ClCG05G000560.1 (mRNA) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG05G000560.1
Type	mRNA
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Mitochondrial glycoprotein family protein LENGTH=227
Location	CG_Chr05 : 691337 .. 692466 (-)
Sequence length	255

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTTTAAATTGTCATGGCTTCTTTGGCTGTACAGCATGGGAGTCTTTAAGTAAGTTGGCGTCAATTTATATTGAAGTTCGTTGTCTCACGTTGTAACTTAAACTGCACAAGAACAACCCAACCCATTTGGTAATGAACTGTTCTGGGTTGTTGGTTTGGTTGGCAGGTTAAAAGAAGTCTGTTAGTTTTTCTCAAATACTCATAGTTTATTGGGTATGCAGCTTATCATTGTATTCTGCACTTGTTGAATCCTTGCAGTTGATTGAATCCTTCATAGTTAATATCACGTTGTTCACTAATCACTCACTAGGGATACTTGCATCTTGCACCTAGCAAATTTGCAGATTTTTAGAAGTTAGTTCTCCTTGTGGCTTTCTTGGTTGATTTGGCTTGTGCTCTTGCATGGCCTGGTTCTGCAGTCATTTGATTTTATTTTTGTGAAAGCCATCTCTTATTAAAATGTATTTGGTGATGCTTGTTCTTCATAATTGCCCTGGTGCCTAAGTGTTATGATGTCAGTTGTTATTGGGTTTAAATGTCATTTGGGATATGTACTCTGGAACTTATCCAATTTACTCTTCGTACATTCTAATGTCTAAACTTGTAGCCGTAACTTGTTCAAAGAAATTAGTCTCTATTAGCCTTCCATTTATGAATTTTGGAAGAATATTCACATTGTATCTTTTCTTGAATGAAAATAAAGATTTGTTGAAAATGCATGGAGTAATATTAGACATTTAAAAGTACATAGACTATGGAACGTGATACAGAGTAGGAGCAAAATATTATTTTAACTTTTTTCTTTTCACAGCATAGATGCCTGTTTCTATGAACCAAGTGGGATTGTGATGTTTTCCGACTTTATGATCTCCATATACTGACAATATTGATCAAATAACCGTTAATGGAGAAGTATGTCATTAGAAACATACACTTCTTCTTCTCTGGATGACCGAGATGTAGTTGAGAAAATGCAAGATGTGCTTCACAATTACAGAGTCGAGCAAGGCATTAAGAAGTCTCTCTTTCTATTTCTTCAAGCATGGCTTTATGTGAAGGAGCATCAAAATGTTATGTGGTCATTCAGATTGGTTGACTCATTCATCAAGGAGCATGAGAACACCTAA

mRNA sequence

ATGTCTTTAAATTGTCATGGCTTCTTTGGCTGTACAGCATGGGAGTCTTTAAAAACATACACTTCTTCTTCTCTGGATGACCGAGATGTAGTTGAGAAAATGCAAGATGTGCTTCACAATTACAGAGTCGAGCAAGGCATTAAGAAGTCTCTCTTTCTATTTCTTCAAGCATGGCTTTATGTGAAGGAGCATCAAAATGTTATGTGGTCATTCAGATTGGTTGACTCATTCATCAAGGAGCATGAGAACACCTAA

Coding sequence (CDS)

ATGTCTTTAAATTGTCATGGCTTCTTTGGCTGTACAGCATGGGAGTCTTTAAAAACATACACTTCTTCTTCTCTGGATGACCGAGATGTAGTTGAGAAAATGCAAGATGTGCTTCACAATTACAGAGTCGAGCAAGGCATTAAGAAGTCTCTCTTTCTATTTCTTCAAGCATGGCTTTATGTGAAGGAGCATCAAAATGTTATGTGGTCATTCAGATTGGTTGACTCATTCATCAAGGAGCATGAGAACACCTAA

Protein sequence

MSLNCHGFFGCTAWESLKTYTSSSLDDRDVVEKMQDVLHNYRVEQGIKKSLFLFLQAWLYVKEHQNVMWSFRLVDSFIKEHENT

Homology

[Close]

BLAST of ClCG05G000560.1 vs. TrEMBL
Match: A0A0A0KCG3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G046350 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.1e-09
Identity = 34/65 (52.31%), Postives = 47/65 (72.31%), Query Frame = 1


Query: 19  TYTSSSLDDRDVVEKMQDVLHNYRVEQGIKKSLFLFLQAWLYVKEHQNVMWSFRLVDSFI 78
           +Y   + +D D  EKM+D+ HNY  E+G+ +SLF FLQAWLYVKEH+N++  FR V +FI
Sbjct: 164 SYNGPTFEDLD--EKMRDMFHNYIEERGVNESLFPFLQAWLYVKEHRNLLRWFRSVGTFI 223

Query: 79  KEHEN 84
            E +N
Sbjct: 224 YEPKN 226

[Close]

BLAST of ClCG05G000560.1 vs. TrEMBL
Match: D7M9R6_ARALL (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_328472 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 7.3e-09
Identity = 34/68 (50.00%), Postives = 48/68 (70.59%), Query Frame = 1


Query: 20  YTSSSLDDRDVVEKMQDVLHNYRVEQGIKKSLFLFLQAWLYVKEHQNVMWSFRLVDSFIK 79
           YT  S ++ D  EKM+DV H Y  E+G+ +SLF FLQAWLYVK+H+N++  F+ V +F+ 
Sbjct: 483 YTGPSFEELD--EKMRDVFHGYLEERGVNESLFPFLQAWLYVKDHRNLLRWFKSVGTFVH 542

Query: 80  EH---ENT 85
           E+   ENT
Sbjct: 543 ENPSAENT 548

[Close]

BLAST of ClCG05G000560.1 vs. TrEMBL
Match: A0A067JSX1_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02865 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.2e-08
Identity = 30/53 (56.60%), Postives = 42/53 (79.25%), Query Frame = 1


Query: 32  EKMQDVLHNYRVEQGIKKSLFLFLQAWLYVKEHQNVMWSFRLVDSFIKEHENT 85
           EKM+D LH+Y  E+G+ +SLF FLQAWLYVK+H+N+M  F+ V  FI E+++T
Sbjct: 167 EKMRDALHSYIEERGVNESLFNFLQAWLYVKDHRNLMRWFKSVGMFINENKST 219

[Close]

BLAST of ClCG05G000560.1 vs. TrEMBL
Match: A0A067K796_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15497 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.2e-08
Identity = 30/53 (56.60%), Postives = 42/53 (79.25%), Query Frame = 1


Query: 32  EKMQDVLHNYRVEQGIKKSLFLFLQAWLYVKEHQNVMWSFRLVDSFIKEHENT 85
           EKM+D LH+Y  E+G+ +SLF FLQAWLYVK+H+N+M  F+ V  FI E+++T
Sbjct: 133 EKMRDALHSYIEERGVNESLFNFLQAWLYVKDHRNLMRWFKSVGMFINENKST 185

[Close]

BLAST of ClCG05G000560.1 vs. TrEMBL
Match: Q8LAC7_ARATH (Putative uncharacterized protein OS=Arabidopsis thaliana PE=2 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 2.1e-08
Identity = 33/68 (48.53%), Postives = 48/68 (70.59%), Query Frame = 1


Query: 20  YTSSSLDDRDVVEKMQDVLHNYRVEQGIKKSLFLFLQAWLYVKEHQNVMWSFRLVDSFIK 79
           YT  S ++ D  EKM+DV H +  E+G+ +SLF FLQAWLYVK+H+N++  F+ V +F+ 
Sbjct: 161 YTGPSFEELD--EKMRDVFHGFLEERGVNESLFPFLQAWLYVKDHRNLLRWFKSVGTFVH 220

Query: 80  EH---ENT 85
           E+   ENT
Sbjct: 221 ENPSAENT 226

[Close]

BLAST of ClCG05G000560.1 vs. TAIR10
Match: AT4G32605.1 (AT4G32605.1 Mitochondrial glycoprotein family protein)

HSP 1 Score: 66.2 bits (160), Expect = 1.1e-11
Identity = 33/68 (48.53%), Postives = 46/68 (67.65%), Query Frame = 1


Query: 20  YTSSSLDDRDVVEKMQDVLHNYRVEQGIKKSLFLFLQAWLYVKEHQNVMWSFRLVDSFIK 79
           YT  S ++ D  EKM+DV H +  E+G+ +SLF FLQAWLYVK+H+N++  F+ V +F+ 
Sbjct: 161 YTGPSFEELD--EKMRDVFHGFLEERGVNESLFPFLQAWLYVKDHRNLLRWFKSVGTFVH 220

Query: 80  EH---ENT 85
           E+   ENT
Sbjct: 221 ENPSAENT 226

[Close]

BLAST of ClCG05G000560.1 vs. NCBI nr
Match: gi|449446313|ref|XP_004140916.1| (PREDICTED: uncharacterized protein At2g39795, mitochondrial [Cucumis sativus])

HSP 1 Score: 70.5 bits (171), Expect = 1.6e-09
Identity = 34/65 (52.31%), Postives = 47/65 (72.31%), Query Frame = 1


Query: 19  TYTSSSLDDRDVVEKMQDVLHNYRVEQGIKKSLFLFLQAWLYVKEHQNVMWSFRLVDSFI 78
           +Y   + +D D  EKM+D+ HNY  E+G+ +SLF FLQAWLYVKEH+N++  FR V +FI
Sbjct: 164 SYNGPTFEDLD--EKMRDMFHNYIEERGVNESLFPFLQAWLYVKEHRNLLRWFRSVGTFI 223

Query: 79  KEHEN 84
            E +N
Sbjct: 224 YEPKN 226

[Close]

BLAST of ClCG05G000560.1 vs. NCBI nr
Match: gi|659113531|ref|XP_008456624.1| (PREDICTED: uncharacterized protein At2g39795, mitochondrial [Cucumis melo])

HSP 1 Score: 70.1 bits (170), Expect = 2.1e-09
Identity = 34/65 (52.31%), Postives = 47/65 (72.31%), Query Frame = 1


Query: 19  TYTSSSLDDRDVVEKMQDVLHNYRVEQGIKKSLFLFLQAWLYVKEHQNVMWSFRLVDSFI 78
           +Y   + +D D  EKM+D+ HNY  E+G+ +SLF FLQAWLYVKEH+N++  FR V +FI
Sbjct: 164 SYNGPTFEDLD--EKMRDMFHNYIDERGVNESLFPFLQAWLYVKEHRNLLRWFRSVGTFI 223

Query: 79  KEHEN 84
            E +N
Sbjct: 224 YEPKN 226

[Close]

BLAST of ClCG05G000560.1 vs. NCBI nr
Match: gi|297798700|ref|XP_002867234.1| (hypothetical protein ARALYDRAFT_328472 [Arabidopsis lyrata subsp. lyrata])

HSP 1 Score: 67.8 bits (164), Expect = 1.0e-08
Identity = 34/68 (50.00%), Postives = 48/68 (70.59%), Query Frame = 1


Query: 20  YTSSSLDDRDVVEKMQDVLHNYRVEQGIKKSLFLFLQAWLYVKEHQNVMWSFRLVDSFIK 79
           YT  S ++ D  EKM+DV H Y  E+G+ +SLF FLQAWLYVK+H+N++  F+ V +F+ 
Sbjct: 483 YTGPSFEELD--EKMRDVFHGYLEERGVNESLFPFLQAWLYVKDHRNLLRWFKSVGTFVH 542

Query: 80  EH---ENT 85
           E+   ENT
Sbjct: 543 ENPSAENT 548

[Close]

BLAST of ClCG05G000560.1 vs. NCBI nr
Match: gi|802762339|ref|XP_012089956.1| (PREDICTED: uncharacterized protein At2g39795, mitochondrial-like [Jatropha curcas])

HSP 1 Score: 67.0 bits (162), Expect = 1.8e-08
Identity = 30/53 (56.60%), Postives = 42/53 (79.25%), Query Frame = 1


Query: 32  EKMQDVLHNYRVEQGIKKSLFLFLQAWLYVKEHQNVMWSFRLVDSFIKEHENT 85
           EKM+D LH+Y  E+G+ +SLF FLQAWLYVK+H+N+M  F+ V  FI E+++T
Sbjct: 167 EKMRDALHSYIEERGVNESLFNFLQAWLYVKDHRNLMRWFKSVGMFINENKST 219

[Close]

BLAST of ClCG05G000560.1 vs. NCBI nr
Match: gi|802658407|ref|XP_012080597.1| (PREDICTED: uncharacterized protein At2g39795, mitochondrial-like [Jatropha curcas])

HSP 1 Score: 67.0 bits (162), Expect = 1.8e-08
Identity = 30/53 (56.60%), Postives = 42/53 (79.25%), Query Frame = 1


Query: 32  EKMQDVLHNYRVEQGIKKSLFLFLQAWLYVKEHQNVMWSFRLVDSFIKEHENT 85
           EKM+D LH+Y  E+G+ +SLF FLQAWLYVK+H+N+M  F+ V  FI E+++T
Sbjct: 165 EKMRDALHSYIEERGVNESLFNFLQAWLYVKDHRNLMRWFKSVGMFINENKST 217

The following BLAST results are available for this feature:

BLAST of ClCG05G000560.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KCG3_CUCSA	1.1e-09	52.31	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G046350 PE=4 SV=1	[more]
D7M9R6_ARALL	7.3e-09	50.00	Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRA...	[more]
A0A067JSX1_JATCU	1.2e-08	56.60	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02865 PE=4 SV=1	[more]
A0A067K796_JATCU	1.2e-08	56.60	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15497 PE=4 SV=1	[more]
Q8LAC7_ARATH	2.1e-08	48.53	Putative uncharacterized protein OS=Arabidopsis thaliana PE=2 SV=1	[more]

BLAST of ClCG05G000560.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G32605.1	1.1e-11	48.53	Mitochondrial glycoprotein family protein	[more]

BLAST of ClCG05G000560.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449446313\|ref\|XP_004140916.1\|	1.6e-09	52.31	PREDICTED: uncharacterized protein At2g39795, mitochondrial [Cucumis sativus]	[more]
gi\|659113531\|ref\|XP_008456624.1\|	2.1e-09	52.31	PREDICTED: uncharacterized protein At2g39795, mitochondrial [Cucumis melo]	[more]
gi\|297798700\|ref\|XP_002867234.1\|	1.0e-08	50.00	hypothetical protein ARALYDRAFT_328472 [Arabidopsis lyrata subsp. lyrata]	[more]
gi\|802762339\|ref\|XP_012089956.1\|	1.8e-08	56.60	PREDICTED: uncharacterized protein At2g39795, mitochondrial-like [Jatropha curca...	[more]
gi\|802658407\|ref\|XP_012080597.1\|	1.8e-08	56.60	PREDICTED: uncharacterized protein At2g39795, mitochondrial-like [Jatropha curca...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR003428	MAM33

Vocabulary: **Cellular Component**
Term	Definition
GO:0005759	mitochondrial matrix

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005759	mitochondrial matrix
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
ClCG05G000560	ClCG05G000560	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
ClCG05G000560.1	ClCG05G000560.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG05G000560.1.cds2	ClCG05G000560.1.cds2	CDS
ClCG05G000560.1.cds1	ClCG05G000560.1.cds1	CDS

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003428	Mitochondrial glycoprotein	GENE3D	G3DSA:3.10.280.10		coord: 13..79 score: 3.
IPR003428	Mitochondrial glycoprotein	unknown	SSF54529	Mitochondrial glycoprotein MAM33-like	coord: 29..78 score: 4.9