

Query: 77  FGASNVSKMLLHIPEHKRLDAAITICYEAQARVREPVFGCVAHIFALQQQAARLQVEISY 136
           FGASNVSKMLLHIPEHKRLDAAITICYEAQARVREPV GCVAHIFALQQQAARLQ+EISY
Sbjct: 61  FGASNVSKMLLHIPEHKRLDAAITICYEAQARVREPVLGCVAHIFALQQQAARLQIEISY 120

Query: 137 LQAHLATSELPRPAPNLQAQPPALVKKPTLSSIVNLPSDCPSFPAESDLSRLLDPIEQAS 196
           LQ +LATSELPRPAP+LQAQPPALVKKPTLSSIV+LPSDCPSFPAESDLS LLDP+EQAS
Sbjct: 121 LQGYLATSELPRPAPHLQAQPPALVKKPTLSSIVSLPSDCPSFPAESDLSLLLDPVEQAS 180

Query: 197 RPKLQSPLELSQIGSNSFPSMSSIDQQIVQKQLASMRHIGASLFPCVPK 240
           + KLQSPLE  QIGSN+FPSM SIDQQ+VQKQL+SM+ IGASLFP VPK
Sbjct: 181 QEKLQSPLESYQIGSNNFPSMVSIDQQVVQKQLSSMQRIGASLFPNVPK 229

[Close]

BLAST of ClCG05G002190.1 vs. NCBI nr
Match: gi|449433121|ref|XP_004134346.1| (PREDICTED: LOB domain-containing protein 18 [Cucumis sativus])

HSP 1 Score: 395.6 bits (1015), Expect = 6.3e-107
Identity = 197/231 (85.28%), Postives = 212/231 (91.77%), Query Frame = 1


Query: 17  MSSRRSRGSCPEGKGG------GPCGACKFLRRKCMPECIFAPYFDSEQGTTHFAAVHKV 76
           MSSRRS GSC +GKGG      GPCGACKFLRRKCMPECIFAPYFDSEQG+THFAAVHKV
Sbjct: 1   MSSRRSGGSCTKGKGGGSNGSGGPCGACKFLRRKCMPECIFAPYFDSEQGSTHFAAVHKV 60

Query: 77  FGASNVSKMLLHIPEHKRLDAAITICYEAQARVREPVFGCVAHIFALQQQAARLQVEISY 136
           FGASNVSKMLLHIPEHKRLDAAITICYEAQARVREPV GCV+HIFALQQQAARLQ+EISY
Sbjct: 61  FGASNVSKMLLHIPEHKRLDAAITICYEAQARVREPVLGCVSHIFALQQQAARLQIEISY 120

Query: 137 LQAHLATSELPRPAPNLQAQPPALVKKPTLSSIVNLPSDCPSFPAESDLSRLLDPIEQAS 196
           LQA+LATSELPR AP+LQAQPPALVKKPTLSSI++LPSDCPSFPAESDLS LLDP+EQ S
Sbjct: 121 LQAYLATSELPRSAPHLQAQPPALVKKPTLSSIISLPSDCPSFPAESDLSLLLDPVEQVS 180

Query: 197 RPKLQSPLELSQIGSNSFPSMSSIDQQIVQKQLASMRHIGASLFPCVPKGA 242
           + KLQSPLE  QIGSN+FPSM SIDQQ+VQKQL+SM+ IGASLFP +PK A
Sbjct: 181 QEKLQSPLESYQIGSNNFPSMGSIDQQVVQKQLSSMQRIGASLFPNIPKRA 231

[Close]

BLAST of ClCG05G002190.1 vs. NCBI nr
Match: gi|661878479|emb|CDP17781.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 238.0 bits (606), Expect = 1.7e-59
Identity = 131/232 (56.47%), Postives = 157/232 (67.67%), Query Frame = 1


Query: 12  ASKAEMSSRRSRGSCPEGKGGGPCGACKFLRRKCMPECIFAPYFDSEQGTTHFAAVHKVF 71
           A+ +   S  + GS     GGGPCGACKFLRRKC+  CIFAPYFDSEQG  HFAAVHKVF
Sbjct: 3   ANTSSSPSGGAAGSSSGNTGGGPCGACKFLRRKCVAGCIFAPYFDSEQGAAHFAAVHKVF 62

Query: 72  GASNVSKMLLHIPEHKRLDAAITICYEAQARVREPVFGCVAHIFALQQQAARLQVEISYL 131
           GASNVSK+LLHIP HKRLDA +TICYEAQAR+R+PVFGCVAHIFALQQQ   LQ E+SYL
Sbjct: 63  GASNVSKLLLHIPVHKRLDAVVTICYEAQARLRDPVFGCVAHIFALQQQVVNLQAELSYL 122

Query: 132 QAHLATSELPRPAPNLQAQPPALVKKPTLSSIVNLPSDCPSFPAESDLSRLLDPIEQASR 191
           Q HLAT ELP P P   AQP  ++  P+L +I +LP+   S PA  DLS L DP+ Q   
Sbjct: 123 QGHLATLELPPPPPP-SAQPQPIIAPPSL-TIADLPTGSSSAPATYDLSSLFDPVVQLPW 182

Query: 192 PKLQSPLELS--QIGSNSFPSMSSI-----DQQIVQKQLASMRHIGASLFPC 237
             +Q P ++   Q G+   P+ +S      D Q + ++L   RH  +S  PC
Sbjct: 183 -TMQQPRQMDSHQFGAARAPAEASSSAGTGDLQELARELLH-RHRTSSTVPC 230

[Close]

BLAST of ClCG05G002190.1 vs. NCBI nr
Match: gi|802699504|ref|XP_012083561.1| (PREDICTED: LOB domain-containing protein 18 [Jatropha curcas])

HSP 1 Score: 235.3 bits (599), Expect = 1.1e-58
Identity = 130/209 (62.20%), Postives = 148/209 (70.81%), Query Frame = 1


Query: 24  GSCPEGKGGGPCGACKFLRRKCMPECIFAPYFDSEQGTTHFAAVHKVFGASNVSKMLLHI 83
           GS   G G GPCGACKFLRRKC+P CIFAPYFDSEQG  HFAAVHKVFGASNVSK+LLHI
Sbjct: 19  GSSSSG-GSGPCGACKFLRRKCVPGCIFAPYFDSEQGAAHFAAVHKVFGASNVSKLLLHI 78

Query: 84  PEHKRLDAAITICYEAQARVREPVFGCVAHIFALQQQAARLQVEISYLQAHLATSELPRP 143
           P HKRLDA +TICYEAQAR+R+PV+GCVAHIFALQQQ   LQ E++YLQAHLAT E+P P
Sbjct: 79  PVHKRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQVVNLQAELTYLQAHLATLEVPSP 138

Query: 144 APNLQAQPPALVKKPTLSSIVNLPSDCPSFPAESDLSRLLDPIEQASRPKLQSPLELSQI 203
            P     PPALV  P   SI +LPS   S PA  DLS L DPI Q S    Q  ++  Q 
Sbjct: 139 PPP-PPPPPALV-TPLPLSISDLPS-ASSMPATYDLSSLFDPITQPSWTMQQRQMDPRQF 198

Query: 204 GSNSFPSMSSI----DQQIVQKQLASMRH 229
           G +S  S  +I    D Q + ++L  +RH
Sbjct: 199 GGSSTSSSPAISGGGDLQSLARELL-LRH 222

[Close]

BLAST of ClCG05G002190.1 vs. NCBI nr
Match: gi|743788802|ref|XP_011034497.1| (PREDICTED: LOW QUALITY PROTEIN: LOB domain-containing protein 18 [Populus euphratica])

HSP 1 Score: 235.0 bits (598), Expect = 1.4e-58
Identity = 126/202 (62.38%), Postives = 142/202 (70.30%), Query Frame = 1


Query: 29  GKGGGPCGACKFLRRKCMPECIFAPYFDSEQGTTHFAAVHKVFGASNVSKMLLHIPEHKR 88
           G GGGPCGACKFLRRKC+P CIFAPYFDSEQG  HFAAVHKVFGASNVSK+LLHIP HKR
Sbjct: 28  GGGGGPCGACKFLRRKCVPGCIFAPYFDSEQGAAHFAAVHKVFGASNVSKLLLHIPVHKR 87

Query: 89  LDAAITICYEAQARVREPVFGCVAHIFALQQQAARLQVEISYLQAHLATSELPRPAPNLQ 148
           LDA +TICYEAQAR+R+PV+GCVAHIFALQQQ   LQ E+SYLQAHLA  E+P P P   
Sbjct: 88  LDAVVTICYEAQARLRDPVYGCVAHIFALQQQVVNLQAELSYLQAHLAALEVPSPPP--- 147

Query: 149 AQPPALVKKPTLSSIVNLPSDCPSFPAESDLSRLLDPIEQASRPKLQS--PLELSQIG-S 208
             PP LV  P L SI +LPS   S PA  DLS L DP+ Q S   +Q    ++  Q G S
Sbjct: 148 PPPPTLVTPPPL-SIADLPS-ASSIPAAYDLSSLFDPMMQPSWSNMQQQRQMDTRQFGDS 207

Query: 209 NSFPSMSSIDQQIVQKQLASMR 228
                 S  D Q + ++L   R
Sbjct: 208 GGSSGTSGGDLQALARELLHRR 224

The following BLAST results are available for this feature:

BLAST of ClCG05G002190.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
LBD18_ARATH	8.6e-56	62.57	LOB domain-containing protein 18 OS=Arabidopsis thaliana GN=LBD18 PE=1 SV=2	[more]
LBD30_ARATH	7.5e-52	58.76	LOB domain-containing protein 30 OS=Arabidopsis thaliana GN=LBD30 PE=2 SV=1	[more]
LBD19_ARATH	7.1e-42	63.78	LOB domain-containing protein 19 OS=Arabidopsis thaliana GN=LBD19 PE=2 SV=1	[more]
LBD31_ARATH	3.0e-40	50.90	LOB domain-containing protein 31 OS=Arabidopsis thaliana GN=LBD31 PE=2 SV=2	[more]
LBD16_ARATH	2.3e-37	62.61	LOB domain-containing protein 16 OS=Arabidopsis thaliana GN=LBD16 PE=1 SV=1	[more]

BLAST of ClCG05G002190.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L4D4_CUCSA	4.4e-107	85.28	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G126090 PE=4 SV=1	[more]
A0A068VAN4_COFCA	1.2e-59	56.47	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00003900001 PE=4 SV=1	[more]
A0A067KAC7_JATCU	7.6e-59	62.20	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14515 PE=4 SV=1	[more]
A0A0D2MZ41_GOSRA	1.7e-58	60.00	Uncharacterized protein OS=Gossypium raimondii GN=B456_004G161100 PE=4 SV=1	[more]
B9IC05_POPTR	2.9e-58	61.88	LOB domain protein 18 OS=Populus trichocarpa GN=POPTR_0014s06600g PE=4 SV=1	[more]

BLAST of ClCG05G002190.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G45420.1	4.8e-57	62.57	LOB domain-containing protein 18	[more]
AT4G00220.1	4.2e-53	58.76	Lateral organ boundaries (LOB) domain family protein	[more]
AT2G45410.1	4.0e-43	63.78	LOB domain-containing protein 19	[more]
AT4G00210.1	1.7e-41	50.90	LOB domain-containing protein 31	[more]
AT2G42430.1	1.3e-38	62.61	lateral organ boundaries-domain 16	[more]

BLAST of ClCG05G002190.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659075449\|ref\|XP_008438149.1\|	7.4e-108	87.34	PREDICTED: LOB domain-containing protein 18 [Cucumis melo]	[more]
gi\|449433121\|ref\|XP_004134346.1\|	6.3e-107	85.28	PREDICTED: LOB domain-containing protein 18 [Cucumis sativus]	[more]
gi\|661878479\|emb\|CDP17781.1\|	1.7e-59	56.47	unnamed protein product [Coffea canephora]	[more]
gi\|802699504\|ref\|XP_012083561.1\|	1.1e-58	62.20	PREDICTED: LOB domain-containing protein 18 [Jatropha curcas]	[more]
gi\|743788802\|ref\|XP_011034497.1\|	1.4e-58	62.38	PREDICTED: LOW QUALITY PROTEIN: LOB domain-containing protein 18 [Populus euphra...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR004883	LOB

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
ClCG05G002190	ClCG05G002190	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
ClCG05G002190.1	ClCG05G002190.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG05G002190.1.cds2	ClCG05G002190.1.cds2	CDS
ClCG05G002190.1.cds1	ClCG05G002190.1.cds1	CDS

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004883	Lateral organ boundaries, LOB	PFAM	PF03195	DUF260	coord: 34..132 score: 1.0
IPR004883	Lateral organ boundaries, LOB	PROFILE	PS50891	LOB	coord: 33..135 score: 22
None	No IPR available	PANTHER	PTHR31529	FAMILY NOT NAMED	coord: 7..195 score: 3.8
None	No IPR available	PANTHER	PTHR31529:SF3	LOB DOMAIN-CONTAINING PROTEIN 18-RELATED	coord: 7..195 score: 3.8